Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 MTCYBP18-201ENST00000501056 747 ntBASIC3.55□□□□□ -1.84
CCDC28AQ8IWP9 AC025465.4-201ENST00000513422 638 ntBASIC3.55□□□□□ -1.84
CCDC28AQ8IWP9 AC022690.1-201ENST00000526681 550 ntBASIC3.55□□□□□ -1.84
CCDC28AQ8IWP9 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC3.55□□□□□ -1.84
CCDC28AQ8IWP9 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC3.55□□□□□ -1.84
CCDC28AQ8IWP9 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC3.55□□□□□ -1.84
CCDC28AQ8IWP9 HMGN2P6-201ENST00000551091 273 ntBASIC3.55□□□□□ -1.84
CCDC28AQ8IWP9 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC3.55□□□□□ -1.84
CCDC28AQ8IWP9 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC3.55□□□□□ -1.84
CCDC28AQ8IWP9 AC055855.3-201ENST00000564269 578 ntTSL 2 BASIC3.55□□□□□ -1.84
CCDC28AQ8IWP9 AC106782.4-201ENST00000568264 210 ntBASIC3.55□□□□□ -1.84
CCDC28AQ8IWP9 AC136601.2-201ENST00000604356 474 ntBASIC3.55□□□□□ -1.84
CCDC28AQ8IWP9 BNIP3P10-201ENST00000605360 577 ntBASIC3.55□□□□□ -1.84
CCDC28AQ8IWP9 CCT7-217ENST00000626868 249 ntTSL 5 BASIC3.55□□□□□ -1.84
CCDC28AQ8IWP9 AL355480.1-201ENST00000629041 99 ntBASIC3.55□□□□□ -1.84
CCDC28AQ8IWP9 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC3.55□□□□□ -1.84
CCDC28AQ8IWP9 C4BPAP1-201ENST00000415474 1893 ntBASIC3.55□□□□□ -1.84
CCDC28AQ8IWP9 AL021368.2-201ENST00000606125 5352 ntBASIC3.55□□□□□ -1.84
CCDC28AQ8IWP9 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC3.55□□□□□ -1.84
CCDC28AQ8IWP9 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC3.55□□□□□ -1.84
CCDC28AQ8IWP9 ZNF285B-201ENST00000561698 1767 ntBASIC3.55□□□□□ -1.84
CCDC28AQ8IWP9 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.55□□□□□ -1.84
CCDC28AQ8IWP9 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC3.54□□□□□ -1.84
CCDC28AQ8IWP9 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
CCDC28AQ8IWP9 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC3.54□□□□□ -1.84
CCDC28AQ8IWP9 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
CCDC28AQ8IWP9 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
CCDC28AQ8IWP9 RNY3P14-201ENST00000384309 102 ntBASIC3.54□□□□□ -1.84
CCDC28AQ8IWP9 RNU6-171P-201ENST00000384354 107 ntBASIC3.54□□□□□ -1.84
CCDC28AQ8IWP9 RNU6-1127P-201ENST00000384580 107 ntBASIC3.54□□□□□ -1.84
CCDC28AQ8IWP9 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
CCDC28AQ8IWP9 DEFB113-201ENST00000398718 249 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
CCDC28AQ8IWP9 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
CCDC28AQ8IWP9 AL356776.1-201ENST00000406574 447 ntBASIC3.54□□□□□ -1.84
CCDC28AQ8IWP9 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC3.54□□□□□ -1.84
CCDC28AQ8IWP9 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC3.54□□□□□ -1.84
CCDC28AQ8IWP9 ZNF863P-201ENST00000426746 417 ntBASIC3.54□□□□□ -1.84
CCDC28AQ8IWP9 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC3.54□□□□□ -1.84
CCDC28AQ8IWP9 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC3.54□□□□□ -1.84
CCDC28AQ8IWP9 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC3.54□□□□□ -1.84
CCDC28AQ8IWP9 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC3.54□□□□□ -1.84
CCDC28AQ8IWP9 AL121601.2-201ENST00000438019 707 ntBASIC3.54□□□□□ -1.84
CCDC28AQ8IWP9 HMGB3P11-201ENST00000440127 604 ntBASIC3.54□□□□□ -1.84
CCDC28AQ8IWP9 ARL2BPP10-201ENST00000446487 531 ntBASIC3.54□□□□□ -1.84
CCDC28AQ8IWP9 AC084357.1-201ENST00000473404 255 ntBASIC3.54□□□□□ -1.84
CCDC28AQ8IWP9 AL135752.1-201ENST00000479477 471 ntBASIC3.54□□□□□ -1.84
CCDC28AQ8IWP9 SUMO2P6-201ENST00000505273 288 ntBASIC3.54□□□□□ -1.84
CCDC28AQ8IWP9 AC018710.1-201ENST00000506509 158 ntBASIC3.54□□□□□ -1.84
CCDC28AQ8IWP9 MTCO3P9-201ENST00000506989 781 ntBASIC3.54□□□□□ -1.84
CCDC28AQ8IWP9 MEPE-206ENST00000511670 550 ntTSL 4 BASIC3.54□□□□□ -1.84
CCDC28AQ8IWP9 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC3.54□□□□□ -1.84
CCDC28AQ8IWP9 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC3.54□□□□□ -1.84
CCDC28AQ8IWP9 AP003122.3-201ENST00000526316 255 ntBASIC3.54□□□□□ -1.84
CCDC28AQ8IWP9 AC084851.1-201ENST00000529105 249 ntBASIC3.54□□□□□ -1.84
CCDC28AQ8IWP9 ARL6IP1P1-201ENST00000545836 610 ntBASIC3.54□□□□□ -1.84
CCDC28AQ8IWP9 AC078814.3-201ENST00000553036 491 ntBASIC3.54□□□□□ -1.84
CCDC28AQ8IWP9 AL110505.1-201ENST00000557062 522 ntTSL 3 BASIC3.54□□□□□ -1.84
CCDC28AQ8IWP9 AC113418.1-201ENST00000569928 517 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
CCDC28AQ8IWP9 MIR5583-1-201ENST00000580941 59 ntBASIC3.54□□□□□ -1.84
CCDC28AQ8IWP9 AC008794.2-201ENST00000587779 293 ntTSL 2 BASIC3.54□□□□□ -1.84
CCDC28AQ8IWP9 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC3.54□□□□□ -1.84
CCDC28AQ8IWP9 Z98200.1-201ENST00000607298 470 ntBASIC3.54□□□□□ -1.84
CCDC28AQ8IWP9 AC002076.2-201ENST00000617362 122 ntBASIC3.54□□□□□ -1.84
CCDC28AQ8IWP9 SNAP23-222ENST00000626061 237 ntTSL 5 BASIC3.54□□□□□ -1.84
CCDC28AQ8IWP9 SNAP23-223ENST00000627440 210 ntTSL 5 BASIC3.54□□□□□ -1.84
CCDC28AQ8IWP9 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC3.54□□□□□ -1.84
CCDC28AQ8IWP9 Z82217.1-201ENST00000625157 8149 ntBASIC3.54□□□□□ -1.84
CCDC28AQ8IWP9 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
CCDC28AQ8IWP9 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC3.53□□□□□ -1.84
CCDC28AQ8IWP9 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
CCDC28AQ8IWP9 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC3.53□□□□□ -1.84
CCDC28AQ8IWP9 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC3.53□□□□□ -1.84
CCDC28AQ8IWP9 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
CCDC28AQ8IWP9 U8.4-201ENST00000363626 134 ntBASIC3.53□□□□□ -1.84
CCDC28AQ8IWP9 RNU6-715P-201ENST00000365204 103 ntBASIC3.53□□□□□ -1.84
CCDC28AQ8IWP9 SNORA4.3-201ENST00000365564 137 ntBASIC3.53□□□□□ -1.84
CCDC28AQ8IWP9 SNORA1.3-201ENST00000384676 136 ntBASIC3.53□□□□□ -1.84
CCDC28AQ8IWP9 RPS4XP3-201ENST00000398541 413 ntBASIC3.53□□□□□ -1.84
CCDC28AQ8IWP9 AC114755.2-201ENST00000413520 361 ntBASIC3.53□□□□□ -1.84
CCDC28AQ8IWP9 AC138393.2-201ENST00000414742 246 ntBASIC3.53□□□□□ -1.84
CCDC28AQ8IWP9 AC063979.1-201ENST00000415539 377 ntBASIC3.53□□□□□ -1.84
CCDC28AQ8IWP9 SNRPEP4-201ENST00000435815 279 ntBASIC3.53□□□□□ -1.84
CCDC28AQ8IWP9 RHOT1P3-201ENST00000436571 331 ntBASIC3.53□□□□□ -1.84
CCDC28AQ8IWP9 AC112498.1-201ENST00000444401 332 ntBASIC3.53□□□□□ -1.84
CCDC28AQ8IWP9 AL139121.1-201ENST00000445647 244 ntTSL 2 BASIC3.53□□□□□ -1.84
CCDC28AQ8IWP9 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC3.53□□□□□ -1.84
CCDC28AQ8IWP9 RPS15AP27-201ENST00000449183 343 ntBASIC3.53□□□□□ -1.84
CCDC28AQ8IWP9 CECR9-201ENST00000453421 199 ntBASIC3.53□□□□□ -1.84
CCDC28AQ8IWP9 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC3.53□□□□□ -1.84
CCDC28AQ8IWP9 RPL21P41-201ENST00000459863 264 ntBASIC3.53□□□□□ -1.84
CCDC28AQ8IWP9 HMGN2P26-201ENST00000463169 339 ntBASIC3.53□□□□□ -1.84
CCDC28AQ8IWP9 AP002884.2-201ENST00000471647 395 ntBASIC3.53□□□□□ -1.84
CCDC28AQ8IWP9 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC3.53□□□□□ -1.84
CCDC28AQ8IWP9 RPL31P61-201ENST00000496160 376 ntBASIC3.53□□□□□ -1.84
CCDC28AQ8IWP9 AC108475.1-201ENST00000507880 950 ntBASIC3.53□□□□□ -1.84
CCDC28AQ8IWP9 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC3.53□□□□□ -1.84
CCDC28AQ8IWP9 AC104136.1-201ENST00000512969 394 ntBASIC3.53□□□□□ -1.84
CCDC28AQ8IWP9 RNU1-6P-201ENST00000516290 144 ntBASIC3.53□□□□□ -1.84
CCDC28AQ8IWP9 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.53□□□□□ -1.84
CCDC28AQ8IWP9 PSMA2P1-201ENST00000526365 646 ntBASIC3.53□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 102 ms