Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
RNF4P78317 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC4.5□□□□□ -1.69
RNF4P78317 AL606534.2-204ENST00000635008 178 ntBASIC4.5□□□□□ -1.69
RNF4P78317 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC4.5□□□□□ -1.69
RNF4P78317 SCAF11-212ENST00000549162 3934 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
RNF4P78317 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC4.49□□□□□ -1.69
RNF4P78317 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC4.49□□□□□ -1.69
RNF4P78317 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC4.49□□□□□ -1.69
RNF4P78317 ZNF468-203ENST00000595646 4407 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
RNF4P78317 AC009643.2-201ENST00000603543 1448 ntBASIC4.49□□□□□ -1.69
RNF4P78317 ZNF72P-201ENST00000425869 1908 ntBASIC4.49□□□□□ -1.69
RNF4P78317 RNA5SP191-201ENST00000362585 102 ntBASIC4.49□□□□□ -1.69
RNF4P78317 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC4.49□□□□□ -1.69
RNF4P78317 RNU6-629P-201ENST00000384061 103 ntBASIC4.49□□□□□ -1.69
RNF4P78317 MT-TG-201ENST00000387429 68 ntBASIC4.49□□□□□ -1.69
RNF4P78317 RNU6-823P-201ENST00000391042 103 ntBASIC4.49□□□□□ -1.69
RNF4P78317 RNU2-3P-201ENST00000410144 191 ntBASIC4.49□□□□□ -1.69
RNF4P78317 RNU6-607P-201ENST00000411283 108 ntBASIC4.49□□□□□ -1.69
RNF4P78317 AL513331.1-201ENST00000411908 397 ntBASIC4.49□□□□□ -1.69
RNF4P78317 RPS12P23-201ENST00000419579 400 ntBASIC4.49□□□□□ -1.69
RNF4P78317 RPS15AP6-201ENST00000420703 385 ntBASIC4.49□□□□□ -1.69
RNF4P78317 AC006946.1-201ENST00000429106 328 ntBASIC4.49□□□□□ -1.69
RNF4P78317 AL049745.1-201ENST00000433953 286 ntBASIC4.49□□□□□ -1.69
RNF4P78317 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC4.49□□□□□ -1.69
RNF4P78317 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC4.49□□□□□ -1.69
RNF4P78317 RPL7P5-201ENST00000471472 736 ntBASIC4.49□□□□□ -1.69
RNF4P78317 AC108860.1-201ENST00000484521 383 ntBASIC4.49□□□□□ -1.69
RNF4P78317 DEFB109F-201ENST00000491870 277 ntBASIC4.49□□□□□ -1.69
RNF4P78317 AC083829.1-201ENST00000503756 657 ntBASIC4.49□□□□□ -1.69
RNF4P78317 SLC25A15P5-201ENST00000508033 253 ntBASIC4.49□□□□□ -1.69
RNF4P78317 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC4.49□□□□□ -1.69
RNF4P78317 RNU1-86P-201ENST00000516108 154 ntBASIC4.49□□□□□ -1.69
RNF4P78317 RNU6-927P-201ENST00000516199 100 ntBASIC4.49□□□□□ -1.69
RNF4P78317 RNU1-107P-201ENST00000516617 154 ntBASIC4.49□□□□□ -1.69
RNF4P78317 Y_RNA.721-201ENST00000517207 102 ntBASIC4.49□□□□□ -1.69
RNF4P78317 AC009812.2-201ENST00000517657 457 ntBASIC4.49□□□□□ -1.69
RNF4P78317 AC134698.5-201ENST00000519444 336 ntBASIC4.49□□□□□ -1.69
RNF4P78317 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC4.49□□□□□ -1.69
RNF4P78317 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC4.49□□□□□ -1.69
RNF4P78317 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC4.49□□□□□ -1.69
RNF4P78317 AC002545.1-201ENST00000592511 181 ntBASIC4.49□□□□□ -1.69
RNF4P78317 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC4.49□□□□□ -1.69
RNF4P78317 AC123912.5-201ENST00000605470 343 ntBASIC4.49□□□□□ -1.69
RNF4P78317 AL121932.1-201ENST00000605542 214 ntBASIC4.49□□□□□ -1.69
RNF4P78317 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC4.49□□□□□ -1.69
RNF4P78317 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC4.49□□□□□ -1.69
RNF4P78317 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC4.49□□□□□ -1.69
RNF4P78317 AC126323.6-202ENST00000568092 3511 ntBASIC4.49□□□□□ -1.69
RNF4P78317 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC4.49□□□□□ -1.69
RNF4P78317 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
RNF4P78317 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC4.49□□□□□ -1.69
RNF4P78317 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
RNF4P78317 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
RNF4P78317 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC4.48□□□□□ -1.69
RNF4P78317 AL049555.1-201ENST00000562834 1933 ntBASIC4.48□□□□□ -1.69
RNF4P78317 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC4.48□□□□□ -1.69
RNF4P78317 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC4.48□□□□□ -1.69
RNF4P78317 AC005183.1-201ENST00000603687 1979 ntBASIC4.48□□□□□ -1.69
RNF4P78317 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
RNF4P78317 Y_RNA.324-201ENST00000365165 102 ntBASIC4.48□□□□□ -1.69
RNF4P78317 RNA5SP235-201ENST00000365411 114 ntBASIC4.48□□□□□ -1.69
RNF4P78317 U3.30-201ENST00000391308 210 ntBASIC4.48□□□□□ -1.69
RNF4P78317 AC097374.1-203ENST00000400783 485 ntBASIC4.48□□□□□ -1.69
RNF4P78317 RN7SKP58-201ENST00000411010 305 ntBASIC4.48□□□□□ -1.69
RNF4P78317 AL030996.1-201ENST00000411430 235 ntBASIC4.48□□□□□ -1.69
RNF4P78317 UBE2D3P2-201ENST00000424409 445 ntBASIC4.48□□□□□ -1.69
RNF4P78317 OR2AH1P-201ENST00000425717 928 ntBASIC4.48□□□□□ -1.69
RNF4P78317 MTCO1P39-201ENST00000426148 480 ntBASIC4.48□□□□□ -1.69
RNF4P78317 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC4.48□□□□□ -1.69
RNF4P78317 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC4.48□□□□□ -1.69
RNF4P78317 AL031274.1-201ENST00000450334 232 ntBASIC4.48□□□□□ -1.69
RNF4P78317 AC112492.4-201ENST00000456549 352 ntBASIC4.48□□□□□ -1.69
RNF4P78317 RPS5P7-201ENST00000456664 608 ntBASIC4.48□□□□□ -1.69
RNF4P78317 CREM-226ENST00000469949 721 ntTSL 3 BASIC4.48□□□□□ -1.69
RNF4P78317 RN7SL558P-201ENST00000497468 299 ntBASIC4.48□□□□□ -1.69
RNF4P78317 AC114801.2-201ENST00000503825 781 ntBASIC4.48□□□□□ -1.69
RNF4P78317 AC113155.1-201ENST00000511141 769 ntBASIC4.48□□□□□ -1.69
RNF4P78317 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC4.48□□□□□ -1.69
RNF4P78317 OR7H2P-201ENST00000513483 306 ntBASIC4.48□□□□□ -1.69
RNF4P78317 RNU6-709P-201ENST00000517257 104 ntBASIC4.48□□□□□ -1.69
RNF4P78317 AP006245.2-201ENST00000522004 300 ntBASIC4.48□□□□□ -1.69
RNF4P78317 AC005868.1-201ENST00000536421 331 ntBASIC4.48□□□□□ -1.69
RNF4P78317 AP001880.2-201ENST00000538233 448 ntBASIC4.48□□□□□ -1.69
RNF4P78317 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC4.48□□□□□ -1.69
RNF4P78317 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC4.48□□□□□ -1.69
RNF4P78317 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC4.48□□□□□ -1.69
RNF4P78317 MYL12BP1-201ENST00000569826 507 ntBASIC4.48□□□□□ -1.69
RNF4P78317 FAM60BP-201ENST00000578364 658 ntBASIC4.48□□□□□ -1.69
RNF4P78317 AC022726.1-201ENST00000587475 207 ntBASIC4.48□□□□□ -1.69
RNF4P78317 AC098826.3-201ENST00000603823 466 ntBASIC4.48□□□□□ -1.69
RNF4P78317 AL391358.1-201ENST00000605342 190 ntBASIC4.48□□□□□ -1.69
RNF4P78317 AC100812.1-201ENST00000607622 580 ntBASIC4.48□□□□□ -1.69
RNF4P78317 FAM27B-201ENST00000610601 213 ntBASIC4.48□□□□□ -1.69
RNF4P78317 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC4.48□□□□□ -1.69
RNF4P78317 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC4.48□□□□□ -1.69
RNF4P78317 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
RNF4P78317 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC4.48□□□□□ -1.69
RNF4P78317 AP000542.2-201ENST00000623199 6179 ntBASIC4.48□□□□□ -1.69
RNF4P78317 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC4.48□□□□□ -1.69
RNF4P78317 SYT14-206ENST00000537238 5208 ntAPPRIS ALT2 TSL 5 BASIC4.48□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 95.3 ms