Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC3.89□□□□□ -1.79
NEK3P51956 AC018644.1-201ENST00000429934 551 ntBASIC3.89□□□□□ -1.79
NEK3P51956 AC096558.1-202ENST00000442794 561 ntTSL 4 BASIC3.89□□□□□ -1.79
NEK3P51956 NOTCH2P1-201ENST00000443481 624 ntBASIC3.89□□□□□ -1.79
NEK3P51956 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC3.89□□□□□ -1.79
NEK3P51956 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC3.89□□□□□ -1.79
NEK3P51956 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC3.89□□□□□ -1.79
NEK3P51956 AC092798.1-201ENST00000458542 409 ntBASIC3.89□□□□□ -1.79
NEK3P51956 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC3.89□□□□□ -1.79
NEK3P51956 AC079382.1-201ENST00000493346 557 ntBASIC3.89□□□□□ -1.79
NEK3P51956 AP002812.1-201ENST00000495378 474 ntBASIC3.89□□□□□ -1.79
NEK3P51956 AC107401.1-201ENST00000503426 685 ntBASIC3.89□□□□□ -1.79
NEK3P51956 AC026427.2-201ENST00000506228 536 ntBASIC3.89□□□□□ -1.79
NEK3P51956 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
NEK3P51956 SNORD27.1-201ENST00000516319 72 ntBASIC3.89□□□□□ -1.79
NEK3P51956 RNU6-143P-201ENST00000516942 93 ntBASIC3.89□□□□□ -1.79
NEK3P51956 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC3.89□□□□□ -1.79
NEK3P51956 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC3.89□□□□□ -1.79
NEK3P51956 AL121576.1-201ENST00000556055 276 ntBASIC3.89□□□□□ -1.79
NEK3P51956 AL359212.1-201ENST00000556608 614 ntBASIC3.89□□□□□ -1.79
NEK3P51956 AC006960.3-201ENST00000561845 705 ntBASIC3.89□□□□□ -1.79
NEK3P51956 MIR3158-1-201ENST00000583596 81 ntBASIC3.89□□□□□ -1.79
NEK3P51956 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC3.89□□□□□ -1.79
NEK3P51956 AP001486.3-201ENST00000615334 372 ntBASIC3.89□□□□□ -1.79
NEK3P51956 AL359547.2-201ENST00000615810 418 ntBASIC3.89□□□□□ -1.79
NEK3P51956 AC006133.1-201ENST00000617106 264 ntBASIC3.89□□□□□ -1.79
NEK3P51956 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
NEK3P51956 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
NEK3P51956 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
NEK3P51956 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC3.89□□□□□ -1.79
NEK3P51956 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC3.89□□□□□ -1.79
NEK3P51956 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
NEK3P51956 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
NEK3P51956 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC3.88□□□□□ -1.79
NEK3P51956 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC3.88□□□□□ -1.79
NEK3P51956 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC3.88□□□□□ -1.79
NEK3P51956 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC3.88□□□□□ -1.79
NEK3P51956 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
NEK3P51956 RNU6-179P-201ENST00000363350 107 ntBASIC3.88□□□□□ -1.79
NEK3P51956 RNU4-75P-201ENST00000364621 146 ntBASIC3.88□□□□□ -1.79
NEK3P51956 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC3.88□□□□□ -1.79
NEK3P51956 MIR199A2-201ENST00000385289 110 ntBASIC3.88□□□□□ -1.79
NEK3P51956 PTMAP2-201ENST00000397627 327 ntBASIC3.88□□□□□ -1.79
NEK3P51956 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC3.88□□□□□ -1.79
NEK3P51956 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC3.88□□□□□ -1.79
NEK3P51956 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC3.88□□□□□ -1.79
NEK3P51956 RPL23AP82-202ENST00000427528 469 ntBASIC3.88□□□□□ -1.79
NEK3P51956 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC3.88□□□□□ -1.79
NEK3P51956 MTND4P25-201ENST00000441039 533 ntBASIC3.88□□□□□ -1.79
NEK3P51956 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC3.88□□□□□ -1.79
NEK3P51956 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC3.88□□□□□ -1.79
NEK3P51956 AL133547.1-201ENST00000448546 220 ntBASIC3.88□□□□□ -1.79
NEK3P51956 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
NEK3P51956 FABP5P15-201ENST00000453566 214 ntBASIC3.88□□□□□ -1.79
NEK3P51956 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC3.88□□□□□ -1.79
NEK3P51956 ARL4AP2-201ENST00000507378 601 ntBASIC3.88□□□□□ -1.79
NEK3P51956 RNA5SP164-201ENST00000516533 110 ntBASIC3.88□□□□□ -1.79
NEK3P51956 SNORA67.7-201ENST00000516664 135 ntBASIC3.88□□□□□ -1.79
NEK3P51956 RNU6-711P-201ENST00000517255 106 ntBASIC3.88□□□□□ -1.79
NEK3P51956 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC3.88□□□□□ -1.79
NEK3P51956 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC3.88□□□□□ -1.79
NEK3P51956 AP001646.1-201ENST00000527936 915 ntBASIC3.88□□□□□ -1.79
NEK3P51956 OR4R1P-201ENST00000529879 463 ntBASIC3.88□□□□□ -1.79
NEK3P51956 SUB1P2-201ENST00000556401 297 ntBASIC3.88□□□□□ -1.79
NEK3P51956 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC3.88□□□□□ -1.79
NEK3P51956 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC3.88□□□□□ -1.79
NEK3P51956 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC3.88□□□□□ -1.79
NEK3P51956 BNIP3P9-201ENST00000603714 553 ntBASIC3.88□□□□□ -1.79
NEK3P51956 FTX_3.1-201ENST00000610451 147 ntBASIC3.88□□□□□ -1.79
NEK3P51956 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
NEK3P51956 uc_338.11-201ENST00000619132 160 ntBASIC3.88□□□□□ -1.79
NEK3P51956 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC3.88□□□□□ -1.79
NEK3P51956 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC3.88□□□□□ -1.79
NEK3P51956 LRRC77P-213ENST00000637727 880 ntBASIC3.88□□□□□ -1.79
NEK3P51956 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3.88□□□□□ -1.79
NEK3P51956 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC3.88□□□□□ -1.79
NEK3P51956 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC3.88□□□□□ -1.79
NEK3P51956 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.87□□□□□ -1.79
NEK3P51956 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC3.87□□□□□ -1.79
NEK3P51956 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC3.87□□□□□ -1.79
NEK3P51956 RNU6-1120P-201ENST00000362988 108 ntBASIC3.87□□□□□ -1.79
NEK3P51956 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC3.87□□□□□ -1.79
NEK3P51956 MIR23B-201ENST00000384832 97 ntBASIC3.87□□□□□ -1.79
NEK3P51956 MIR454-201ENST00000390180 115 ntBASIC3.87□□□□□ -1.79
NEK3P51956 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC3.87□□□□□ -1.79
NEK3P51956 AL591419.1-201ENST00000427423 339 ntBASIC3.87□□□□□ -1.79
NEK3P51956 CALM2P2-201ENST00000428512 440 ntBASIC3.87□□□□□ -1.79
NEK3P51956 GPM6BP2-201ENST00000432046 144 ntBASIC3.87□□□□□ -1.79
NEK3P51956 RPL23AP30-201ENST00000432419 501 ntBASIC3.87□□□□□ -1.79
NEK3P51956 MTND3P21-201ENST00000433774 331 ntBASIC3.87□□□□□ -1.79
NEK3P51956 AL591212.2-201ENST00000433923 257 ntBASIC3.87□□□□□ -1.79
NEK3P51956 RPS24P13-201ENST00000442520 397 ntBASIC3.87□□□□□ -1.79
NEK3P51956 MTND1P1-201ENST00000445453 368 ntBASIC3.87□□□□□ -1.79
NEK3P51956 DDX3P2-201ENST00000446138 111 ntBASIC3.87□□□□□ -1.79
NEK3P51956 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC3.87□□□□□ -1.79
NEK3P51956 GPM6BP1-201ENST00000446387 144 ntBASIC3.87□□□□□ -1.79
NEK3P51956 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC3.87□□□□□ -1.79
NEK3P51956 AC093899.1-201ENST00000457984 376 ntBASIC3.87□□□□□ -1.79
NEK3P51956 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC3.87□□□□□ -1.79
NEK3P51956 AC084198.1-201ENST00000477747 402 ntBASIC3.87□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 83.6 ms