Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 AC090772.4-201ENST00000623599 362 ntBASIC1.88□□□□□ -2.11
CPSF4O95639 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC1.88□□□□□ -2.11
CPSF4O95639 AL022578.1-201ENST00000439330 1433 ntBASIC1.88□□□□□ -2.11
CPSF4O95639 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
CPSF4O95639 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC1.88□□□□□ -2.11
CPSF4O95639 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC1.87□□□□□ -2.11
CPSF4O95639 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC1.87□□□□□ -2.11
CPSF4O95639 HSPE1P11-201ENST00000339579 310 ntBASIC1.87□□□□□ -2.11
CPSF4O95639 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC1.87□□□□□ -2.11
CPSF4O95639 RNU6-560P-201ENST00000364007 108 ntBASIC1.87□□□□□ -2.11
CPSF4O95639 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC1.87□□□□□ -2.11
CPSF4O95639 RNU6-413P-201ENST00000384115 107 ntBASIC1.87□□□□□ -2.11
CPSF4O95639 MIR122-201ENST00000385044 85 ntBASIC1.87□□□□□ -2.11
CPSF4O95639 UBE2V1P2-201ENST00000397758 440 ntBASIC1.87□□□□□ -2.11
CPSF4O95639 TIMM9P2-201ENST00000419324 266 ntBASIC1.87□□□□□ -2.11
CPSF4O95639 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC1.87□□□□□ -2.11
CPSF4O95639 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC1.87□□□□□ -2.11
CPSF4O95639 SRIP2-201ENST00000428470 166 ntBASIC1.87□□□□□ -2.11
CPSF4O95639 AL050303.1-201ENST00000444356 458 ntTSL 2 BASIC1.87□□□□□ -2.11
CPSF4O95639 MTCO2P25-201ENST00000447065 681 ntBASIC1.87□□□□□ -2.11
CPSF4O95639 AL163192.1-201ENST00000448858 708 ntTSL 5 BASIC1.87□□□□□ -2.11
CPSF4O95639 SNRPGP6-201ENST00000451124 220 ntBASIC1.87□□□□□ -2.11
CPSF4O95639 EEF1B2P7-201ENST00000451177 676 ntBASIC1.87□□□□□ -2.11
CPSF4O95639 BX322784.1-201ENST00000455793 1077 ntBASIC1.87□□□□□ -2.11
CPSF4O95639 AF129075.1-201ENST00000457162 794 ntTSL 3 BASIC1.87□□□□□ -2.11
CPSF4O95639 AL137847.2-201ENST00000458111 527 ntTSL 3 BASIC1.87□□□□□ -2.11
CPSF4O95639 AC097493.1-201ENST00000463958 372 ntBASIC1.87□□□□□ -2.11
CPSF4O95639 AL049714.1-201ENST00000466686 347 ntBASIC1.87□□□□□ -2.11
CPSF4O95639 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC1.87□□□□□ -2.11
CPSF4O95639 PGRMC2-204ENST00000503872 1028 ntTSL 3 BASIC1.87□□□□□ -2.11
CPSF4O95639 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC1.87□□□□□ -2.11
CPSF4O95639 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC1.87□□□□□ -2.11
CPSF4O95639 AL359273.1-201ENST00000510918 627 ntBASIC1.87□□□□□ -2.11
CPSF4O95639 AC022483.1-201ENST00000514020 567 ntBASIC1.87□□□□□ -2.11
CPSF4O95639 SNORA31.22-201ENST00000517204 135 ntBASIC1.87□□□□□ -2.11
CPSF4O95639 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC1.87□□□□□ -2.11
CPSF4O95639 OR4R1P-201ENST00000529879 463 ntBASIC1.87□□□□□ -2.11
CPSF4O95639 AC090680.2-201ENST00000550279 742 ntTSL 3 BASIC1.87□□□□□ -2.11
CPSF4O95639 LINC02410-201ENST00000553095 393 ntTSL 2 BASIC1.87□□□□□ -2.11
CPSF4O95639 AC011260.1-201ENST00000578420 472 ntBASIC1.87□□□□□ -2.11
CPSF4O95639 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC1.87□□□□□ -2.11
CPSF4O95639 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC1.87□□□□□ -2.11
CPSF4O95639 AC008739.2-201ENST00000597006 317 ntBASIC1.87□□□□□ -2.11
CPSF4O95639 AC005014.3-201ENST00000605985 190 ntBASIC1.87□□□□□ -2.11
CPSF4O95639 AL161734.1-201ENST00000609720 557 ntBASIC1.87□□□□□ -2.11
CPSF4O95639 AC006213.4-201ENST00000616184 634 ntBASIC1.87□□□□□ -2.11
CPSF4O95639 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC1.87□□□□□ -2.11
CPSF4O95639 AC009269.6-201ENST00000621778 588 ntBASIC1.87□□□□□ -2.11
CPSF4O95639 AC027309.3-201ENST00000623419 351 ntBASIC1.87□□□□□ -2.11
CPSF4O95639 FP475955.2-201ENST00000623720 458 ntTSL 2 BASIC1.87□□□□□ -2.11
CPSF4O95639 AC231657.1-201ENST00000624313 397 ntBASIC1.87□□□□□ -2.11
CPSF4O95639 AL121759.2-201ENST00000636173 570 ntTSL 4 BASIC1.87□□□□□ -2.11
CPSF4O95639 AL079343.1-201ENST00000572358 1771 ntBASIC1.87□□□□□ -2.11
CPSF4O95639 PABPC1P9-201ENST00000426076 1612 ntBASIC1.87□□□□□ -2.11
CPSF4O95639 AC005539.1-201ENST00000443768 1479 ntBASIC1.87□□□□□ -2.11
CPSF4O95639 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC1.87□□□□□ -2.11
CPSF4O95639 AC008568.2-201ENST00000623862 2313 ntBASIC1.86□□□□□ -2.11
CPSF4O95639 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC1.86□□□□□ -2.11
CPSF4O95639 AC093536.2-201ENST00000565257 1406 ntBASIC1.86□□□□□ -2.11
CPSF4O95639 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC1.86□□□□□ -2.11
CPSF4O95639 Y_RNA.234-201ENST00000364409 97 ntBASIC1.86□□□□□ -2.11
CPSF4O95639 RNU6-76P-201ENST00000384060 104 ntBASIC1.86□□□□□ -2.11
CPSF4O95639 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.86□□□□□ -2.11
CPSF4O95639 RNU6-1197P-201ENST00000391183 107 ntBASIC1.86□□□□□ -2.11
CPSF4O95639 ERHP2-201ENST00000402323 299 ntBASIC1.86□□□□□ -2.11
CPSF4O95639 RNU2-20P-201ENST00000410425 191 ntBASIC1.86□□□□□ -2.11
CPSF4O95639 CCDC58P2-201ENST00000417131 366 ntBASIC1.86□□□□□ -2.11
CPSF4O95639 AL161909.2-201ENST00000417577 409 ntTSL 5 BASIC1.86□□□□□ -2.11
CPSF4O95639 Z98742.3-201ENST00000418637 326 ntBASIC1.86□□□□□ -2.11
CPSF4O95639 EIF1AXP1-201ENST00000419267 435 ntBASIC1.86□□□□□ -2.11
CPSF4O95639 AC010967.1-201ENST00000421575 489 ntTSL 5 BASIC1.86□□□□□ -2.11
CPSF4O95639 USP9YP11-201ENST00000427537 717 ntBASIC1.86□□□□□ -2.11
CPSF4O95639 AL356320.1-201ENST00000429616 163 ntBASIC1.86□□□□□ -2.11
CPSF4O95639 AC090774.1-201ENST00000435925 246 ntBASIC1.86□□□□□ -2.11
CPSF4O95639 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC1.86□□□□□ -2.11
CPSF4O95639 AC072062.1-204ENST00000437897 1132 ntTSL 5 BASIC1.86□□□□□ -2.11
CPSF4O95639 AC009237.8-201ENST00000445492 379 ntBASIC1.86□□□□□ -2.11
CPSF4O95639 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC1.86□□□□□ -2.11
CPSF4O95639 AC007327.1-201ENST00000447461 264 ntBASIC1.86□□□□□ -2.11
CPSF4O95639 ARPC3P5-201ENST00000448802 534 ntBASIC1.86□□□□□ -2.11
CPSF4O95639 MTAPP1-201ENST00000489154 819 ntBASIC1.86□□□□□ -2.11
CPSF4O95639 LRRC70-203ENST00000491184 703 ntTSL 3 BASIC1.86□□□□□ -2.11
CPSF4O95639 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC1.86□□□□□ -2.11
CPSF4O95639 RNU6-798P-201ENST00000516912 103 ntBASIC1.86□□□□□ -2.11
CPSF4O95639 RNU6-528P-201ENST00000516926 100 ntBASIC1.86□□□□□ -2.11
CPSF4O95639 AC026241.1-201ENST00000517873 2142 ntBASIC1.86□□□□□ -2.11
CPSF4O95639 AC021451.1-201ENST00000523498 1129 ntBASIC1.86□□□□□ -2.11
CPSF4O95639 AC015771.1-201ENST00000527283 554 ntTSL 4 BASIC1.86□□□□□ -2.11
CPSF4O95639 AP003969.1-201ENST00000531846 400 ntTSL 2 BASIC1.86□□□□□ -2.11
CPSF4O95639 AP000867.2-201ENST00000532468 320 ntBASIC1.86□□□□□ -2.11
CPSF4O95639 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC1.86□□□□□ -2.11
CPSF4O95639 CCDC7-207ENST00000535327 700 ntAPPRIS ALT2 TSL 1 (best) BASIC1.86□□□□□ -2.11
CPSF4O95639 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC1.86□□□□□ -2.11
CPSF4O95639 AC121758.2-201ENST00000553271 193 ntBASIC1.86□□□□□ -2.11
CPSF4O95639 AL133370.1-201ENST00000554679 537 ntTSL 3 BASIC1.86□□□□□ -2.11
CPSF4O95639 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC1.86□□□□□ -2.11
CPSF4O95639 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC1.86□□□□□ -2.11
CPSF4O95639 AL512347.1-201ENST00000566420 503 ntBASIC1.86□□□□□ -2.11
CPSF4O95639 MIR3921-201ENST00000577308 85 ntBASIC1.86□□□□□ -2.11
CPSF4O95639 MIR4672-201ENST00000583126 81 ntBASIC1.86□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 111.8 ms