Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 AL606834.3-201ENST00000602615 496 ntBASIC2.41□□□□□ -2.02
LSM1O15116 BBIP1P1-201ENST00000602999 279 ntBASIC2.41□□□□□ -2.02
LSM1O15116 AL356280.1-201ENST00000603614 379 ntBASIC2.41□□□□□ -2.02
LSM1O15116 AC135507.1-201ENST00000607214 561 ntBASIC2.41□□□□□ -2.02
LSM1O15116 RNU6-1192P-201ENST00000612197 107 ntBASIC2.41□□□□□ -2.02
LSM1O15116 AC135507.2-201ENST00000612443 309 ntBASIC2.41□□□□□ -2.02
LSM1O15116 AC008498.1-201ENST00000613012 531 ntBASIC2.41□□□□□ -2.02
LSM1O15116 RNU6-489P-201ENST00000618289 107 ntBASIC2.41□□□□□ -2.02
LSM1O15116 AL121895.2-201ENST00000619558 447 ntBASIC2.41□□□□□ -2.02
LSM1O15116 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC2.41□□□□□ -2.02
LSM1O15116 FP475955.2-201ENST00000623720 458 ntTSL 2 BASIC2.41□□□□□ -2.02
LSM1O15116 AP001002.2-201ENST00000625137 386 ntBASIC2.41□□□□□ -2.02
LSM1O15116 AL137790.1-201ENST00000634283 177 ntBASIC2.41□□□□□ -2.02
LSM1O15116 CU459211.1-201ENST00000635667 749 ntBASIC2.41□□□□□ -2.02
LSM1O15116 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC2.41□□□□□ -2.02
LSM1O15116 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC2.41□□□□□ -2.02
LSM1O15116 AC131280.1-202ENST00000624067 4211 ntBASIC2.41□□□□□ -2.02
LSM1O15116 AL390862.1-201ENST00000635467 1469 ntBASIC2.4□□□□□ -2.02
LSM1O15116 DDX43P2-201ENST00000604753 1354 ntBASIC2.4□□□□□ -2.02
LSM1O15116 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.03
LSM1O15116 RNU6-97P-201ENST00000363387 104 ntBASIC2.4□□□□□ -2.03
LSM1O15116 SNORA38-201ENST00000363946 132 ntBASIC2.4□□□□□ -2.03
LSM1O15116 RNA5SP387-201ENST00000364226 106 ntBASIC2.4□□□□□ -2.03
LSM1O15116 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC2.4□□□□□ -2.03
LSM1O15116 SNORA9-201ENST00000384215 133 ntBASIC2.4□□□□□ -2.03
LSM1O15116 RNU6-114P-201ENST00000384704 105 ntBASIC2.4□□□□□ -2.03
LSM1O15116 RPL23AP29-201ENST00000397284 453 ntBASIC2.4□□□□□ -2.03
LSM1O15116 CCNG1P1-201ENST00000406783 885 ntBASIC2.4□□□□□ -2.03
LSM1O15116 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC2.4□□□□□ -2.03
LSM1O15116 AL391839.1-201ENST00000417447 265 ntTSL 2 BASIC2.4□□□□□ -2.03
LSM1O15116 MTCO2P17-201ENST00000424336 677 ntBASIC2.4□□□□□ -2.03
LSM1O15116 USP9YP11-201ENST00000427537 717 ntBASIC2.4□□□□□ -2.03
LSM1O15116 WARS2P1-201ENST00000429678 537 ntBASIC2.4□□□□□ -2.03
LSM1O15116 MTCO2P25-201ENST00000447065 681 ntBASIC2.4□□□□□ -2.03
LSM1O15116 AL139109.1-201ENST00000455491 297 ntBASIC2.4□□□□□ -2.03
LSM1O15116 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC2.4□□□□□ -2.03
LSM1O15116 AC016550.1-201ENST00000505348 785 ntBASIC2.4□□□□□ -2.03
LSM1O15116 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC2.4□□□□□ -2.03
LSM1O15116 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC2.4□□□□□ -2.03
LSM1O15116 IGHVII-62-1-201ENST00000519283 235 ntBASIC2.4□□□□□ -2.03
LSM1O15116 TAS2R43-201ENST00000531678 1027 ntAPPRIS P1 BASIC2.4□□□□□ -2.03
LSM1O15116 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC2.4□□□□□ -2.03
LSM1O15116 RPS3AP23-202ENST00000574601 686 ntBASIC2.4□□□□□ -2.03
LSM1O15116 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC2.4□□□□□ -2.03
LSM1O15116 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC2.4□□□□□ -2.03
LSM1O15116 ATP1B3P1-201ENST00000605365 821 ntBASIC2.4□□□□□ -2.03
LSM1O15116 AC007619.2-201ENST00000605743 379 ntBASIC2.4□□□□□ -2.03
LSM1O15116 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC2.4□□□□□ -2.03
LSM1O15116 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC2.4□□□□□ -2.03
LSM1O15116 AC231657.1-201ENST00000624313 397 ntBASIC2.4□□□□□ -2.03
LSM1O15116 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC2.4□□□□□ -2.03
LSM1O15116 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC2.4□□□□□ -2.03
LSM1O15116 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.4□□□□□ -2.03
LSM1O15116 AC092447.10-201ENST00000620607 1652 ntBASIC2.4□□□□□ -2.03
LSM1O15116 AC009902.3-201ENST00000606235 2172 ntBASIC2.4□□□□□ -2.03
LSM1O15116 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC2.4□□□□□ -2.03
LSM1O15116 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.39□□□□□ -2.03
LSM1O15116 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
LSM1O15116 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC2.39□□□□□ -2.03
LSM1O15116 TFPI-202ENST00000339091 1088 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
LSM1O15116 RNU6-7-201ENST00000364784 107 ntBASIC2.39□□□□□ -2.03
LSM1O15116 RNU6-8-201ENST00000365467 107 ntBASIC2.39□□□□□ -2.03
LSM1O15116 SNORA51.11-201ENST00000384442 131 ntBASIC2.39□□□□□ -2.03
LSM1O15116 MIR128-1-201ENST00000384921 82 ntBASIC2.39□□□□□ -2.03
LSM1O15116 SNORA11.1-201ENST00000408133 129 ntBASIC2.39□□□□□ -2.03
LSM1O15116 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.39□□□□□ -2.03
LSM1O15116 AL953862.1-201ENST00000423016 168 ntBASIC2.39□□□□□ -2.03
LSM1O15116 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC2.39□□□□□ -2.03
LSM1O15116 AP000949.1-201ENST00000438328 629 ntBASIC2.39□□□□□ -2.03
LSM1O15116 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC2.39□□□□□ -2.03
LSM1O15116 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC2.39□□□□□ -2.03
LSM1O15116 AL451164.2-201ENST00000445932 597 ntTSL 2 BASIC2.39□□□□□ -2.03
LSM1O15116 AP000936.2-201ENST00000447151 681 ntBASIC2.39□□□□□ -2.03
LSM1O15116 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
LSM1O15116 AL157400.4-201ENST00000455699 667 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
LSM1O15116 SNORD109B-201ENST00000458961 67 ntBASIC2.39□□□□□ -2.03
LSM1O15116 SNORD109A-201ENST00000459128 67 ntBASIC2.39□□□□□ -2.03
LSM1O15116 RPS3AP14-201ENST00000483907 780 ntBASIC2.39□□□□□ -2.03
LSM1O15116 HMGB1P36-201ENST00000487709 576 ntBASIC2.39□□□□□ -2.03
LSM1O15116 AC079203.1-201ENST00000487972 404 ntBASIC2.39□□□□□ -2.03
LSM1O15116 RPS29P20-201ENST00000489592 171 ntBASIC2.39□□□□□ -2.03
LSM1O15116 AC079804.2-201ENST00000490376 200 ntBASIC2.39□□□□□ -2.03
LSM1O15116 AC012625.1-201ENST00000515153 625 ntTSL 5 BASIC2.39□□□□□ -2.03
LSM1O15116 RNU5F-8P-201ENST00000515941 111 ntBASIC2.39□□□□□ -2.03
LSM1O15116 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC2.39□□□□□ -2.03
LSM1O15116 HTN3-205ENST00000530128 775 ntAPPRIS P2 TSL 2 BASIC2.39□□□□□ -2.03
LSM1O15116 AC087241.2-201ENST00000535801 324 ntBASIC2.39□□□□□ -2.03
LSM1O15116 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC2.39□□□□□ -2.03
LSM1O15116 ABBA01006766.1-201ENST00000584728 294 ntBASIC2.39□□□□□ -2.03
LSM1O15116 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC2.39□□□□□ -2.03
LSM1O15116 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC2.39□□□□□ -2.03
LSM1O15116 AL139344.1-201ENST00000605228 195 ntBASIC2.39□□□□□ -2.03
LSM1O15116 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC2.39□□□□□ -2.03
LSM1O15116 AP003476.1-201ENST00000623984 516 ntBASIC2.39□□□□□ -2.03
LSM1O15116 AC019226.1-201ENST00000625666 515 ntBASIC2.39□□□□□ -2.03
LSM1O15116 AC074099.1-201ENST00000634100 679 ntTSL 5 BASIC2.39□□□□□ -2.03
LSM1O15116 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.39□□□□□ -2.03
LSM1O15116 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
LSM1O15116 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC2.39□□□□□ -2.03
LSM1O15116 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.39□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 110.8 ms