Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC1.81□□□□□ -2.12
CCDC88BA6NC98 AC011330.2-201ENST00000621680 635 ntBASIC1.81□□□□□ -2.12
CCDC88BA6NC98 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC1.8□□□□□ -2.12
CCDC88BA6NC98 AIMP1P2-201ENST00000425294 312 ntBASIC1.8□□□□□ -2.12
CCDC88BA6NC98 AC015922.2-201ENST00000435593 184 ntBASIC1.8□□□□□ -2.12
CCDC88BA6NC98 AC015971.1-202ENST00000439077 514 ntTSL 3 BASIC1.8□□□□□ -2.12
CCDC88BA6NC98 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC1.8□□□□□ -2.12
CCDC88BA6NC98 COX6CP18-201ENST00000448769 222 ntBASIC1.8□□□□□ -2.12
CCDC88BA6NC98 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC1.8□□□□□ -2.12
CCDC88BA6NC98 AP000753.2-201ENST00000540307 423 ntTSL 3 BASIC1.8□□□□□ -2.12
CCDC88BA6NC98 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC1.8□□□□□ -2.12
CCDC88BA6NC98 AL445493.3-201ENST00000619568 477 ntBASIC1.8□□□□□ -2.12
CCDC88BA6NC98 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC1.8□□□□□ -2.12
CCDC88BA6NC98 RNA5SP465-201ENST00000391195 109 ntBASIC1.79□□□□□ -2.12
CCDC88BA6NC98 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC1.79□□□□□ -2.12
CCDC88BA6NC98 MND1-203ENST00000504860 638 ntTSL 1 (best) BASIC1.79□□□□□ -2.12
CCDC88BA6NC98 MTCYBP41-201ENST00000528913 1123 ntBASIC1.79□□□□□ -2.12
CCDC88BA6NC98 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC1.79□□□□□ -2.12
CCDC88BA6NC98 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC1.79□□□□□ -2.12
CCDC88BA6NC98 AC005730.3-201ENST00000583067 366 ntBASIC1.79□□□□□ -2.12
CCDC88BA6NC98 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC1.79□□□□□ -2.12
CCDC88BA6NC98 AC073592.7-201ENST00000623659 507 ntBASIC1.79□□□□□ -2.12
CCDC88BA6NC98 DDX10P1-201ENST00000448545 1933 ntBASIC1.79□□□□□ -2.12
CCDC88BA6NC98 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.78□□□□□ -2.12
CCDC88BA6NC98 SNORA46.1-201ENST00000391069 153 ntBASIC1.78□□□□□ -2.12
CCDC88BA6NC98 RNU1-139P-201ENST00000391307 165 ntBASIC1.78□□□□□ -2.12
CCDC88BA6NC98 AP000949.1-201ENST00000438328 629 ntBASIC1.78□□□□□ -2.12
CCDC88BA6NC98 PSPHP1-201ENST00000450062 261 ntBASIC1.78□□□□□ -2.12
CCDC88BA6NC98 CCNB1IP1P3-201ENST00000454702 829 ntBASIC1.78□□□□□ -2.12
CCDC88BA6NC98 AC010301.1-201ENST00000473936 355 ntBASIC1.78□□□□□ -2.12
CCDC88BA6NC98 RPL30P11-201ENST00000495304 339 ntBASIC1.78□□□□□ -2.12
CCDC88BA6NC98 AC022690.1-201ENST00000526681 550 ntBASIC1.78□□□□□ -2.12
CCDC88BA6NC98 AC087286.1-201ENST00000560712 568 ntTSL 3 BASIC1.78□□□□□ -2.12
CCDC88BA6NC98 AL050343.2-201ENST00000607338 280 ntBASIC1.78□□□□□ -2.12
CCDC88BA6NC98 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC1.78□□□□□ -2.12
CCDC88BA6NC98 ICE2P2-201ENST00000483823 2787 ntBASIC1.78□□□□□ -2.12
CCDC88BA6NC98 BCL2A1-202ENST00000335661 809 ntTSL 1 (best) BASIC1.77□□□□□ -2.13
CCDC88BA6NC98 MIR532-201ENST00000385025 91 ntBASIC1.77□□□□□ -2.13
CCDC88BA6NC98 HMGB1P49-201ENST00000418882 569 ntBASIC1.77□□□□□ -2.13
CCDC88BA6NC98 AC019330.1-202ENST00000440609 504 ntTSL 4 BASIC1.77□□□□□ -2.13
CCDC88BA6NC98 PABPC1P3-201ENST00000469174 459 ntBASIC1.77□□□□□ -2.13
CCDC88BA6NC98 AP004247.1-201ENST00000531556 1289 ntBASIC1.77□□□□□ -2.13
CCDC88BA6NC98 AC008739.2-201ENST00000597006 317 ntBASIC1.77□□□□□ -2.13
CCDC88BA6NC98 AC211469.2-201ENST00000605461 205 ntBASIC1.77□□□□□ -2.13
CCDC88BA6NC98 AL512504.1-201ENST00000415494 778 ntBASIC1.76□□□□□ -2.13
CCDC88BA6NC98 LINC02529-201ENST00000429657 772 ntTSL 3 BASIC1.76□□□□□ -2.13
CCDC88BA6NC98 GDI2P2-201ENST00000445131 608 ntBASIC1.76□□□□□ -2.13
CCDC88BA6NC98 RFC5P1-201ENST00000454419 874 ntBASIC1.76□□□□□ -2.13
CCDC88BA6NC98 AL031183.1-201ENST00000457667 207 ntBASIC1.76□□□□□ -2.13
CCDC88BA6NC98 AC087879.1-201ENST00000474343 374 ntBASIC1.76□□□□□ -2.13
CCDC88BA6NC98 ERHP1-201ENST00000523006 310 ntBASIC1.76□□□□□ -2.13
CCDC88BA6NC98 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC1.76□□□□□ -2.13
CCDC88BA6NC98 AC092140.2-201ENST00000618027 521 ntBASIC1.76□□□□□ -2.13
CCDC88BA6NC98 AC145207.9-201ENST00000623802 325 ntBASIC1.76□□□□□ -2.13
CCDC88BA6NC98 Y_RNA.205-201ENST00000364128 113 ntBASIC1.75□□□□□ -2.13
CCDC88BA6NC98 RNU4-41P-201ENST00000364426 143 ntBASIC1.75□□□□□ -2.13
CCDC88BA6NC98 RNU1-133P-201ENST00000364867 167 ntBASIC1.75□□□□□ -2.13
CCDC88BA6NC98 RNU6-1181P-201ENST00000384191 106 ntBASIC1.75□□□□□ -2.13
CCDC88BA6NC98 AP002784.2-201ENST00000397300 549 ntBASIC1.75□□□□□ -2.13
CCDC88BA6NC98 AL135752.1-201ENST00000479477 471 ntBASIC1.75□□□□□ -2.13
CCDC88BA6NC98 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC1.75□□□□□ -2.13
CCDC88BA6NC98 AL355432.1-201ENST00000522960 564 ntTSL 3 BASIC1.75□□□□□ -2.13
CCDC88BA6NC98 AC109635.4-202ENST00000531666 412 ntBASIC1.75□□□□□ -2.13
CCDC88BA6NC98 BLOC1S6-207ENST00000565216 573 ntTSL 3 BASIC1.75□□□□□ -2.13
CCDC88BA6NC98 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC1.75□□□□□ -2.13
CCDC88BA6NC98 DPRXP5-201ENST00000604662 539 ntBASIC1.75□□□□□ -2.13
CCDC88BA6NC98 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.75□□□□□ -2.13
CCDC88BA6NC98 OR8B3-201ENST00000354597 942 ntAPPRIS P1 BASIC1.75□□□□□ -2.13
CCDC88BA6NC98 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC1.75□□□□□ -2.13
CCDC88BA6NC98 OR8B2-201ENST00000375013 942 ntAPPRIS P1 BASIC1.75□□□□□ -2.13
CCDC88BA6NC98 AL023807.1-201ENST00000407932 359 ntBASIC1.75□□□□□ -2.13
CCDC88BA6NC98 PTGES3P2-201ENST00000407942 482 ntBASIC1.75□□□□□ -2.13
CCDC88BA6NC98 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC1.75□□□□□ -2.13
CCDC88BA6NC98 MIR1285-1-201ENST00000408593 84 ntBASIC1.75□□□□□ -2.13
CCDC88BA6NC98 AL356379.1-201ENST00000414105 126 ntBASIC1.75□□□□□ -2.13
CCDC88BA6NC98 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC1.75□□□□□ -2.13
CCDC88BA6NC98 RPS27P1-201ENST00000450552 247 ntBASIC1.75□□□□□ -2.13
CCDC88BA6NC98 RPS23P4-201ENST00000487908 423 ntBASIC1.75□□□□□ -2.13
CCDC88BA6NC98 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC1.75□□□□□ -2.13
CCDC88BA6NC98 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC1.75□□□□□ -2.13
CCDC88BA6NC98 RNA5SP384-201ENST00000516615 116 ntBASIC1.75□□□□□ -2.13
CCDC88BA6NC98 MTND2P17-201ENST00000550281 688 ntBASIC1.75□□□□□ -2.13
CCDC88BA6NC98 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC1.75□□□□□ -2.13
CCDC88BA6NC98 AC095038.3-201ENST00000634439 195 ntBASIC1.75□□□□□ -2.13
CCDC88BA6NC98 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC1.74□□□□□ -2.13
CCDC88BA6NC98 ZNF639-210ENST00000621687 1458 ntAPPRIS P1 TSL 1 (best) BASIC1.74□□□□□ -2.13
CCDC88BA6NC98 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.74□□□□□ -2.13
CCDC88BA6NC98 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC1.74□□□□□ -2.13
CCDC88BA6NC98 U8.3-201ENST00000363321 132 ntBASIC1.74□□□□□ -2.13
CCDC88BA6NC98 MIR513A1-201ENST00000385138 129 ntBASIC1.74□□□□□ -2.13
CCDC88BA6NC98 ERHP2-201ENST00000402323 299 ntBASIC1.74□□□□□ -2.13
CCDC88BA6NC98 SNORD56-201ENST00000413522 71 ntBASIC1.74□□□□□ -2.13
CCDC88BA6NC98 AF178030.1-201ENST00000415088 402 ntTSL 2 BASIC1.74□□□□□ -2.13
CCDC88BA6NC98 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC1.74□□□□□ -2.13
CCDC88BA6NC98 GPM6BP3-201ENST00000442797 145 ntBASIC1.74□□□□□ -2.13
CCDC88BA6NC98 OR6K5P-201ENST00000447050 945 ntBASIC1.74□□□□□ -2.13
CCDC88BA6NC98 RNA5SP233-201ENST00000459153 113 ntBASIC1.74□□□□□ -2.13
CCDC88BA6NC98 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC1.74□□□□□ -2.13
CCDC88BA6NC98 MIR4658-201ENST00000584344 65 ntBASIC1.74□□□□□ -2.13
CCDC88BA6NC98 AL136363.1-201ENST00000605349 337 ntBASIC1.74□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 105.5 ms