Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 HMGB3P3-201ENST00000510526 400 ntBASIC1.55□□□□□ -2.16
SCN3AQ9NY46 AC109471.1-201ENST00000511631 612 ntBASIC1.55□□□□□ -2.16
SCN3AQ9NY46 SNORA25.15-201ENST00000516487 89 ntBASIC1.55□□□□□ -2.16
SCN3AQ9NY46 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC1.55□□□□□ -2.16
SCN3AQ9NY46 AC012254.4-201ENST00000588843 273 ntBASIC1.55□□□□□ -2.16
SCN3AQ9NY46 AC005332.10-201ENST00000612725 619 ntBASIC1.55□□□□□ -2.16
SCN3AQ9NY46 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC1.55□□□□□ -2.16
SCN3AQ9NY46 ZNF876P-202ENST00000398732 1485 ntBASIC1.55□□□□□ -2.16
SCN3AQ9NY46 Z82195.2-201ENST00000612348 18351 ntBASIC1.54□□□□□ -2.16
SCN3AQ9NY46 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC1.54□□□□□ -2.16
SCN3AQ9NY46 AL021407.1-201ENST00000404531 386 ntBASIC1.54□□□□□ -2.16
SCN3AQ9NY46 BEND7P1-201ENST00000422058 457 ntBASIC1.54□□□□□ -2.16
SCN3AQ9NY46 ACTR3BP6-201ENST00000422332 1241 ntBASIC1.54□□□□□ -2.16
SCN3AQ9NY46 AL158840.1-202ENST00000425754 694 ntTSL 3 BASIC1.54□□□□□ -2.16
SCN3AQ9NY46 AC108667.1-201ENST00000428618 249 ntBASIC1.54□□□□□ -2.16
SCN3AQ9NY46 OSTCP8-201ENST00000445117 448 ntBASIC1.54□□□□□ -2.16
SCN3AQ9NY46 AC092155.2-201ENST00000454675 477 ntBASIC1.54□□□□□ -2.16
SCN3AQ9NY46 EIF4EP3-201ENST00000498782 656 ntBASIC1.54□□□□□ -2.16
SCN3AQ9NY46 MTCYBP17-201ENST00000503579 789 ntBASIC1.54□□□□□ -2.16
SCN3AQ9NY46 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC1.54□□□□□ -2.16
SCN3AQ9NY46 AL359273.1-201ENST00000510918 627 ntBASIC1.54□□□□□ -2.16
SCN3AQ9NY46 HIGD1AP6-201ENST00000521833 279 ntBASIC1.54□□□□□ -2.16
SCN3AQ9NY46 EMP1-206ENST00000537612 505 ntTSL 3 BASIC1.54□□□□□ -2.16
SCN3AQ9NY46 AC011773.3-201ENST00000546501 589 ntTSL 3 BASIC1.54□□□□□ -2.16
SCN3AQ9NY46 AC025918.2-201ENST00000558683 763 ntBASIC1.54□□□□□ -2.16
SCN3AQ9NY46 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC1.54□□□□□ -2.16
SCN3AQ9NY46 BPTFP1-201ENST00000579209 492 ntBASIC1.54□□□□□ -2.16
SCN3AQ9NY46 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC1.54□□□□□ -2.16
SCN3AQ9NY46 AC105224.1-201ENST00000587055 421 ntBASIC1.54□□□□□ -2.16
SCN3AQ9NY46 AC128687.1-201ENST00000605304 619 ntBASIC1.54□□□□□ -2.16
SCN3AQ9NY46 AL163051.2-201ENST00000618976 735 ntBASIC1.54□□□□□ -2.16
SCN3AQ9NY46 GMFB-210ENST00000628554 639 ntTSL 4 BASIC1.54□□□□□ -2.16
SCN3AQ9NY46 CCT4P2-201ENST00000233836 1548 ntBASIC1.54□□□□□ -2.16
SCN3AQ9NY46 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC1.54□□□□□ -2.16
SCN3AQ9NY46 RNU6-989P-201ENST00000362756 107 ntBASIC1.54□□□□□ -2.16
SCN3AQ9NY46 RNA5SP190-201ENST00000365222 118 ntBASIC1.54□□□□□ -2.16
SCN3AQ9NY46 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC1.54□□□□□ -2.16
SCN3AQ9NY46 FNDC1-IT1-201ENST00000419703 516 ntTSL 3 BASIC1.54□□□□□ -2.16
SCN3AQ9NY46 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC1.54□□□□□ -2.16
SCN3AQ9NY46 MTND4LP14-201ENST00000429447 288 ntBASIC1.54□□□□□ -2.16
SCN3AQ9NY46 AL451074.3-201ENST00000437709 472 ntBASIC1.54□□□□□ -2.16
SCN3AQ9NY46 AL445687.1-201ENST00000439946 251 ntBASIC1.54□□□□□ -2.16
SCN3AQ9NY46 PGBD4P3-201ENST00000440731 581 ntBASIC1.54□□□□□ -2.16
SCN3AQ9NY46 BX248409.1-201ENST00000455497 255 ntBASIC1.54□□□□□ -2.16
SCN3AQ9NY46 SNORD121B-201ENST00000458838 81 ntBASIC1.54□□□□□ -2.16
SCN3AQ9NY46 RPS27P26-201ENST00000494583 239 ntBASIC1.54□□□□□ -2.16
SCN3AQ9NY46 AC093767.1-201ENST00000504523 156 ntBASIC1.54□□□□□ -2.16
SCN3AQ9NY46 MTRNR2L5-201ENST00000512524 739 ntAPPRIS P1 BASIC1.54□□□□□ -2.16
SCN3AQ9NY46 RNU6-1095P-201ENST00000516148 108 ntBASIC1.54□□□□□ -2.16
SCN3AQ9NY46 AC084851.1-201ENST00000529105 249 ntBASIC1.54□□□□□ -2.16
SCN3AQ9NY46 AC021549.1-201ENST00000580937 433 ntTSL 3 BASIC1.54□□□□□ -2.16
SCN3AQ9NY46 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC1.54□□□□□ -2.16
SCN3AQ9NY46 VN1R88P-201ENST00000596787 292 ntBASIC1.54□□□□□ -2.16
SCN3AQ9NY46 AP000254.1-201ENST00000609934 520 ntBASIC1.54□□□□□ -2.16
SCN3AQ9NY46 uc_338.20-201ENST00000621563 178 ntBASIC1.54□□□□□ -2.16
SCN3AQ9NY46 DUXAP9-208ENST00000622815 614 ntBASIC1.54□□□□□ -2.16
SCN3AQ9NY46 AC098679.5-201ENST00000624394 571 ntBASIC1.54□□□□□ -2.16
SCN3AQ9NY46 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC1.54□□□□□ -2.16
SCN3AQ9NY46 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC1.54□□□□□ -2.16
SCN3AQ9NY46 AL022578.1-201ENST00000439330 1433 ntBASIC1.53□□□□□ -2.16
SCN3AQ9NY46 Y_RNA.4-201ENST00000362333 112 ntBASIC1.53□□□□□ -2.16
SCN3AQ9NY46 RNU6-251P-201ENST00000363235 104 ntBASIC1.53□□□□□ -2.16
SCN3AQ9NY46 Y_RNA.226-201ENST00000364337 114 ntBASIC1.53□□□□□ -2.16
SCN3AQ9NY46 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.53□□□□□ -2.16
SCN3AQ9NY46 Z98749.2-208ENST00000381646 500 ntBASIC1.53□□□□□ -2.16
SCN3AQ9NY46 MIR525-201ENST00000384978 85 ntBASIC1.53□□□□□ -2.16
SCN3AQ9NY46 SSXP10-201ENST00000402595 565 ntBASIC1.53□□□□□ -2.16
SCN3AQ9NY46 RPL23AP36-201ENST00000413895 458 ntBASIC1.53□□□□□ -2.16
SCN3AQ9NY46 RPS3AP9-201ENST00000417027 792 ntBASIC1.53□□□□□ -2.16
SCN3AQ9NY46 AL365496.1-201ENST00000426885 215 ntBASIC1.53□□□□□ -2.16
SCN3AQ9NY46 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC1.53□□□□□ -2.16
SCN3AQ9NY46 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC1.53□□□□□ -2.16
SCN3AQ9NY46 AL589880.1-201ENST00000448271 287 ntBASIC1.53□□□□□ -2.16
SCN3AQ9NY46 AL359385.1-201ENST00000456509 365 ntBASIC1.53□□□□□ -2.16
SCN3AQ9NY46 MTCO3P2-201ENST00000457365 171 ntBASIC1.53□□□□□ -2.16
SCN3AQ9NY46 AC131211.1-201ENST00000497285 483 ntTSL 5 BASIC1.53□□□□□ -2.16
SCN3AQ9NY46 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC1.53□□□□□ -2.16
SCN3AQ9NY46 AC093772.1-201ENST00000513519 506 ntTSL 2 BASIC1.53□□□□□ -2.16
SCN3AQ9NY46 RNU5A-7P-201ENST00000515979 116 ntBASIC1.53□□□□□ -2.16
SCN3AQ9NY46 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC1.53□□□□□ -2.16
SCN3AQ9NY46 SUB1P1-201ENST00000524415 382 ntBASIC1.53□□□□□ -2.16
SCN3AQ9NY46 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC1.53□□□□□ -2.16
SCN3AQ9NY46 AC012414.2-201ENST00000559474 187 ntBASIC1.53□□□□□ -2.16
SCN3AQ9NY46 AC025588.4-201ENST00000615802 908 ntBASIC1.53□□□□□ -2.16
SCN3AQ9NY46 OR1S1-201ENST00000624470 978 ntBASIC1.53□□□□□ -2.16
SCN3AQ9NY46 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC1.53□□□□□ -2.17
SCN3AQ9NY46 COMMD8-201ENST00000381571 1469 ntAPPRIS P1 TSL 1 (best) BASIC1.52□□□□□ -2.17
SCN3AQ9NY46 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC1.52□□□□□ -2.17
SCN3AQ9NY46 OFD1P2Y-201ENST00000421895 1149 ntBASIC1.52□□□□□ -2.17
SCN3AQ9NY46 MICF-203ENST00000432679 129 ntBASIC1.52□□□□□ -2.17
SCN3AQ9NY46 LINC00692-201ENST00000451284 932 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
SCN3AQ9NY46 AC104164.3-201ENST00000467363 1258 ntBASIC1.52□□□□□ -2.17
SCN3AQ9NY46 AC069528.1-202ENST00000482888 637 ntBASIC1.52□□□□□ -2.17
SCN3AQ9NY46 AC022493.1-201ENST00000492984 337 ntBASIC1.52□□□□□ -2.17
SCN3AQ9NY46 SSR3-208ENST00000496050 579 ntTSL 4 BASIC1.52□□□□□ -2.17
SCN3AQ9NY46 snoZ278.1-201ENST00000517059 112 ntBASIC1.52□□□□□ -2.17
SCN3AQ9NY46 AL442163.1-201ENST00000557251 515 ntTSL 5 BASIC1.52□□□□□ -2.17
SCN3AQ9NY46 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC1.52□□□□□ -2.17
SCN3AQ9NY46 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.52□□□□□ -2.17
SCN3AQ9NY46 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC1.52□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 102.7 ms