Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 AC006927.3-201ENST00000638789 384 ntBASIC2.87□□□□□ -1.95
DDX28Q9NUL7 OR5H6-203ENST00000642105 978 ntBASIC2.87□□□□□ -1.95
DDX28Q9NUL7 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
DDX28Q9NUL7 AC138915.1-201ENST00000565427 1685 ntBASIC2.87□□□□□ -1.95
DDX28Q9NUL7 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC2.87□□□□□ -1.95
DDX28Q9NUL7 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
DDX28Q9NUL7 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.87□□□□□ -1.95
DDX28Q9NUL7 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC2.87□□□□□ -1.95
DDX28Q9NUL7 AL049641.1-201ENST00000441055 1948 ntBASIC2.87□□□□□ -1.95
DDX28Q9NUL7 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
DDX28Q9NUL7 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
DDX28Q9NUL7 AP000568.1-201ENST00000282964 442 ntBASIC2.86□□□□□ -1.95
DDX28Q9NUL7 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC2.86□□□□□ -1.95
DDX28Q9NUL7 MIR325-201ENST00000385260 98 ntBASIC2.86□□□□□ -1.95
DDX28Q9NUL7 CCNG1P1-201ENST00000406783 885 ntBASIC2.86□□□□□ -1.95
DDX28Q9NUL7 AL513331.1-201ENST00000411908 397 ntBASIC2.86□□□□□ -1.95
DDX28Q9NUL7 LURAP1L-AS1-201ENST00000417638 799 ntTSL 3 BASIC2.86□□□□□ -1.95
DDX28Q9NUL7 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC2.86□□□□□ -1.95
DDX28Q9NUL7 RPS27AP14-201ENST00000422868 454 ntBASIC2.86□□□□□ -1.95
DDX28Q9NUL7 MTND4P20-201ENST00000424125 869 ntBASIC2.86□□□□□ -1.95
DDX28Q9NUL7 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC2.86□□□□□ -1.95
DDX28Q9NUL7 USP12PX-201ENST00000432383 1057 ntBASIC2.86□□□□□ -1.95
DDX28Q9NUL7 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC2.86□□□□□ -1.95
DDX28Q9NUL7 AL035701.1-201ENST00000444038 462 ntTSL 3 BASIC2.86□□□□□ -1.95
DDX28Q9NUL7 RPL23AP20-201ENST00000447965 421 ntBASIC2.86□□□□□ -1.95
DDX28Q9NUL7 SNRPGP6-201ENST00000451124 220 ntBASIC2.86□□□□□ -1.95
DDX28Q9NUL7 AC010099.1-201ENST00000455434 375 ntBASIC2.86□□□□□ -1.95
DDX28Q9NUL7 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC2.86□□□□□ -1.95
DDX28Q9NUL7 AL031183.1-201ENST00000457667 207 ntBASIC2.86□□□□□ -1.95
DDX28Q9NUL7 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC2.86□□□□□ -1.95
DDX28Q9NUL7 AC008481.1-201ENST00000463278 396 ntBASIC2.86□□□□□ -1.95
DDX28Q9NUL7 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC2.86□□□□□ -1.95
DDX28Q9NUL7 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
DDX28Q9NUL7 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC2.86□□□□□ -1.95
DDX28Q9NUL7 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC2.86□□□□□ -1.95
DDX28Q9NUL7 AC010261.1-201ENST00000514411 457 ntTSL 5 BASIC2.86□□□□□ -1.95
DDX28Q9NUL7 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
DDX28Q9NUL7 AC087373.1-201ENST00000524920 491 ntBASIC2.86□□□□□ -1.95
DDX28Q9NUL7 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
DDX28Q9NUL7 AC078962.4-201ENST00000546135 254 ntTSL 3 BASIC2.86□□□□□ -1.95
DDX28Q9NUL7 AC069228.1-202ENST00000550272 737 ntTSL 3 BASIC2.86□□□□□ -1.95
DDX28Q9NUL7 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC2.86□□□□□ -1.95
DDX28Q9NUL7 PCMTD1P2-201ENST00000565017 355 ntBASIC2.86□□□□□ -1.95
DDX28Q9NUL7 AMZ2P1-203ENST00000565833 850 ntBASIC2.86□□□□□ -1.95
DDX28Q9NUL7 HMGB1P6-201ENST00000569046 646 ntBASIC2.86□□□□□ -1.95
DDX28Q9NUL7 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC2.86□□□□□ -1.95
DDX28Q9NUL7 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC2.86□□□□□ -1.95
DDX28Q9NUL7 AC002064.3-201ENST00000623448 346 ntBASIC2.86□□□□□ -1.95
DDX28Q9NUL7 AP000770.2-201ENST00000623694 100 ntBASIC2.86□□□□□ -1.95
DDX28Q9NUL7 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC2.86□□□□□ -1.95
DDX28Q9NUL7 AC097655.1-201ENST00000635075 318 ntBASIC2.86□□□□□ -1.95
DDX28Q9NUL7 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
DDX28Q9NUL7 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC2.86□□□□□ -1.95
DDX28Q9NUL7 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC2.86□□□□□ -1.95
DDX28Q9NUL7 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
DDX28Q9NUL7 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC2.86□□□□□ -1.95
DDX28Q9NUL7 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
DDX28Q9NUL7 MAPK10-266ENST00000641066 6555 ntBASIC2.85□□□□□ -1.95
DDX28Q9NUL7 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.85□□□□□ -1.95
DDX28Q9NUL7 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
DDX28Q9NUL7 Y_RNA.97-201ENST00000363094 102 ntBASIC2.85□□□□□ -1.95
DDX28Q9NUL7 RNU6-741P-201ENST00000383889 107 ntBASIC2.85□□□□□ -1.95
DDX28Q9NUL7 U8.14-201ENST00000390843 143 ntBASIC2.85□□□□□ -1.95
DDX28Q9NUL7 SNORA48.2-201ENST00000390926 124 ntBASIC2.85□□□□□ -1.95
DDX28Q9NUL7 RNU6-278P-201ENST00000390945 109 ntBASIC2.85□□□□□ -1.95
DDX28Q9NUL7 AC078974.1-201ENST00000411597 223 ntBASIC2.85□□□□□ -1.95
DDX28Q9NUL7 RPL21P24-201ENST00000413752 448 ntBASIC2.85□□□□□ -1.95
DDX28Q9NUL7 Z85995.1-201ENST00000415547 335 ntBASIC2.85□□□□□ -1.95
DDX28Q9NUL7 VPS26BP1-201ENST00000417155 755 ntBASIC2.85□□□□□ -1.95
DDX28Q9NUL7 AC104653.1-201ENST00000420579 578 ntTSL 2 BASIC2.85□□□□□ -1.95
DDX28Q9NUL7 AL451054.2-201ENST00000420896 202 ntBASIC2.85□□□□□ -1.95
DDX28Q9NUL7 AL645937.1-202ENST00000421799 937 ntBASIC2.85□□□□□ -1.95
DDX28Q9NUL7 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC2.85□□□□□ -1.95
DDX28Q9NUL7 AL391336.1-201ENST00000424678 484 ntTSL 3 BASIC2.85□□□□□ -1.95
DDX28Q9NUL7 AC092047.1-201ENST00000424997 240 ntBASIC2.85□□□□□ -1.95
DDX28Q9NUL7 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC2.85□□□□□ -1.95
DDX28Q9NUL7 AC005326.1-201ENST00000429197 123 ntBASIC2.85□□□□□ -1.95
DDX28Q9NUL7 MTND5P25-201ENST00000430499 799 ntBASIC2.85□□□□□ -1.95
DDX28Q9NUL7 AL512844.2-201ENST00000433990 593 ntBASIC2.85□□□□□ -1.95
DDX28Q9NUL7 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC2.85□□□□□ -1.95
DDX28Q9NUL7 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC2.85□□□□□ -1.95
DDX28Q9NUL7 MTCO1P42-201ENST00000457379 726 ntBASIC2.85□□□□□ -1.95
DDX28Q9NUL7 SNORA59A-201ENST00000459326 152 ntBASIC2.85□□□□□ -1.95
DDX28Q9NUL7 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC2.85□□□□□ -1.95
DDX28Q9NUL7 AL135752.1-201ENST00000479477 471 ntBASIC2.85□□□□□ -1.95
DDX28Q9NUL7 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC2.85□□□□□ -1.95
DDX28Q9NUL7 SEM1P1-201ENST00000506694 209 ntBASIC2.85□□□□□ -1.95
DDX28Q9NUL7 RNU6-1003P-201ENST00000517099 105 ntBASIC2.85□□□□□ -1.95
DDX28Q9NUL7 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC2.85□□□□□ -1.95
DDX28Q9NUL7 AP000867.2-201ENST00000532468 320 ntBASIC2.85□□□□□ -1.95
DDX28Q9NUL7 MAL2-203ENST00000534619 578 ntTSL 4 BASIC2.85□□□□□ -1.95
DDX28Q9NUL7 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC2.85□□□□□ -1.95
DDX28Q9NUL7 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC2.85□□□□□ -1.95
DDX28Q9NUL7 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC2.85□□□□□ -1.95
DDX28Q9NUL7 AC090616.2-202ENST00000584248 222 ntBASIC2.85□□□□□ -1.95
DDX28Q9NUL7 MTCYBP22-201ENST00000603788 447 ntBASIC2.85□□□□□ -1.95
DDX28Q9NUL7 OR10AB1P-201ENST00000609613 938 ntBASIC2.85□□□□□ -1.95
DDX28Q9NUL7 AC103710.1-201ENST00000610003 901 ntBASIC2.85□□□□□ -1.95
DDX28Q9NUL7 AL355472.4-201ENST00000610233 626 ntBASIC2.85□□□□□ -1.95
DDX28Q9NUL7 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC2.85□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 108.6 ms