Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 AL391813.2-201ENST00000609113 322 ntBASIC2.8□□□□□ -1.96
LIME1Q9H400 AC073114.1-201ENST00000612027 490 ntBASIC2.8□□□□□ -1.96
LIME1Q9H400 TUG1_2.1-201ENST00000614234 87 ntBASIC2.8□□□□□ -1.96
LIME1Q9H400 AC112204.3-201ENST00000623822 332 ntBASIC2.8□□□□□ -1.96
LIME1Q9H400 AL603839.4-201ENST00000624658 1005 ntBASIC2.8□□□□□ -1.96
LIME1Q9H400 AC073476.4-201ENST00000628409 72 ntBASIC2.8□□□□□ -1.96
LIME1Q9H400 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC2.8□□□□□ -1.96
LIME1Q9H400 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
LIME1Q9H400 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC2.8□□□□□ -1.96
LIME1Q9H400 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC2.8□□□□□ -1.96
LIME1Q9H400 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
LIME1Q9H400 AC017071.1-201ENST00000564407 2204 ntBASIC2.8□□□□□ -1.96
LIME1Q9H400 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC2.79□□□□□ -1.96
LIME1Q9H400 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC2.79□□□□□ -1.96
LIME1Q9H400 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC2.79□□□□□ -1.96
LIME1Q9H400 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC2.79□□□□□ -1.96
LIME1Q9H400 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC2.79□□□□□ -1.96
LIME1Q9H400 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC2.79□□□□□ -1.96
LIME1Q9H400 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC2.79□□□□□ -1.96
LIME1Q9H400 AC138915.3-201ENST00000562908 1389 ntBASIC2.79□□□□□ -1.96
LIME1Q9H400 U3.4-201ENST00000363352 213 ntBASIC2.79□□□□□ -1.96
LIME1Q9H400 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC2.79□□□□□ -1.96
LIME1Q9H400 UBE2D3P2-201ENST00000424409 445 ntBASIC2.79□□□□□ -1.96
LIME1Q9H400 SETP5-201ENST00000437270 562 ntBASIC2.79□□□□□ -1.96
LIME1Q9H400 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC2.79□□□□□ -1.96
LIME1Q9H400 PGBD4P3-201ENST00000440731 581 ntBASIC2.79□□□□□ -1.96
LIME1Q9H400 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC2.79□□□□□ -1.96
LIME1Q9H400 MTCO3P45-201ENST00000443036 613 ntBASIC2.79□□□□□ -1.96
LIME1Q9H400 AC009961.3-201ENST00000449832 765 ntBASIC2.79□□□□□ -1.96
LIME1Q9H400 USP9YP12-201ENST00000450481 570 ntBASIC2.79□□□□□ -1.96
LIME1Q9H400 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC2.79□□□□□ -1.96
LIME1Q9H400 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
LIME1Q9H400 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC2.79□□□□□ -1.96
LIME1Q9H400 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
LIME1Q9H400 AC117522.2-201ENST00000510049 657 ntBASIC2.79□□□□□ -1.96
LIME1Q9H400 RNU1-61P-201ENST00000516107 151 ntBASIC2.79□□□□□ -1.96
LIME1Q9H400 AC009812.2-201ENST00000517657 457 ntBASIC2.79□□□□□ -1.96
LIME1Q9H400 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC2.79□□□□□ -1.96
LIME1Q9H400 AC100870.1-201ENST00000522035 505 ntBASIC2.79□□□□□ -1.96
LIME1Q9H400 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC2.79□□□□□ -1.96
LIME1Q9H400 FAM60DP-201ENST00000524174 632 ntBASIC2.79□□□□□ -1.96
LIME1Q9H400 OR5M10-201ENST00000526812 1052 ntAPPRIS P1 BASIC2.79□□□□□ -1.96
LIME1Q9H400 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC2.79□□□□□ -1.96
LIME1Q9H400 AC123904.2-201ENST00000548059 300 ntBASIC2.79□□□□□ -1.96
LIME1Q9H400 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC2.79□□□□□ -1.96
LIME1Q9H400 UBL5P2-201ENST00000583788 219 ntBASIC2.79□□□□□ -1.96
LIME1Q9H400 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC2.79□□□□□ -1.96
LIME1Q9H400 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC2.79□□□□□ -1.96
LIME1Q9H400 U73023.1-201ENST00000603134 700 ntBASIC2.79□□□□□ -1.96
LIME1Q9H400 AL359999.1-201ENST00000604513 294 ntBASIC2.79□□□□□ -1.96
LIME1Q9H400 AC073657.2-201ENST00000605661 303 ntBASIC2.79□□□□□ -1.96
LIME1Q9H400 AC135507.1-201ENST00000607214 561 ntBASIC2.79□□□□□ -1.96
LIME1Q9H400 AC007038.2-201ENST00000608095 740 ntBASIC2.79□□□□□ -1.96
LIME1Q9H400 AP000254.1-201ENST00000609934 520 ntBASIC2.79□□□□□ -1.96
LIME1Q9H400 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC2.79□□□□□ -1.96
LIME1Q9H400 AC004696.1-201ENST00000614345 607 ntBASIC2.79□□□□□ -1.96
LIME1Q9H400 AC009878.1-201ENST00000621819 340 ntBASIC2.79□□□□□ -1.96
LIME1Q9H400 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC2.79□□□□□ -1.96
LIME1Q9H400 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC2.79□□□□□ -1.96
LIME1Q9H400 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
LIME1Q9H400 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC2.79□□□□□ -1.96
LIME1Q9H400 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC2.79□□□□□ -1.96
LIME1Q9H400 AC011124.1-201ENST00000521221 1762 ntTSL 2 BASIC2.79□□□□□ -1.96
LIME1Q9H400 AF117829.1-206ENST00000621883 3802 ntBASIC2.79□□□□□ -1.96
LIME1Q9H400 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC2.79□□□□□ -1.96
LIME1Q9H400 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC2.79□□□□□ -1.96
LIME1Q9H400 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
LIME1Q9H400 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
LIME1Q9H400 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC2.79□□□□□ -1.96
LIME1Q9H400 AC090740.1-201ENST00000623193 2262 ntBASIC2.79□□□□□ -1.96
LIME1Q9H400 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
LIME1Q9H400 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC2.78□□□□□ -1.96
LIME1Q9H400 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC2.78□□□□□ -1.96
LIME1Q9H400 CPD-202ENST00000543464 4007 ntTSL 2 BASIC2.78□□□□□ -1.96
LIME1Q9H400 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC2.78□□□□□ -1.96
LIME1Q9H400 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC2.78□□□□□ -1.96
LIME1Q9H400 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
LIME1Q9H400 RNU1-70P-201ENST00000362618 164 ntBASIC2.78□□□□□ -1.96
LIME1Q9H400 RNA5SP383-201ENST00000362934 120 ntBASIC2.78□□□□□ -1.96
LIME1Q9H400 RNU5F-7P-201ENST00000363696 115 ntBASIC2.78□□□□□ -1.96
LIME1Q9H400 SNORA23-201ENST00000365128 182 ntBASIC2.78□□□□□ -1.96
LIME1Q9H400 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC2.78□□□□□ -1.96
LIME1Q9H400 AC110754.1-201ENST00000399740 601 ntBASIC2.78□□□□□ -1.96
LIME1Q9H400 RPA3-203ENST00000401447 414 ntTSL 3 BASIC2.78□□□□□ -1.96
LIME1Q9H400 NDUFB4P7-201ENST00000423198 363 ntBASIC2.78□□□□□ -1.96
LIME1Q9H400 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC2.78□□□□□ -1.96
LIME1Q9H400 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC2.78□□□□□ -1.96
LIME1Q9H400 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC2.78□□□□□ -1.96
LIME1Q9H400 SNRPGP9-201ENST00000456025 225 ntBASIC2.78□□□□□ -1.96
LIME1Q9H400 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC2.78□□□□□ -1.96
LIME1Q9H400 AC010486.1-201ENST00000511793 424 ntBASIC2.78□□□□□ -1.96
LIME1Q9H400 AF131216.2-201ENST00000512316 564 ntBASIC2.78□□□□□ -1.96
LIME1Q9H400 RPL12P22-201ENST00000519073 490 ntBASIC2.78□□□□□ -1.96
LIME1Q9H400 AP003467.2-201ENST00000520175 319 ntBASIC2.78□□□□□ -1.96
LIME1Q9H400 HMGN1P28-201ENST00000521340 364 ntBASIC2.78□□□□□ -1.96
LIME1Q9H400 AP002404.1-201ENST00000532005 451 ntBASIC2.78□□□□□ -1.96
LIME1Q9H400 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC2.78□□□□□ -1.96
LIME1Q9H400 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC2.78□□□□□ -1.96
LIME1Q9H400 AC106796.1-201ENST00000577173 615 ntTSL 3 BASIC2.78□□□□□ -1.96
LIME1Q9H400 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC2.78□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 119 ms