Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC5.27□□□□□ -1.57
TRAIPQ9BWF2 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC5.27□□□□□ -1.57
TRAIPQ9BWF2 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
TRAIPQ9BWF2 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC5.27□□□□□ -1.57
TRAIPQ9BWF2 RNU4-76P-201ENST00000364509 141 ntBASIC5.27□□□□□ -1.57
TRAIPQ9BWF2 RNU6-1035P-201ENST00000384477 107 ntBASIC5.27□□□□□ -1.57
TRAIPQ9BWF2 AL391417.1-201ENST00000404100 426 ntBASIC5.27□□□□□ -1.57
TRAIPQ9BWF2 AL445189.1-201ENST00000405722 338 ntBASIC5.27□□□□□ -1.57
TRAIPQ9BWF2 CYCSP33-201ENST00000414485 327 ntBASIC5.27□□□□□ -1.57
TRAIPQ9BWF2 RPL21P91-201ENST00000429231 479 ntBASIC5.27□□□□□ -1.57
TRAIPQ9BWF2 AC016831.4-201ENST00000438302 307 ntBASIC5.27□□□□□ -1.57
TRAIPQ9BWF2 AL356981.1-201ENST00000454879 684 ntBASIC5.27□□□□□ -1.57
TRAIPQ9BWF2 MTND4P17-201ENST00000470444 350 ntBASIC5.27□□□□□ -1.57
TRAIPQ9BWF2 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC5.27□□□□□ -1.57
TRAIPQ9BWF2 AC084198.1-201ENST00000477747 402 ntBASIC5.27□□□□□ -1.57
TRAIPQ9BWF2 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC5.27□□□□□ -1.57
TRAIPQ9BWF2 RNU1-54P-201ENST00000517181 120 ntBASIC5.27□□□□□ -1.57
TRAIPQ9BWF2 AP005639.2-201ENST00000527592 928 ntBASIC5.27□□□□□ -1.57
TRAIPQ9BWF2 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC5.27□□□□□ -1.57
TRAIPQ9BWF2 AC100830.2-201ENST00000581636 240 ntBASIC5.27□□□□□ -1.57
TRAIPQ9BWF2 AC209154.1-201ENST00000582156 337 ntBASIC5.27□□□□□ -1.57
TRAIPQ9BWF2 MIR3609-201ENST00000582661 80 ntBASIC5.27□□□□□ -1.57
TRAIPQ9BWF2 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC5.27□□□□□ -1.57
TRAIPQ9BWF2 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC5.27□□□□□ -1.57
TRAIPQ9BWF2 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC5.27□□□□□ -1.57
TRAIPQ9BWF2 FAM27B-201ENST00000610601 213 ntBASIC5.27□□□□□ -1.57
TRAIPQ9BWF2 FAM157A-202ENST00000615155 405 ntBASIC5.27□□□□□ -1.57
TRAIPQ9BWF2 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC5.27□□□□□ -1.57
TRAIPQ9BWF2 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC5.27□□□□□ -1.57
TRAIPQ9BWF2 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
TRAIPQ9BWF2 ZFRP1-201ENST00000457579 2970 ntBASIC5.27□□□□□ -1.57
TRAIPQ9BWF2 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
TRAIPQ9BWF2 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC5.27□□□□□ -1.57
TRAIPQ9BWF2 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
TRAIPQ9BWF2 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC5.27□□□□□ -1.57
TRAIPQ9BWF2 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
TRAIPQ9BWF2 ZNF519P1-201ENST00000449011 1626 ntBASIC5.26□□□□□ -1.57
TRAIPQ9BWF2 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC5.26□□□□□ -1.57
TRAIPQ9BWF2 AC006026.1-201ENST00000444025 1803 ntBASIC5.26□□□□□ -1.57
TRAIPQ9BWF2 AC118758.3-201ENST00000624628 24137 ntTSL 5 BASIC5.26□□□□□ -1.57
TRAIPQ9BWF2 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
TRAIPQ9BWF2 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC5.26□□□□□ -1.57
TRAIPQ9BWF2 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC5.26□□□□□ -1.57
TRAIPQ9BWF2 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
TRAIPQ9BWF2 SNORA40C-201ENST00000391285 128 ntBASIC5.26□□□□□ -1.57
TRAIPQ9BWF2 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC5.26□□□□□ -1.57
TRAIPQ9BWF2 RNU2-3P-201ENST00000410144 191 ntBASIC5.26□□□□□ -1.57
TRAIPQ9BWF2 AC016397.1-201ENST00000412463 242 ntBASIC5.26□□□□□ -1.57
TRAIPQ9BWF2 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC5.26□□□□□ -1.57
TRAIPQ9BWF2 UBE2V1P4-201ENST00000425374 344 ntBASIC5.26□□□□□ -1.57
TRAIPQ9BWF2 MTND1P14-201ENST00000427400 950 ntBASIC5.26□□□□□ -1.57
TRAIPQ9BWF2 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC5.26□□□□□ -1.57
TRAIPQ9BWF2 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC5.26□□□□□ -1.57
TRAIPQ9BWF2 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC5.26□□□□□ -1.57
TRAIPQ9BWF2 AL590664.1-201ENST00000448065 339 ntBASIC5.26□□□□□ -1.57
TRAIPQ9BWF2 CXorf51A-201ENST00000458472 431 ntAPPRIS P1 TSL 2 BASIC5.26□□□□□ -1.57
TRAIPQ9BWF2 AC092798.1-201ENST00000458542 409 ntBASIC5.26□□□□□ -1.57
TRAIPQ9BWF2 Y_RNA.632-201ENST00000459189 102 ntBASIC5.26□□□□□ -1.57
TRAIPQ9BWF2 AC130509.1-201ENST00000464158 433 ntBASIC5.26□□□□□ -1.57
TRAIPQ9BWF2 AC128713.1-201ENST00000471495 306 ntBASIC5.26□□□□□ -1.57
TRAIPQ9BWF2 RN7SL481P-201ENST00000477764 299 ntBASIC5.26□□□□□ -1.57
TRAIPQ9BWF2 PPIAP15-201ENST00000479662 484 ntBASIC5.26□□□□□ -1.57
TRAIPQ9BWF2 RN7SL459P-201ENST00000481078 302 ntBASIC5.26□□□□□ -1.57
TRAIPQ9BWF2 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC5.26□□□□□ -1.57
TRAIPQ9BWF2 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC5.26□□□□□ -1.57
TRAIPQ9BWF2 RNU1-86P-201ENST00000516108 154 ntBASIC5.26□□□□□ -1.57
TRAIPQ9BWF2 RNU1-107P-201ENST00000516617 154 ntBASIC5.26□□□□□ -1.57
TRAIPQ9BWF2 AC090281.1-201ENST00000523019 276 ntBASIC5.26□□□□□ -1.57
TRAIPQ9BWF2 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC5.26□□□□□ -1.57
TRAIPQ9BWF2 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
TRAIPQ9BWF2 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC5.26□□□□□ -1.57
TRAIPQ9BWF2 AC104002.2-201ENST00000553919 318 ntTSL 5 BASIC5.26□□□□□ -1.57
TRAIPQ9BWF2 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC5.26□□□□□ -1.57
TRAIPQ9BWF2 MIR5699-201ENST00000578903 90 ntBASIC5.26□□□□□ -1.57
TRAIPQ9BWF2 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC5.26□□□□□ -1.57
TRAIPQ9BWF2 AC016727.1-205ENST00000605437 569 ntBASIC5.26□□□□□ -1.57
TRAIPQ9BWF2 AC008962.1-201ENST00000605729 304 ntBASIC5.26□□□□□ -1.57
TRAIPQ9BWF2 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC5.26□□□□□ -1.57
TRAIPQ9BWF2 AL355365.1-201ENST00000616480 294 ntBASIC5.26□□□□□ -1.57
TRAIPQ9BWF2 RNF123-214ENST00000629802 207 ntTSL 5 BASIC5.26□□□□□ -1.57
TRAIPQ9BWF2 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC5.26□□□□□ -1.57
TRAIPQ9BWF2 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC5.26□□□□□ -1.57
TRAIPQ9BWF2 LINC01748-204ENST00000635048 5678 ntTSL 5 BASIC5.26□□□□□ -1.57
TRAIPQ9BWF2 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC5.26□□□□□ -1.57
TRAIPQ9BWF2 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC5.26□□□□□ -1.57
TRAIPQ9BWF2 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC5.26□□□□□ -1.57
TRAIPQ9BWF2 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC5.26□□□□□ -1.57
TRAIPQ9BWF2 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
TRAIPQ9BWF2 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
TRAIPQ9BWF2 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
TRAIPQ9BWF2 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
TRAIPQ9BWF2 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC5.25□□□□□ -1.57
TRAIPQ9BWF2 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
TRAIPQ9BWF2 AC138393.1-203ENST00000327086 343 ntBASIC5.25□□□□□ -1.57
TRAIPQ9BWF2 SNORD3E-201ENST00000362899 217 ntBASIC5.25□□□□□ -1.57
TRAIPQ9BWF2 Y_RNA.813-201ENST00000364639 102 ntBASIC5.25□□□□□ -1.57
TRAIPQ9BWF2 RN7SKP158-201ENST00000410453 326 ntBASIC5.25□□□□□ -1.57
TRAIPQ9BWF2 RPL26P27-201ENST00000414397 437 ntBASIC5.25□□□□□ -1.57
TRAIPQ9BWF2 PGBD4P6-201ENST00000421501 610 ntBASIC5.25□□□□□ -1.57
TRAIPQ9BWF2 MYL8P-204ENST00000431574 518 ntBASIC5.25□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 85.1 ms