Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 AL445487.1-201ENST00000415694 1580 ntBASIC4.43□□□□□ -1.7
PTCHD1Q96NR3 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC4.43□□□□□ -1.7
PTCHD1Q96NR3 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC4.43□□□□□ -1.7
PTCHD1Q96NR3 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC4.43□□□□□ -1.7
PTCHD1Q96NR3 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
PTCHD1Q96NR3 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC4.43□□□□□ -1.7
PTCHD1Q96NR3 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
PTCHD1Q96NR3 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
PTCHD1Q96NR3 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
PTCHD1Q96NR3 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
PTCHD1Q96NR3 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC4.42□□□□□ -1.7
PTCHD1Q96NR3 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC4.42□□□□□ -1.7
PTCHD1Q96NR3 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
PTCHD1Q96NR3 MAPK10-320ENST00000641462 6696 ntBASIC4.42□□□□□ -1.7
PTCHD1Q96NR3 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC4.42□□□□□ -1.7
PTCHD1Q96NR3 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC4.42□□□□□ -1.7
PTCHD1Q96NR3 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
PTCHD1Q96NR3 Y_RNA.455-201ENST00000384230 98 ntBASIC4.42□□□□□ -1.7
PTCHD1Q96NR3 AL590762.2-201ENST00000395798 571 ntBASIC4.42□□□□□ -1.7
PTCHD1Q96NR3 RPS16P5-201ENST00000406501 404 ntBASIC4.42□□□□□ -1.7
PTCHD1Q96NR3 RPL21P90-201ENST00000415692 466 ntBASIC4.42□□□□□ -1.7
PTCHD1Q96NR3 AC114482.1-201ENST00000418010 247 ntBASIC4.42□□□□□ -1.7
PTCHD1Q96NR3 UBE2V1P4-201ENST00000425374 344 ntBASIC4.42□□□□□ -1.7
PTCHD1Q96NR3 AL645568.3-201ENST00000433683 316 ntBASIC4.42□□□□□ -1.7
PTCHD1Q96NR3 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC4.42□□□□□ -1.7
PTCHD1Q96NR3 NOTCH2P1-201ENST00000443481 624 ntBASIC4.42□□□□□ -1.7
PTCHD1Q96NR3 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC4.42□□□□□ -1.7
PTCHD1Q96NR3 HSFY6P-201ENST00000445573 403 ntBASIC4.42□□□□□ -1.7
PTCHD1Q96NR3 AC073264.2-201ENST00000448886 166 ntBASIC4.42□□□□□ -1.7
PTCHD1Q96NR3 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC4.42□□□□□ -1.7
PTCHD1Q96NR3 RNU7-138P-201ENST00000459479 64 ntBASIC4.42□□□□□ -1.7
PTCHD1Q96NR3 AL591473.1-201ENST00000464297 313 ntBASIC4.42□□□□□ -1.7
PTCHD1Q96NR3 RPL5P30-201ENST00000465511 891 ntBASIC4.42□□□□□ -1.7
PTCHD1Q96NR3 AC026979.1-201ENST00000492525 396 ntBASIC4.42□□□□□ -1.7
PTCHD1Q96NR3 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC4.42□□□□□ -1.7
PTCHD1Q96NR3 RNU6-120P-201ENST00000516077 103 ntBASIC4.42□□□□□ -1.7
PTCHD1Q96NR3 SNORD116.3-201ENST00000517176 78 ntBASIC4.42□□□□□ -1.7
PTCHD1Q96NR3 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC4.42□□□□□ -1.7
PTCHD1Q96NR3 AP002404.1-201ENST00000532005 451 ntBASIC4.42□□□□□ -1.7
PTCHD1Q96NR3 AP006289.1-201ENST00000538089 277 ntBASIC4.42□□□□□ -1.7
PTCHD1Q96NR3 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC4.42□□□□□ -1.7
PTCHD1Q96NR3 AL161670.1-201ENST00000554348 137 ntBASIC4.42□□□□□ -1.7
PTCHD1Q96NR3 AC005951.2-201ENST00000576282 495 ntBASIC4.42□□□□□ -1.7
PTCHD1Q96NR3 MIR4700-201ENST00000578311 74 ntBASIC4.42□□□□□ -1.7
PTCHD1Q96NR3 MIR5692A1-201ENST00000580523 69 ntBASIC4.42□□□□□ -1.7
PTCHD1Q96NR3 BDH2P1-201ENST00000602288 736 ntBASIC4.42□□□□□ -1.7
PTCHD1Q96NR3 MIR6780A-201ENST00000615089 68 ntBASIC4.42□□□□□ -1.7
PTCHD1Q96NR3 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
PTCHD1Q96NR3 ZFRP1-201ENST00000457579 2970 ntBASIC4.42□□□□□ -1.7
PTCHD1Q96NR3 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC4.42□□□□□ -1.7
PTCHD1Q96NR3 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
PTCHD1Q96NR3 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC4.42□□□□□ -1.7
PTCHD1Q96NR3 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC4.41□□□□□ -1.7
PTCHD1Q96NR3 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC4.41□□□□□ -1.7
PTCHD1Q96NR3 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC4.41□□□□□ -1.7
PTCHD1Q96NR3 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
PTCHD1Q96NR3 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
PTCHD1Q96NR3 RNVU1-6-201ENST00000364688 164 ntBASIC4.41□□□□□ -1.7
PTCHD1Q96NR3 RNU6-702P-201ENST00000364982 107 ntBASIC4.41□□□□□ -1.7
PTCHD1Q96NR3 RNU1-115P-201ENST00000365329 160 ntBASIC4.41□□□□□ -1.7
PTCHD1Q96NR3 RNU6-1318P-201ENST00000365389 103 ntBASIC4.41□□□□□ -1.7
PTCHD1Q96NR3 Y_RNA.618-201ENST00000410949 107 ntBASIC4.41□□□□□ -1.7
PTCHD1Q96NR3 AL590139.1-201ENST00000416267 400 ntBASIC4.41□□□□□ -1.7
PTCHD1Q96NR3 AC140479.3-201ENST00000418944 1126 ntBASIC4.41□□□□□ -1.7
PTCHD1Q96NR3 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC4.41□□□□□ -1.7
PTCHD1Q96NR3 AC097713.2-201ENST00000430199 356 ntBASIC4.41□□□□□ -1.7
PTCHD1Q96NR3 AC073063.1-201ENST00000434352 607 ntBASIC4.41□□□□□ -1.7
PTCHD1Q96NR3 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC4.41□□□□□ -1.7
PTCHD1Q96NR3 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC4.41□□□□□ -1.7
PTCHD1Q96NR3 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC4.41□□□□□ -1.7
PTCHD1Q96NR3 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC4.41□□□□□ -1.7
PTCHD1Q96NR3 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC4.41□□□□□ -1.7
PTCHD1Q96NR3 H2AFZP6-201ENST00000444403 394 ntBASIC4.41□□□□□ -1.7
PTCHD1Q96NR3 AC073587.1-201ENST00000447093 876 ntBASIC4.41□□□□□ -1.7
PTCHD1Q96NR3 AC009963.2-201ENST00000453431 138 ntBASIC4.41□□□□□ -1.7
PTCHD1Q96NR3 RPS29P22-201ENST00000472363 168 ntBASIC4.41□□□□□ -1.7
PTCHD1Q96NR3 RPL12P20-201ENST00000475538 479 ntBASIC4.41□□□□□ -1.7
PTCHD1Q96NR3 HMGB1P30-201ENST00000492455 606 ntBASIC4.41□□□□□ -1.7
PTCHD1Q96NR3 AC008897.1-201ENST00000494006 347 ntBASIC4.41□□□□□ -1.7
PTCHD1Q96NR3 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC4.41□□□□□ -1.7
PTCHD1Q96NR3 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC4.41□□□□□ -1.7
PTCHD1Q96NR3 RNA5SP360-201ENST00000516555 118 ntBASIC4.41□□□□□ -1.7
PTCHD1Q96NR3 RNU6-307P-201ENST00000516743 106 ntBASIC4.41□□□□□ -1.7
PTCHD1Q96NR3 AC069113.1-201ENST00000517763 267 ntBASIC4.41□□□□□ -1.7
PTCHD1Q96NR3 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC4.41□□□□□ -1.7
PTCHD1Q96NR3 OR8R1P-201ENST00000543943 764 ntBASIC4.41□□□□□ -1.7
PTCHD1Q96NR3 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC4.41□□□□□ -1.7
PTCHD1Q96NR3 RN7SL52P-201ENST00000584271 284 ntBASIC4.41□□□□□ -1.7
PTCHD1Q96NR3 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC4.41□□□□□ -1.7
PTCHD1Q96NR3 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
PTCHD1Q96NR3 HMGB2P1-201ENST00000591146 634 ntBASIC4.41□□□□□ -1.7
PTCHD1Q96NR3 RN7SL722P-201ENST00000617780 284 ntBASIC4.41□□□□□ -1.7
PTCHD1Q96NR3 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC4.41□□□□□ -1.7
PTCHD1Q96NR3 RN7SL565P-201ENST00000618246 284 ntBASIC4.41□□□□□ -1.7
PTCHD1Q96NR3 LINC00923-207ENST00000619015 505 ntTSL 5 BASIC4.41□□□□□ -1.7
PTCHD1Q96NR3 AL353748.2-201ENST00000622148 471 ntBASIC4.41□□□□□ -1.7
PTCHD1Q96NR3 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC4.41□□□□□ -1.7
PTCHD1Q96NR3 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
PTCHD1Q96NR3 AC006994.2-202ENST00000639259 3828 ntTSL 5 BASIC4.41□□□□□ -1.7
PTCHD1Q96NR3 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 117.5 ms