Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC1.97□□□□□ -2.09
CCDC42Q96M95 RNU7-193P-201ENST00000516723 65 ntBASIC1.97□□□□□ -2.09
CCDC42Q96M95 AC007375.1-201ENST00000554513 578 ntBASIC1.97□□□□□ -2.09
CCDC42Q96M95 AL450336.1-201ENST00000605180 586 ntBASIC1.97□□□□□ -2.09
CCDC42Q96M95 TUG1_1.1-201ENST00000610654 145 ntBASIC1.97□□□□□ -2.09
CCDC42Q96M95 AL136981.2-201ENST00000617319 734 ntBASIC1.97□□□□□ -2.09
CCDC42Q96M95 AL161616.2-201ENST00000622001 565 ntTSL 4 BASIC1.97□□□□□ -2.09
CCDC42Q96M95 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC1.97□□□□□ -2.09
CCDC42Q96M95 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC1.96□□□□□ -2.1
CCDC42Q96M95 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
CCDC42Q96M95 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC1.96□□□□□ -2.1
CCDC42Q96M95 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
CCDC42Q96M95 ZNF736P10Y-201ENST00000403990 1110 ntBASIC1.96□□□□□ -2.1
CCDC42Q96M95 RN7SKP223-201ENST00000410582 62 ntBASIC1.96□□□□□ -2.1
CCDC42Q96M95 AC236972.1-201ENST00000433225 199 ntBASIC1.96□□□□□ -2.1
CCDC42Q96M95 UBE2V2P3-201ENST00000433562 437 ntBASIC1.96□□□□□ -2.1
CCDC42Q96M95 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
CCDC42Q96M95 THAP5P1-201ENST00000439089 262 ntBASIC1.96□□□□□ -2.1
CCDC42Q96M95 AL049734.2-201ENST00000441066 616 ntBASIC1.96□□□□□ -2.1
CCDC42Q96M95 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC1.96□□□□□ -2.1
CCDC42Q96M95 AL450344.2-201ENST00000455229 614 ntTSL 5 BASIC1.96□□□□□ -2.1
CCDC42Q96M95 RPL32P14-201ENST00000463196 378 ntBASIC1.96□□□□□ -2.1
CCDC42Q96M95 RPL23AP41-201ENST00000484754 458 ntBASIC1.96□□□□□ -2.1
CCDC42Q96M95 LINC01995-201ENST00000489016 621 ntTSL 3 BASIC1.96□□□□□ -2.1
CCDC42Q96M95 AC007182.2-201ENST00000489251 402 ntBASIC1.96□□□□□ -2.1
CCDC42Q96M95 EPGN-204ENST00000502358 312 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
CCDC42Q96M95 EPGN-206ENST00000503098 339 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
CCDC42Q96M95 HMGB3P17-201ENST00000504195 649 ntBASIC1.96□□□□□ -2.1
CCDC42Q96M95 EPGN-207ENST00000505212 285 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
CCDC42Q96M95 AC107393.1-201ENST00000512403 346 ntBASIC1.96□□□□□ -2.1
CCDC42Q96M95 EPGN-209ENST00000514968 312 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
CCDC42Q96M95 SCARNA15.2-201ENST00000516409 127 ntBASIC1.96□□□□□ -2.1
CCDC42Q96M95 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC1.96□□□□□ -2.1
CCDC42Q96M95 AC090753.1-201ENST00000522087 331 ntTSL 3 BASIC1.96□□□□□ -2.1
CCDC42Q96M95 AP002748.2-201ENST00000528671 348 ntBASIC1.96□□□□□ -2.1
CCDC42Q96M95 MIR5571-201ENST00000577998 113 ntBASIC1.96□□□□□ -2.1
CCDC42Q96M95 OR4K8P-201ENST00000578842 1048 ntBASIC1.96□□□□□ -2.1
CCDC42Q96M95 HMGN2P15-201ENST00000585707 270 ntBASIC1.96□□□□□ -2.1
CCDC42Q96M95 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC1.96□□□□□ -2.1
CCDC42Q96M95 RPP40P2-201ENST00000603596 712 ntBASIC1.96□□□□□ -2.1
CCDC42Q96M95 AP001486.3-201ENST00000615334 372 ntBASIC1.96□□□□□ -2.1
CCDC42Q96M95 ATP8A2P3-201ENST00000426792 1536 ntBASIC1.96□□□□□ -2.1
CCDC42Q96M95 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.96□□□□□ -2.1
CCDC42Q96M95 CXorf66-201ENST00000370540 1281 ntAPPRIS P1 TSL 1 (best) BASIC1.95□□□□□ -2.1
CCDC42Q96M95 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC1.95□□□□□ -2.1
CCDC42Q96M95 FCF1P2-201ENST00000415284 583 ntBASIC1.95□□□□□ -2.1
CCDC42Q96M95 AL451127.1-201ENST00000422909 624 ntTSL 3 BASIC1.95□□□□□ -2.1
CCDC42Q96M95 AC092047.1-201ENST00000424997 240 ntBASIC1.95□□□□□ -2.1
CCDC42Q96M95 PSMA6P3-201ENST00000428242 164 ntBASIC1.95□□□□□ -2.1
CCDC42Q96M95 AL139415.2-201ENST00000431968 163 ntBASIC1.95□□□□□ -2.1
CCDC42Q96M95 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC1.95□□□□□ -2.1
CCDC42Q96M95 SDCBPP1-201ENST00000440192 890 ntBASIC1.95□□□□□ -2.1
CCDC42Q96M95 FAM103A2P-201ENST00000444122 354 ntBASIC1.95□□□□□ -2.1
CCDC42Q96M95 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC1.95□□□□□ -2.1
CCDC42Q96M95 AL357514.1-201ENST00000446322 488 ntTSL 3 BASIC1.95□□□□□ -2.1
CCDC42Q96M95 AL050341.1-201ENST00000447743 313 ntBASIC1.95□□□□□ -2.1
CCDC42Q96M95 TPT1P14-201ENST00000448018 505 ntBASIC1.95□□□□□ -2.1
CCDC42Q96M95 KLF3P2-201ENST00000465138 268 ntBASIC1.95□□□□□ -2.1
CCDC42Q96M95 OR4G11P-201ENST00000492842 939 ntBASIC1.95□□□□□ -2.1
CCDC42Q96M95 RPL38P4-201ENST00000502376 214 ntBASIC1.95□□□□□ -2.1
CCDC42Q96M95 AC138853.1-201ENST00000503549 823 ntBASIC1.95□□□□□ -2.1
CCDC42Q96M95 COX7A2P2-201ENST00000505291 250 ntBASIC1.95□□□□□ -2.1
CCDC42Q96M95 AC109471.1-201ENST00000511631 612 ntBASIC1.95□□□□□ -2.1
CCDC42Q96M95 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC1.95□□□□□ -2.1
CCDC42Q96M95 MTRNR2L5-201ENST00000512524 739 ntAPPRIS P1 BASIC1.95□□□□□ -2.1
CCDC42Q96M95 AC022447.1-201ENST00000515358 464 ntBASIC1.95□□□□□ -2.1
CCDC42Q96M95 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC1.95□□□□□ -2.1
CCDC42Q96M95 AC008127.2-201ENST00000549925 1075 ntBASIC1.95□□□□□ -2.1
CCDC42Q96M95 AC124947.2-202ENST00000552735 133 ntBASIC1.95□□□□□ -2.1
CCDC42Q96M95 AC090971.2-201ENST00000558142 510 ntTSL 3 BASIC1.95□□□□□ -2.1
CCDC42Q96M95 AC093510.2-201ENST00000562820 896 ntBASIC1.95□□□□□ -2.1
CCDC42Q96M95 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC1.95□□□□□ -2.1
CCDC42Q96M95 MIR3122-201ENST00000577243 73 ntBASIC1.95□□□□□ -2.1
CCDC42Q96M95 AC090897.2-201ENST00000581715 130 ntBASIC1.95□□□□□ -2.1
CCDC42Q96M95 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC1.95□□□□□ -2.1
CCDC42Q96M95 AC068313.1-201ENST00000604028 1008 ntBASIC1.95□□□□□ -2.1
CCDC42Q96M95 AC025588.2-201ENST00000604851 466 ntBASIC1.95□□□□□ -2.1
CCDC42Q96M95 AC080013.4-201ENST00000607624 649 ntBASIC1.95□□□□□ -2.1
CCDC42Q96M95 AC112250.2-201ENST00000609450 491 ntTSL 3 BASIC1.95□□□□□ -2.1
CCDC42Q96M95 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC1.95□□□□□ -2.1
CCDC42Q96M95 AL161423.1-201ENST00000613700 262 ntBASIC1.95□□□□□ -2.1
CCDC42Q96M95 AC068057.2-201ENST00000624047 895 ntBASIC1.95□□□□□ -2.1
CCDC42Q96M95 RBMS3-AS3-202ENST00000635847 738 ntTSL 5 BASIC1.95□□□□□ -2.1
CCDC42Q96M95 ZNF355P-201ENST00000427301 3216 ntBASIC1.95□□□□□ -2.1
CCDC42Q96M95 AK9-203ENST00000368948 2478 ntTSL 5 BASIC1.94□□□□□ -2.1
CCDC42Q96M95 SNORD116-23-201ENST00000384645 92 ntBASIC1.94□□□□□ -2.1
CCDC42Q96M95 CIR1P3-201ENST00000405137 479 ntBASIC1.94□□□□□ -2.1
CCDC42Q96M95 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC1.94□□□□□ -2.1
CCDC42Q96M95 HMGB1P49-201ENST00000418882 569 ntBASIC1.94□□□□□ -2.1
CCDC42Q96M95 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC1.94□□□□□ -2.1
CCDC42Q96M95 RPL35AP22-201ENST00000436855 335 ntBASIC1.94□□□□□ -2.1
CCDC42Q96M95 BNIP3P2-201ENST00000441221 577 ntBASIC1.94□□□□□ -2.1
CCDC42Q96M95 PIGFP3-201ENST00000441918 722 ntBASIC1.94□□□□□ -2.1
CCDC42Q96M95 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC1.94□□□□□ -2.1
CCDC42Q96M95 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC1.94□□□□□ -2.1
CCDC42Q96M95 DYNLL1P5-201ENST00000467158 270 ntBASIC1.94□□□□□ -2.1
CCDC42Q96M95 AC048346.1-201ENST00000510247 144 ntBASIC1.94□□□□□ -2.1
CCDC42Q96M95 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC1.94□□□□□ -2.1
CCDC42Q96M95 AC095057.2-201ENST00000515422 553 ntTSL 4 BASIC1.94□□□□□ -2.1
CCDC42Q96M95 AC004217.2-201ENST00000547401 751 ntTSL 3 BASIC1.94□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 83.7 ms