Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC3.07□□□□□ -1.92
VMP1Q96GC9 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
VMP1Q96GC9 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.06□□□□□ -1.92
VMP1Q96GC9 RNU6-461P-201ENST00000364195 107 ntBASIC3.06□□□□□ -1.92
VMP1Q96GC9 RN7SKP226-201ENST00000364912 300 ntBASIC3.06□□□□□ -1.92
VMP1Q96GC9 MIR513B-201ENST00000385136 84 ntBASIC3.06□□□□□ -1.92
VMP1Q96GC9 RNU6-750P-201ENST00000390946 107 ntBASIC3.06□□□□□ -1.92
VMP1Q96GC9 AL359634.1-202ENST00000404721 284 ntBASIC3.06□□□□□ -1.92
VMP1Q96GC9 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
VMP1Q96GC9 NDUFS5P4-201ENST00000412983 318 ntBASIC3.06□□□□□ -1.92
VMP1Q96GC9 HMGB1P11-201ENST00000413899 637 ntBASIC3.06□□□□□ -1.92
VMP1Q96GC9 RPL32P35-201ENST00000415214 394 ntBASIC3.06□□□□□ -1.92
VMP1Q96GC9 BPY2DP-201ENST00000422208 265 ntBASIC3.06□□□□□ -1.92
VMP1Q96GC9 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC3.06□□□□□ -1.92
VMP1Q96GC9 NAALADL2-AS2-201ENST00000424690 1038 ntTSL 5 BASIC3.06□□□□□ -1.92
VMP1Q96GC9 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC3.06□□□□□ -1.92
VMP1Q96GC9 AC016644.1-201ENST00000438553 434 ntTSL 2 BASIC3.06□□□□□ -1.92
VMP1Q96GC9 AL356475.1-201ENST00000440321 341 ntTSL 5 BASIC3.06□□□□□ -1.92
VMP1Q96GC9 ATP5C1P1-201ENST00000441945 895 ntBASIC3.06□□□□□ -1.92
VMP1Q96GC9 ZNF736P11Y-201ENST00000442535 1213 ntBASIC3.06□□□□□ -1.92
VMP1Q96GC9 RPL7P36-201ENST00000444633 681 ntBASIC3.06□□□□□ -1.92
VMP1Q96GC9 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC3.06□□□□□ -1.92
VMP1Q96GC9 AC092958.2-201ENST00000476987 492 ntTSL 3 BASIC3.06□□□□□ -1.92
VMP1Q96GC9 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC3.06□□□□□ -1.92
VMP1Q96GC9 RPL23AP41-201ENST00000484754 458 ntBASIC3.06□□□□□ -1.92
VMP1Q96GC9 AC106821.1-201ENST00000502861 572 ntTSL 5 BASIC3.06□□□□□ -1.92
VMP1Q96GC9 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.06□□□□□ -1.92
VMP1Q96GC9 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
VMP1Q96GC9 AC008716.1-201ENST00000511084 513 ntBASIC3.06□□□□□ -1.92
VMP1Q96GC9 RNU6-64P-201ENST00000517119 105 ntBASIC3.06□□□□□ -1.92
VMP1Q96GC9 NACAP3-201ENST00000552100 481 ntBASIC3.06□□□□□ -1.92
VMP1Q96GC9 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC3.06□□□□□ -1.92
VMP1Q96GC9 MYL12B-204ENST00000584539 1064 ntAPPRIS P1 TSL 3 BASIC3.06□□□□□ -1.92
VMP1Q96GC9 DPPA3P3-201ENST00000603842 430 ntBASIC3.06□□□□□ -1.92
VMP1Q96GC9 uc_338.1-201ENST00000612113 180 ntBASIC3.06□□□□□ -1.92
VMP1Q96GC9 UBE2Q2P2-203ENST00000613592 761 ntBASIC3.06□□□□□ -1.92
VMP1Q96GC9 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC3.06□□□□□ -1.92
VMP1Q96GC9 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC3.06□□□□□ -1.92
VMP1Q96GC9 AP002782.1-201ENST00000623107 614 ntBASIC3.06□□□□□ -1.92
VMP1Q96GC9 PPP2R2A-224ENST00000640787 318 ntTSL 5 BASIC3.06□□□□□ -1.92
VMP1Q96GC9 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC3.05□□□□□ -1.92
VMP1Q96GC9 MAPK10-266ENST00000641066 6555 ntBASIC3.05□□□□□ -1.92
VMP1Q96GC9 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC3.05□□□□□ -1.92
VMP1Q96GC9 AC009487.2-201ENST00000420969 6821 ntBASIC3.05□□□□□ -1.92
VMP1Q96GC9 SNORA38.1-201ENST00000364172 131 ntBASIC3.05□□□□□ -1.92
VMP1Q96GC9 Y_RNA.333-201ENST00000365274 102 ntBASIC3.05□□□□□ -1.92
VMP1Q96GC9 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC3.05□□□□□ -1.92
VMP1Q96GC9 SNORA46-201ENST00000384762 135 ntBASIC3.05□□□□□ -1.92
VMP1Q96GC9 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC3.05□□□□□ -1.92
VMP1Q96GC9 BMS1P22-201ENST00000414726 313 ntBASIC3.05□□□□□ -1.92
VMP1Q96GC9 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC3.05□□□□□ -1.92
VMP1Q96GC9 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC3.05□□□□□ -1.92
VMP1Q96GC9 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC3.05□□□□□ -1.92
VMP1Q96GC9 VPS26BP1-201ENST00000417155 755 ntBASIC3.05□□□□□ -1.92
VMP1Q96GC9 RBM6-203ENST00000421682 684 ntTSL 2 BASIC3.05□□□□□ -1.92
VMP1Q96GC9 MED14P1-201ENST00000430517 648 ntBASIC3.05□□□□□ -1.92
VMP1Q96GC9 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC3.05□□□□□ -1.92
VMP1Q96GC9 SNRPG-206ENST00000454893 527 ntTSL 3 BASIC3.05□□□□□ -1.92
VMP1Q96GC9 ANKRD26P4-201ENST00000455755 950 ntBASIC3.05□□□□□ -1.92
VMP1Q96GC9 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC3.05□□□□□ -1.92
VMP1Q96GC9 RNU6ATAC13P-201ENST00000516152 131 ntBASIC3.05□□□□□ -1.92
VMP1Q96GC9 SNORA31.18-201ENST00000517043 134 ntBASIC3.05□□□□□ -1.92
VMP1Q96GC9 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC3.05□□□□□ -1.92
VMP1Q96GC9 AC087276.1-201ENST00000529659 480 ntBASIC3.05□□□□□ -1.92
VMP1Q96GC9 AC078962.4-201ENST00000546135 254 ntTSL 3 BASIC3.05□□□□□ -1.92
VMP1Q96GC9 MIR5680-201ENST00000577577 84 ntBASIC3.05□□□□□ -1.92
VMP1Q96GC9 MIR5195-201ENST00000583555 115 ntBASIC3.05□□□□□ -1.92
VMP1Q96GC9 MIR3117-201ENST00000584034 78 ntBASIC3.05□□□□□ -1.92
VMP1Q96GC9 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC3.05□□□□□ -1.92
VMP1Q96GC9 AC061975.8-201ENST00000587058 721 ntBASIC3.05□□□□□ -1.92
VMP1Q96GC9 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC3.05□□□□□ -1.92
VMP1Q96GC9 AL031281.1-201ENST00000604049 488 ntBASIC3.05□□□□□ -1.92
VMP1Q96GC9 AL450336.1-201ENST00000605180 586 ntBASIC3.05□□□□□ -1.92
VMP1Q96GC9 AC091965.4-201ENST00000607691 587 ntBASIC3.05□□□□□ -1.92
VMP1Q96GC9 AC068057.2-201ENST00000624047 895 ntBASIC3.05□□□□□ -1.92
VMP1Q96GC9 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC3.05□□□□□ -1.92
VMP1Q96GC9 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
VMP1Q96GC9 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC3.05□□□□□ -1.92
VMP1Q96GC9 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
VMP1Q96GC9 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
VMP1Q96GC9 AL357075.1-201ENST00000404107 726 ntBASIC3.04□□□□□ -1.92
VMP1Q96GC9 SNORA11.1-201ENST00000408133 129 ntBASIC3.04□□□□□ -1.92
VMP1Q96GC9 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC3.04□□□□□ -1.92
VMP1Q96GC9 AC093843.1-201ENST00000424395 512 ntTSL 2 BASIC3.04□□□□□ -1.92
VMP1Q96GC9 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC3.04□□□□□ -1.92
VMP1Q96GC9 HMGB1P9-201ENST00000429856 646 ntBASIC3.04□□□□□ -1.92
VMP1Q96GC9 UBE2FP3-201ENST00000436366 524 ntBASIC3.04□□□□□ -1.92
VMP1Q96GC9 AL445687.1-201ENST00000439946 251 ntBASIC3.04□□□□□ -1.92
VMP1Q96GC9 RPS3AP12-201ENST00000443616 753 ntBASIC3.04□□□□□ -1.92
VMP1Q96GC9 UQCRHP3-201ENST00000451503 251 ntBASIC3.04□□□□□ -1.92
VMP1Q96GC9 AC108059.3-201ENST00000456388 214 ntBASIC3.04□□□□□ -1.92
VMP1Q96GC9 BX510359.1-201ENST00000456973 237 ntBASIC3.04□□□□□ -1.92
VMP1Q96GC9 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC3.04□□□□□ -1.92
VMP1Q96GC9 RPS27AP10-201ENST00000496103 208 ntBASIC3.04□□□□□ -1.92
VMP1Q96GC9 AC093752.1-212ENST00000500559 453 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
VMP1Q96GC9 TPT1P8-201ENST00000510120 555 ntBASIC3.04□□□□□ -1.92
VMP1Q96GC9 RNA5SP165-201ENST00000517142 115 ntBASIC3.04□□□□□ -1.92
VMP1Q96GC9 SCARNA11.3-201ENST00000517276 130 ntBASIC3.04□□□□□ -1.92
VMP1Q96GC9 CTHRC1-204ENST00000520880 560 ntTSL 4 BASIC3.04□□□□□ -1.92
VMP1Q96GC9 DEFB108A-201ENST00000530110 222 ntBASIC3.04□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 102.8 ms