Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 OR6K5P-201ENST00000447050 945 ntBASIC1.07□□□□□ -2.24
USF3Q68DE3 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC1.07□□□□□ -2.24
USF3Q68DE3 AC092155.2-201ENST00000454675 477 ntBASIC1.07□□□□□ -2.24
USF3Q68DE3 NF1P3-201ENST00000457709 450 ntBASIC1.07□□□□□ -2.24
USF3Q68DE3 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC1.07□□□□□ -2.24
USF3Q68DE3 RPL30P14-201ENST00000482744 348 ntBASIC1.07□□□□□ -2.24
USF3Q68DE3 LNCPRESS2-201ENST00000502518 616 ntTSL 5 BASIC1.07□□□□□ -2.24
USF3Q68DE3 AC105252.1-201ENST00000503089 286 ntBASIC1.07□□□□□ -2.24
USF3Q68DE3 CDC42P4-201ENST00000510507 563 ntBASIC1.07□□□□□ -2.24
USF3Q68DE3 IGKV2D-36-201ENST00000518643 226 ntBASIC1.07□□□□□ -2.24
USF3Q68DE3 AB015752.1-201ENST00000521975 578 ntTSL 5 BASIC1.07□□□□□ -2.24
USF3Q68DE3 OR10V3P-201ENST00000525712 725 ntBASIC1.07□□□□□ -2.24
USF3Q68DE3 MIR548Y-201ENST00000582739 110 ntBASIC1.07□□□□□ -2.24
USF3Q68DE3 AC103810.9-201ENST00000606688 112 ntBASIC1.07□□□□□ -2.24
USF3Q68DE3 AC006963.1-201ENST00000624003 1052 ntBASIC1.07□□□□□ -2.24
USF3Q68DE3 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC1.06□□□□□ -2.24
USF3Q68DE3 DYNAP-201ENST00000321600 2027 ntAPPRIS P3 TSL 2 BASIC1.06□□□□□ -2.24
USF3Q68DE3 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC1.06□□□□□ -2.24
USF3Q68DE3 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC1.06□□□□□ -2.24
USF3Q68DE3 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC1.06□□□□□ -2.24
USF3Q68DE3 AL139109.1-201ENST00000455491 297 ntBASIC1.06□□□□□ -2.24
USF3Q68DE3 AC107954.1-201ENST00000565906 727 ntBASIC1.06□□□□□ -2.24
USF3Q68DE3 AC024619.4-201ENST00000580924 316 ntBASIC1.06□□□□□ -2.24
USF3Q68DE3 GLUD1P4-201ENST00000590914 418 ntBASIC1.06□□□□□ -2.24
USF3Q68DE3 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC1.06□□□□□ -2.24
USF3Q68DE3 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC1.06□□□□□ -2.24
USF3Q68DE3 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.05□□□□□ -2.24
USF3Q68DE3 RNA5SP38-201ENST00000410750 119 ntBASIC1.05□□□□□ -2.24
USF3Q68DE3 RPL21P66-201ENST00000426566 466 ntBASIC1.05□□□□□ -2.24
USF3Q68DE3 OR51AB1P-201ENST00000429046 620 ntBASIC1.05□□□□□ -2.24
USF3Q68DE3 AL512661.1-201ENST00000434586 1253 ntBASIC1.05□□□□□ -2.24
USF3Q68DE3 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC1.05□□□□□ -2.24
USF3Q68DE3 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC1.05□□□□□ -2.24
USF3Q68DE3 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC1.05□□□□□ -2.24
USF3Q68DE3 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC1.05□□□□□ -2.24
USF3Q68DE3 AC126118.1-201ENST00000607744 628 ntBASIC1.05□□□□□ -2.24
USF3Q68DE3 MTND4P27-201ENST00000450813 1354 ntBASIC1.05□□□□□ -2.24
USF3Q68DE3 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.05□□□□□ -2.24
USF3Q68DE3 AC080100.1-201ENST00000624239 5356 ntBASIC1.05□□□□□ -2.24
USF3Q68DE3 RNU6-629P-201ENST00000384061 103 ntBASIC1.05□□□□□ -2.24
USF3Q68DE3 MIR17-201ENST00000385012 84 ntBASIC1.05□□□□□ -2.24
USF3Q68DE3 MIR524-201ENST00000385242 87 ntBASIC1.05□□□□□ -2.24
USF3Q68DE3 RNA5SP498-201ENST00000411342 120 ntBASIC1.05□□□□□ -2.24
USF3Q68DE3 POLR2J4-204ENST00000418424 324 ntBASIC1.05□□□□□ -2.24
USF3Q68DE3 MTCYBP24-201ENST00000420387 1106 ntBASIC1.05□□□□□ -2.24
USF3Q68DE3 RPS3AP44-201ENST00000425466 790 ntBASIC1.05□□□□□ -2.24
USF3Q68DE3 ARL5AP3-201ENST00000439327 386 ntBASIC1.05□□□□□ -2.24
USF3Q68DE3 HRAT17-201ENST00000447785 547 ntTSL 4 BASIC1.05□□□□□ -2.24
USF3Q68DE3 FO393415.2-201ENST00000480085 343 ntBASIC1.05□□□□□ -2.24
USF3Q68DE3 AC105914.1-201ENST00000511798 226 ntBASIC1.05□□□□□ -2.24
USF3Q68DE3 AC022634.1-201ENST00000520765 532 ntBASIC1.05□□□□□ -2.24
USF3Q68DE3 AC016957.1-201ENST00000534895 309 ntBASIC1.05□□□□□ -2.24
USF3Q68DE3 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC1.05□□□□□ -2.24
USF3Q68DE3 AP003717.3-201ENST00000544832 1180 ntBASIC1.05□□□□□ -2.24
USF3Q68DE3 LINC02274-201ENST00000555539 1174 ntTSL 1 (best) BASIC1.05□□□□□ -2.24
USF3Q68DE3 MIR5000-201ENST00000577717 103 ntBASIC1.05□□□□□ -2.24
USF3Q68DE3 AC007229.1-201ENST00000590455 412 ntBASIC1.05□□□□□ -2.24
USF3Q68DE3 AC006249.1-201ENST00000621223 471 ntBASIC1.05□□□□□ -2.24
USF3Q68DE3 LINC02070-201ENST00000460586 1321 ntTSL 1 (best) BASIC1.05□□□□□ -2.24
USF3Q68DE3 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC1.05□□□□□ -2.24
USF3Q68DE3 ZNF734P-201ENST00000419494 1534 ntBASIC1.04□□□□□ -2.24
USF3Q68DE3 AP000648.3-201ENST00000623539 4507 ntBASIC1.04□□□□□ -2.24
USF3Q68DE3 STATH-201ENST00000246895 598 ntAPPRIS P1 TSL 1 (best) BASIC1.04□□□□□ -2.24
USF3Q68DE3 HMGB1P5-201ENST00000255320 642 ntBASIC1.04□□□□□ -2.24
USF3Q68DE3 MIR627-201ENST00000384979 97 ntBASIC1.04□□□□□ -2.24
USF3Q68DE3 RPS4XP3-201ENST00000398541 413 ntBASIC1.04□□□□□ -2.24
USF3Q68DE3 LINC02529-201ENST00000429657 772 ntTSL 3 BASIC1.04□□□□□ -2.24
USF3Q68DE3 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC1.04□□□□□ -2.24
USF3Q68DE3 GPM6BP3-201ENST00000442797 145 ntBASIC1.04□□□□□ -2.24
USF3Q68DE3 THAP6-205ENST00000504190 1004 ntTSL 1 (best) BASIC1.04□□□□□ -2.24
USF3Q68DE3 AC010425.1-201ENST00000511734 554 ntTSL 4 BASIC1.04□□□□□ -2.24
USF3Q68DE3 AC012613.1-201ENST00000522685 387 ntTSL 2 BASIC1.04□□□□□ -2.24
USF3Q68DE3 AP002340.1-201ENST00000529298 285 ntTSL 3 BASIC1.04□□□□□ -2.24
USF3Q68DE3 MGST1-215ENST00000540056 546 ntTSL 3 BASIC1.04□□□□□ -2.24
USF3Q68DE3 AC068338.1-201ENST00000565567 176 ntBASIC1.04□□□□□ -2.24
USF3Q68DE3 HMGB1P24-202ENST00000615653 685 ntBASIC1.04□□□□□ -2.24
USF3Q68DE3 AC025016.1-201ENST00000616746 682 ntBASIC1.04□□□□□ -2.24
USF3Q68DE3 AC007275.1-201ENST00000621243 671 ntBASIC1.04□□□□□ -2.24
USF3Q68DE3 DEFB106B-201ENST00000335479 316 ntAPPRIS P1 TSL 1 (best) BASIC1.04□□□□□ -2.24
USF3Q68DE3 MOB4-205ENST00000409916 829 ntTSL 3 BASIC1.04□□□□□ -2.24
USF3Q68DE3 LAMTOR3P1-201ENST00000428620 370 ntBASIC1.04□□□□□ -2.24
USF3Q68DE3 Z77249.1-201ENST00000444622 1175 ntBASIC1.04□□□□□ -2.24
USF3Q68DE3 HMGN2P10-201ENST00000448085 265 ntBASIC1.04□□□□□ -2.24
USF3Q68DE3 RPL31P20-201ENST00000449593 360 ntBASIC1.04□□□□□ -2.24
USF3Q68DE3 AC108156.1-201ENST00000507849 481 ntTSL 3 BASIC1.04□□□□□ -2.24
USF3Q68DE3 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC1.04□□□□□ -2.24
USF3Q68DE3 AC008837.2-201ENST00000513076 418 ntBASIC1.04□□□□□ -2.24
USF3Q68DE3 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC1.04□□□□□ -2.24
USF3Q68DE3 CYP3A137P-201ENST00000562436 69 ntBASIC1.04□□□□□ -2.24
USF3Q68DE3 ST20-203ENST00000562759 694 ntAPPRIS P1 TSL 2 BASIC1.04□□□□□ -2.24
USF3Q68DE3 AC008739.2-201ENST00000597006 317 ntBASIC1.04□□□□□ -2.24
USF3Q68DE3 LINC01930-201ENST00000602672 870 ntTSL 5 BASIC1.04□□□□□ -2.24
USF3Q68DE3 AL590426.2-201ENST00000607287 786 ntTSL 3 BASIC1.04□□□□□ -2.24
USF3Q68DE3 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC1.04□□□□□ -2.24
USF3Q68DE3 AC095038.3-201ENST00000634439 195 ntBASIC1.04□□□□□ -2.24
USF3Q68DE3 ZNF37BP-203ENST00000452306 1352 ntBASIC1.04□□□□□ -2.24
USF3Q68DE3 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC1.03□□□□□ -2.24
USF3Q68DE3 U8.3-201ENST00000363321 132 ntBASIC1.03□□□□□ -2.24
USF3Q68DE3 MIR222-201ENST00000384992 110 ntBASIC1.03□□□□□ -2.24
USF3Q68DE3 MIR767-201ENST00000390228 109 ntBASIC1.03□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 120.3 ms