Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 AC011451.2-201ENST00000604303 598 ntBASIC4.22□□□□□ -1.73
VPS53Q5VIR6 AC004853.1-201ENST00000604902 698 ntBASIC4.22□□□□□ -1.73
VPS53Q5VIR6 AL391813.2-201ENST00000609113 322 ntBASIC4.22□□□□□ -1.73
VPS53Q5VIR6 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
VPS53Q5VIR6 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC4.22□□□□□ -1.73
VPS53Q5VIR6 AL356585.4-201ENST00000623078 1229 ntBASIC4.22□□□□□ -1.73
VPS53Q5VIR6 AC139792.3-201ENST00000623525 224 ntBASIC4.22□□□□□ -1.73
VPS53Q5VIR6 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
VPS53Q5VIR6 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC4.22□□□□□ -1.73
VPS53Q5VIR6 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC4.22□□□□□ -1.73
VPS53Q5VIR6 OSBPL9P4-201ENST00000371707 1800 ntBASIC4.22□□□□□ -1.73
VPS53Q5VIR6 AC066616.2-201ENST00000559334 1481 ntBASIC4.22□□□□□ -1.73
VPS53Q5VIR6 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC4.22□□□□□ -1.73
VPS53Q5VIR6 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
VPS53Q5VIR6 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC4.21□□□□□ -1.73
VPS53Q5VIR6 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
VPS53Q5VIR6 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC4.21□□□□□ -1.74
VPS53Q5VIR6 Y_RNA.159-201ENST00000363674 87 ntBASIC4.21□□□□□ -1.74
VPS53Q5VIR6 Y_RNA.409-201ENST00000383990 98 ntBASIC4.21□□□□□ -1.74
VPS53Q5VIR6 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
VPS53Q5VIR6 AC138393.2-201ENST00000414742 246 ntBASIC4.21□□□□□ -1.74
VPS53Q5VIR6 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
VPS53Q5VIR6 AC068533.1-201ENST00000418542 415 ntBASIC4.21□□□□□ -1.74
VPS53Q5VIR6 AL137014.1-201ENST00000420490 1226 ntBASIC4.21□□□□□ -1.74
VPS53Q5VIR6 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC4.21□□□□□ -1.74
VPS53Q5VIR6 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC4.21□□□□□ -1.74
VPS53Q5VIR6 AL158071.1-201ENST00000430315 461 ntBASIC4.21□□□□□ -1.74
VPS53Q5VIR6 AC119618.1-201ENST00000434191 222 ntBASIC4.21□□□□□ -1.74
VPS53Q5VIR6 AC073063.1-201ENST00000434352 607 ntBASIC4.21□□□□□ -1.74
VPS53Q5VIR6 RPL21P23-201ENST00000446654 460 ntBASIC4.21□□□□□ -1.74
VPS53Q5VIR6 MTND5P20-201ENST00000448677 143 ntBASIC4.21□□□□□ -1.74
VPS53Q5VIR6 SNORD105B-201ENST00000458770 79 ntBASIC4.21□□□□□ -1.74
VPS53Q5VIR6 RNU7-170P-201ENST00000459303 61 ntBASIC4.21□□□□□ -1.74
VPS53Q5VIR6 AC079382.1-201ENST00000493346 557 ntBASIC4.21□□□□□ -1.74
VPS53Q5VIR6 AC069439.1-201ENST00000494739 167 ntBASIC4.21□□□□□ -1.74
VPS53Q5VIR6 RNU6-358P-201ENST00000516564 75 ntBASIC4.21□□□□□ -1.74
VPS53Q5VIR6 RNU6-1231P-201ENST00000517185 103 ntBASIC4.21□□□□□ -1.74
VPS53Q5VIR6 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC4.21□□□□□ -1.74
VPS53Q5VIR6 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC4.21□□□□□ -1.74
VPS53Q5VIR6 ARL1-211ENST00000551828 776 ntTSL 5 BASIC4.21□□□□□ -1.74
VPS53Q5VIR6 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC4.21□□□□□ -1.74
VPS53Q5VIR6 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC4.21□□□□□ -1.74
VPS53Q5VIR6 MIR4425-201ENST00000580572 84 ntBASIC4.21□□□□□ -1.74
VPS53Q5VIR6 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC4.21□□□□□ -1.74
VPS53Q5VIR6 AC068790.3-201ENST00000602988 553 ntBASIC4.21□□□□□ -1.74
VPS53Q5VIR6 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC4.21□□□□□ -1.74
VPS53Q5VIR6 AP003355.3-201ENST00000623465 114 ntBASIC4.21□□□□□ -1.74
VPS53Q5VIR6 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
VPS53Q5VIR6 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
VPS53Q5VIR6 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC4.21□□□□□ -1.74
VPS53Q5VIR6 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC4.2□□□□□ -1.74
VPS53Q5VIR6 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
VPS53Q5VIR6 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
VPS53Q5VIR6 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
VPS53Q5VIR6 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC4.2□□□□□ -1.74
VPS53Q5VIR6 SNORA72.1-201ENST00000363485 129 ntBASIC4.2□□□□□ -1.74
VPS53Q5VIR6 Y_RNA.295-201ENST00000364918 102 ntBASIC4.2□□□□□ -1.74
VPS53Q5VIR6 RNU1-39P-201ENST00000383897 165 ntBASIC4.2□□□□□ -1.74
VPS53Q5VIR6 SNORA20.2-201ENST00000383922 131 ntBASIC4.2□□□□□ -1.74
VPS53Q5VIR6 RNU6-1074P-201ENST00000383995 104 ntBASIC4.2□□□□□ -1.74
VPS53Q5VIR6 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC4.2□□□□□ -1.74
VPS53Q5VIR6 RPS29P4-201ENST00000414733 161 ntBASIC4.2□□□□□ -1.74
VPS53Q5VIR6 AC017083.1-201ENST00000428093 483 ntBASIC4.2□□□□□ -1.74
VPS53Q5VIR6 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC4.2□□□□□ -1.74
VPS53Q5VIR6 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC4.2□□□□□ -1.74
VPS53Q5VIR6 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC4.2□□□□□ -1.74
VPS53Q5VIR6 AL353691.1-201ENST00000451332 387 ntBASIC4.2□□□□□ -1.74
VPS53Q5VIR6 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC4.2□□□□□ -1.74
VPS53Q5VIR6 RBMY2UP-201ENST00000453474 324 ntBASIC4.2□□□□□ -1.74
VPS53Q5VIR6 HMGN2P7-201ENST00000456186 273 ntBASIC4.2□□□□□ -1.74
VPS53Q5VIR6 SNORD121B-201ENST00000458838 81 ntBASIC4.2□□□□□ -1.74
VPS53Q5VIR6 RPL21P129-201ENST00000491732 478 ntBASIC4.2□□□□□ -1.74
VPS53Q5VIR6 Y_RNA.702-201ENST00000516843 96 ntBASIC4.2□□□□□ -1.74
VPS53Q5VIR6 Y_RNA.704-201ENST00000516851 102 ntBASIC4.2□□□□□ -1.74
VPS53Q5VIR6 SNORA20.3-201ENST00000516880 132 ntBASIC4.2□□□□□ -1.74
VPS53Q5VIR6 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC4.2□□□□□ -1.74
VPS53Q5VIR6 AC103843.2-201ENST00000530523 682 ntBASIC4.2□□□□□ -1.74
VPS53Q5VIR6 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
VPS53Q5VIR6 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC4.2□□□□□ -1.74
VPS53Q5VIR6 SUB1P2-201ENST00000556401 297 ntBASIC4.2□□□□□ -1.74
VPS53Q5VIR6 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC4.2□□□□□ -1.74
VPS53Q5VIR6 MIR3146-201ENST00000580367 79 ntBASIC4.2□□□□□ -1.74
VPS53Q5VIR6 AC060771.1-201ENST00000582031 164 ntBASIC4.2□□□□□ -1.74
VPS53Q5VIR6 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC4.2□□□□□ -1.74
VPS53Q5VIR6 MIR92B-201ENST00000607575 96 ntBASIC4.2□□□□□ -1.74
VPS53Q5VIR6 AC243312.2-201ENST00000623340 601 ntBASIC4.2□□□□□ -1.74
VPS53Q5VIR6 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
VPS53Q5VIR6 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
VPS53Q5VIR6 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
VPS53Q5VIR6 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC4.19□□□□□ -1.74
VPS53Q5VIR6 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC4.19□□□□□ -1.74
VPS53Q5VIR6 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC4.19□□□□□ -1.74
VPS53Q5VIR6 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC4.19□□□□□ -1.74
VPS53Q5VIR6 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
VPS53Q5VIR6 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
VPS53Q5VIR6 RNU6-50P-201ENST00000362356 103 ntBASIC4.19□□□□□ -1.74
VPS53Q5VIR6 RNU6-483P-201ENST00000384088 108 ntBASIC4.19□□□□□ -1.74
VPS53Q5VIR6 SNORD17-201ENST00000390930 237 ntBASIC4.19□□□□□ -1.74
VPS53Q5VIR6 RNA5SP171-201ENST00000391071 115 ntBASIC4.19□□□□□ -1.74
VPS53Q5VIR6 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 101.6 ms