Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AL670379.9-201ENST00000605428 253 ntBASIC4.28□□□□□ -1.72
USP39Q53GS9 AL445363.3-201ENST00000623080 671 ntBASIC4.28□□□□□ -1.72
USP39Q53GS9 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
USP39Q53GS9 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
USP39Q53GS9 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC4.28□□□□□ -1.72
USP39Q53GS9 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC4.28□□□□□ -1.72
USP39Q53GS9 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC4.28□□□□□ -1.72
USP39Q53GS9 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
USP39Q53GS9 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC4.28□□□□□ -1.72
USP39Q53GS9 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
USP39Q53GS9 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.28□□□□□ -1.72
USP39Q53GS9 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
USP39Q53GS9 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
USP39Q53GS9 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC4.27□□□□□ -1.73
USP39Q53GS9 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC4.27□□□□□ -1.73
USP39Q53GS9 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC4.27□□□□□ -1.73
USP39Q53GS9 RNU6-28P-201ENST00000362378 107 ntBASIC4.27□□□□□ -1.73
USP39Q53GS9 AC097374.1-203ENST00000400783 485 ntBASIC4.27□□□□□ -1.73
USP39Q53GS9 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC4.27□□□□□ -1.73
USP39Q53GS9 AL023807.1-201ENST00000407932 359 ntBASIC4.27□□□□□ -1.73
USP39Q53GS9 RNA5SP44-201ENST00000410446 133 ntBASIC4.27□□□□□ -1.73
USP39Q53GS9 RPS12P24-201ENST00000412619 387 ntBASIC4.27□□□□□ -1.73
USP39Q53GS9 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC4.27□□□□□ -1.73
USP39Q53GS9 RPL31P12-201ENST00000422587 358 ntBASIC4.27□□□□□ -1.73
USP39Q53GS9 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC4.27□□□□□ -1.73
USP39Q53GS9 AC096632.1-201ENST00000427395 310 ntBASIC4.27□□□□□ -1.73
USP39Q53GS9 MTATP6P16-201ENST00000434543 526 ntBASIC4.27□□□□□ -1.73
USP39Q53GS9 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC4.27□□□□□ -1.73
USP39Q53GS9 RPL23AP46-201ENST00000438548 490 ntBASIC4.27□□□□□ -1.73
USP39Q53GS9 AC013460.1-205ENST00000450695 518 ntTSL 4 BASIC4.27□□□□□ -1.73
USP39Q53GS9 ELOCP24-201ENST00000456370 334 ntBASIC4.27□□□□□ -1.73
USP39Q53GS9 RPS29P15-201ENST00000458329 171 ntBASIC4.27□□□□□ -1.73
USP39Q53GS9 RNU7-180P-201ENST00000459240 63 ntBASIC4.27□□□□□ -1.73
USP39Q53GS9 MTATP8P1-201ENST00000467115 207 ntBASIC4.27□□□□□ -1.73
USP39Q53GS9 RPL23AP11-201ENST00000475260 469 ntBASIC4.27□□□□□ -1.73
USP39Q53GS9 RPL21P103-201ENST00000479921 488 ntBASIC4.27□□□□□ -1.73
USP39Q53GS9 AC083904.1-201ENST00000487828 231 ntBASIC4.27□□□□□ -1.73
USP39Q53GS9 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC4.27□□□□□ -1.73
USP39Q53GS9 IGKV1OR2-1-201ENST00000514060 354 ntBASIC4.27□□□□□ -1.73
USP39Q53GS9 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC4.27□□□□□ -1.73
USP39Q53GS9 RN7SKP96-201ENST00000516948 297 ntBASIC4.27□□□□□ -1.73
USP39Q53GS9 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC4.27□□□□□ -1.73
USP39Q53GS9 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC4.27□□□□□ -1.73
USP39Q53GS9 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC4.27□□□□□ -1.73
USP39Q53GS9 AP003497.1-201ENST00000528472 562 ntBASIC4.27□□□□□ -1.73
USP39Q53GS9 AC084838.1-201ENST00000532973 312 ntTSL 3 BASIC4.27□□□□□ -1.73
USP39Q53GS9 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC4.27□□□□□ -1.73
USP39Q53GS9 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC4.27□□□□□ -1.73
USP39Q53GS9 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC4.27□□□□□ -1.73
USP39Q53GS9 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC4.27□□□□□ -1.73
USP39Q53GS9 MIR4775-201ENST00000581168 75 ntBASIC4.27□□□□□ -1.73
USP39Q53GS9 BNIP3P25-201ENST00000596023 559 ntBASIC4.27□□□□□ -1.73
USP39Q53GS9 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC4.27□□□□□ -1.73
USP39Q53GS9 AC103710.2-201ENST00000609912 942 ntBASIC4.27□□□□□ -1.73
USP39Q53GS9 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC4.27□□□□□ -1.73
USP39Q53GS9 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC4.27□□□□□ -1.73
USP39Q53GS9 AC007546.2-201ENST00000623996 360 ntBASIC4.27□□□□□ -1.73
USP39Q53GS9 AC112200.1-201ENST00000625015 234 ntBASIC4.27□□□□□ -1.73
USP39Q53GS9 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC4.27□□□□□ -1.73
USP39Q53GS9 ZNF33CP-201ENST00000432492 2030 ntBASIC4.27□□□□□ -1.73
USP39Q53GS9 AL356489.2-201ENST00000566968 3528 ntBASIC4.27□□□□□ -1.73
USP39Q53GS9 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC4.27□□□□□ -1.73
USP39Q53GS9 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC4.27□□□□□ -1.73
USP39Q53GS9 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC4.27□□□□□ -1.73
USP39Q53GS9 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC4.27□□□□□ -1.73
USP39Q53GS9 AP001350.1-201ENST00000601906 1524 ntBASIC4.26□□□□□ -1.73
USP39Q53GS9 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
USP39Q53GS9 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
USP39Q53GS9 RNU6-1188P-201ENST00000363795 107 ntBASIC4.26□□□□□ -1.73
USP39Q53GS9 PARD3-204ENST00000374768 799 ntTSL 3 BASIC4.26□□□□□ -1.73
USP39Q53GS9 RNU6-1013P-201ENST00000384180 107 ntBASIC4.26□□□□□ -1.73
USP39Q53GS9 RNU6-1207P-201ENST00000384343 107 ntBASIC4.26□□□□□ -1.73
USP39Q53GS9 DSTNP4-201ENST00000399472 474 ntBASIC4.26□□□□□ -1.73
USP39Q53GS9 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC4.26□□□□□ -1.73
USP39Q53GS9 EIF4EP1-201ENST00000422311 642 ntBASIC4.26□□□□□ -1.73
USP39Q53GS9 RPL36P19-201ENST00000430744 301 ntBASIC4.26□□□□□ -1.73
USP39Q53GS9 AC010132.1-201ENST00000433315 561 ntTSL 4 BASIC4.26□□□□□ -1.73
USP39Q53GS9 AC093156.1-201ENST00000440382 670 ntBASIC4.26□□□□□ -1.73
USP39Q53GS9 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
USP39Q53GS9 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC4.26□□□□□ -1.73
USP39Q53GS9 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC4.26□□□□□ -1.73
USP39Q53GS9 AL118520.1-201ENST00000450770 291 ntBASIC4.26□□□□□ -1.73
USP39Q53GS9 AC107399.1-201ENST00000451226 265 ntBASIC4.26□□□□□ -1.73
USP39Q53GS9 MTCO3P10-201ENST00000455912 772 ntBASIC4.26□□□□□ -1.73
USP39Q53GS9 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC4.26□□□□□ -1.73
USP39Q53GS9 HMGB1P30-201ENST00000492455 606 ntBASIC4.26□□□□□ -1.73
USP39Q53GS9 AC020893.1-201ENST00000502452 580 ntBASIC4.26□□□□□ -1.73
USP39Q53GS9 MTCYBP40-201ENST00000509390 1135 ntBASIC4.26□□□□□ -1.73
USP39Q53GS9 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC4.26□□□□□ -1.73
USP39Q53GS9 AC098591.2-201ENST00000510152 315 ntBASIC4.26□□□□□ -1.73
USP39Q53GS9 VWA8P1-201ENST00000510889 176 ntBASIC4.26□□□□□ -1.73
USP39Q53GS9 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
USP39Q53GS9 FTH1P21-201ENST00000512179 511 ntBASIC4.26□□□□□ -1.73
USP39Q53GS9 RN7SKP295-201ENST00000517264 153 ntBASIC4.26□□□□□ -1.73
USP39Q53GS9 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC4.26□□□□□ -1.73
USP39Q53GS9 AP000889.2-201ENST00000532684 490 ntBASIC4.26□□□□□ -1.73
USP39Q53GS9 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC4.26□□□□□ -1.73
USP39Q53GS9 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC4.26□□□□□ -1.73
USP39Q53GS9 AC128657.1-201ENST00000549459 145 ntBASIC4.26□□□□□ -1.73
USP39Q53GS9 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC4.26□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 130.5 ms