Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC1.98□□□□□ -2.09
CCDC88AQ3V6T2 ZMYM4-AS1-201ENST00000432683 459 ntTSL 2 BASIC1.98□□□□□ -2.09
CCDC88AQ3V6T2 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC1.98□□□□□ -2.09
CCDC88AQ3V6T2 HMGN1P7-201ENST00000491722 313 ntBASIC1.98□□□□□ -2.09
CCDC88AQ3V6T2 PRELID3BP4-201ENST00000515476 571 ntBASIC1.98□□□□□ -2.09
CCDC88AQ3V6T2 RNA5SP220-201ENST00000516298 104 ntBASIC1.98□□□□□ -2.09
CCDC88AQ3V6T2 MED28P6-201ENST00000558776 231 ntBASIC1.98□□□□□ -2.09
CCDC88AQ3V6T2 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC1.98□□□□□ -2.09
CCDC88AQ3V6T2 SNORD53B-201ENST00000577887 78 ntBASIC1.98□□□□□ -2.09
CCDC88AQ3V6T2 AC018926.3-201ENST00000618841 406 ntBASIC1.98□□□□□ -2.09
CCDC88AQ3V6T2 AL353770.2-201ENST00000620024 78 ntBASIC1.98□□□□□ -2.09
CCDC88AQ3V6T2 LINC02246-204ENST00000625278 740 ntTSL 5 BASIC1.98□□□□□ -2.09
CCDC88AQ3V6T2 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC1.97□□□□□ -2.09
CCDC88AQ3V6T2 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC1.97□□□□□ -2.09
CCDC88AQ3V6T2 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC1.97□□□□□ -2.09
CCDC88AQ3V6T2 SNORA16.1-201ENST00000364597 132 ntBASIC1.97□□□□□ -2.09
CCDC88AQ3V6T2 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
CCDC88AQ3V6T2 RNU6-1197P-201ENST00000391183 107 ntBASIC1.97□□□□□ -2.09
CCDC88AQ3V6T2 EZH2P1-201ENST00000431167 291 ntBASIC1.97□□□□□ -2.09
CCDC88AQ3V6T2 MAP3K13-207ENST00000438798 388 ntTSL 2 BASIC1.97□□□□□ -2.09
CCDC88AQ3V6T2 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC1.97□□□□□ -2.09
CCDC88AQ3V6T2 MTCO1P31-201ENST00000506355 492 ntBASIC1.97□□□□□ -2.09
CCDC88AQ3V6T2 OR5AK1P-201ENST00000524837 922 ntBASIC1.97□□□□□ -2.09
CCDC88AQ3V6T2 AC124293.1-201ENST00000530034 493 ntBASIC1.97□□□□□ -2.09
CCDC88AQ3V6T2 AC007115.1-201ENST00000546853 234 ntBASIC1.97□□□□□ -2.09
CCDC88AQ3V6T2 NBEAP1-201ENST00000554452 979 ntBASIC1.97□□□□□ -2.09
CCDC88AQ3V6T2 AL136298.1-201ENST00000557371 566 ntTSL 3 BASIC1.97□□□□□ -2.09
CCDC88AQ3V6T2 AC067805.1-201ENST00000559344 470 ntBASIC1.97□□□□□ -2.09
CCDC88AQ3V6T2 AC063944.1-210ENST00000593837 519 ntTSL 5 BASIC1.97□□□□□ -2.09
CCDC88AQ3V6T2 AC008568.2-201ENST00000623862 2313 ntBASIC1.97□□□□□ -2.09
CCDC88AQ3V6T2 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC1.97□□□□□ -2.09
CCDC88AQ3V6T2 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC1.97□□□□□ -2.09
CCDC88AQ3V6T2 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC1.97□□□□□ -2.09
CCDC88AQ3V6T2 STAT4-203ENST00000409995 709 ntTSL 5 BASIC1.97□□□□□ -2.09
CCDC88AQ3V6T2 AC114973.1-201ENST00000429057 632 ntBASIC1.97□□□□□ -2.09
CCDC88AQ3V6T2 AC092839.2-201ENST00000431130 377 ntTSL 3 BASIC1.97□□□□□ -2.09
CCDC88AQ3V6T2 IFNA20P-201ENST00000436840 528 ntBASIC1.97□□□□□ -2.09
CCDC88AQ3V6T2 LNCSRLR-201ENST00000490375 709 ntTSL 3 BASIC1.97□□□□□ -2.09
CCDC88AQ3V6T2 MTCO3P44-201ENST00000510977 541 ntBASIC1.97□□□□□ -2.09
CCDC88AQ3V6T2 RNU4ATAC10P-201ENST00000516967 122 ntBASIC1.97□□□□□ -2.09
CCDC88AQ3V6T2 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC1.97□□□□□ -2.09
CCDC88AQ3V6T2 AC004217.3-201ENST00000551552 878 ntBASIC1.97□□□□□ -2.09
CCDC88AQ3V6T2 AC008015.1-201ENST00000555505 465 ntBASIC1.97□□□□□ -2.09
CCDC88AQ3V6T2 U6.107-201ENST00000637108 79 ntBASIC1.97□□□□□ -2.09
CCDC88AQ3V6T2 SEC63P2-201ENST00000503863 1939 ntBASIC1.96□□□□□ -2.1
CCDC88AQ3V6T2 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.1
CCDC88AQ3V6T2 AL590084.1-201ENST00000407885 387 ntBASIC1.96□□□□□ -2.1
CCDC88AQ3V6T2 POLHP1-201ENST00000411806 470 ntBASIC1.96□□□□□ -2.1
CCDC88AQ3V6T2 MTCYBP45-201ENST00000435243 565 ntBASIC1.96□□□□□ -2.1
CCDC88AQ3V6T2 AL121871.1-201ENST00000443413 436 ntBASIC1.96□□□□□ -2.1
CCDC88AQ3V6T2 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC1.96□□□□□ -2.1
CCDC88AQ3V6T2 ZBTB8OS-205ENST00000465588 548 ntTSL 2 BASIC1.96□□□□□ -2.1
CCDC88AQ3V6T2 AC015724.1-201ENST00000478577 156 ntBASIC1.96□□□□□ -2.1
CCDC88AQ3V6T2 GYPA-204ENST00000504786 357 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
CCDC88AQ3V6T2 OTUD4-208ENST00000509620 864 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
CCDC88AQ3V6T2 RNU1-92P-201ENST00000517017 135 ntBASIC1.96□□□□□ -2.1
CCDC88AQ3V6T2 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC1.96□□□□□ -2.1
CCDC88AQ3V6T2 AC025918.2-201ENST00000558683 763 ntBASIC1.96□□□□□ -2.1
CCDC88AQ3V6T2 AC055876.5-201ENST00000605667 259 ntBASIC1.96□□□□□ -2.1
CCDC88AQ3V6T2 AL161734.1-201ENST00000609720 557 ntBASIC1.96□□□□□ -2.1
CCDC88AQ3V6T2 MIR6734-201ENST00000621166 68 ntBASIC1.96□□□□□ -2.1
CCDC88AQ3V6T2 DUXAP9-208ENST00000622815 614 ntBASIC1.96□□□□□ -2.1
CCDC88AQ3V6T2 OR4G1P-203ENST00000641984 1631 ntBASIC1.96□□□□□ -2.1
CCDC88AQ3V6T2 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC1.96□□□□□ -2.1
CCDC88AQ3V6T2 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC1.95□□□□□ -2.1
CCDC88AQ3V6T2 RNA5SP325-201ENST00000363756 130 ntBASIC1.95□□□□□ -2.1
CCDC88AQ3V6T2 Y_RNA.327-201ENST00000365201 102 ntBASIC1.95□□□□□ -2.1
CCDC88AQ3V6T2 SNORA51.6-201ENST00000384151 125 ntBASIC1.95□□□□□ -2.1
CCDC88AQ3V6T2 RNA5SP38-201ENST00000410750 119 ntBASIC1.95□□□□□ -2.1
CCDC88AQ3V6T2 RNU6-272P-201ENST00000411028 104 ntBASIC1.95□□□□□ -2.1
CCDC88AQ3V6T2 AL049765.1-201ENST00000416237 573 ntTSL 5 BASIC1.95□□□□□ -2.1
CCDC88AQ3V6T2 MORF4L1P7-201ENST00000426038 703 ntBASIC1.95□□□□□ -2.1
CCDC88AQ3V6T2 AC064874.1-202ENST00000440101 287 ntTSL 3 BASIC1.95□□□□□ -2.1
CCDC88AQ3V6T2 UBBP3-201ENST00000445497 241 ntBASIC1.95□□□□□ -2.1
CCDC88AQ3V6T2 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC1.95□□□□□ -2.1
CCDC88AQ3V6T2 AL592161.1-201ENST00000456389 861 ntTSL 3 BASIC1.95□□□□□ -2.1
CCDC88AQ3V6T2 AC010285.1-201ENST00000470580 392 ntBASIC1.95□□□□□ -2.1
CCDC88AQ3V6T2 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC1.95□□□□□ -2.1
CCDC88AQ3V6T2 AC008739.2-201ENST00000597006 317 ntBASIC1.95□□□□□ -2.1
CCDC88AQ3V6T2 AC068831.7-201ENST00000616954 363 ntBASIC1.95□□□□□ -2.1
CCDC88AQ3V6T2 AL360181.4-201ENST00000621752 134 ntBASIC1.95□□□□□ -2.1
CCDC88AQ3V6T2 AC092608.3-201ENST00000625017 386 ntBASIC1.95□□□□□ -2.1
CCDC88AQ3V6T2 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC1.95□□□□□ -2.1
CCDC88AQ3V6T2 AC099654.7-201ENST00000635788 2127 ntBASIC1.95□□□□□ -2.1
CCDC88AQ3V6T2 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.95□□□□□ -2.1
CCDC88AQ3V6T2 AC103710.2-202ENST00000641454 2853 ntBASIC1.95□□□□□ -2.1
CCDC88AQ3V6T2 AC130650.2-201ENST00000618736 2403 ntBASIC1.94□□□□□ -2.1
CCDC88AQ3V6T2 ENSAP3-201ENST00000312710 333 ntBASIC1.94□□□□□ -2.1
CCDC88AQ3V6T2 RNU6-1339P-201ENST00000363574 91 ntBASIC1.94□□□□□ -2.1
CCDC88AQ3V6T2 BX510359.4-201ENST00000423750 193 ntBASIC1.94□□□□□ -2.1
CCDC88AQ3V6T2 HMGN2P38-201ENST00000423806 265 ntBASIC1.94□□□□□ -2.1
CCDC88AQ3V6T2 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC1.94□□□□□ -2.1
CCDC88AQ3V6T2 OFD1P12Y-201ENST00000427963 1207 ntBASIC1.94□□□□□ -2.1
CCDC88AQ3V6T2 OFD1P13Y-201ENST00000431179 1232 ntBASIC1.94□□□□□ -2.1
CCDC88AQ3V6T2 MOB1AP2-201ENST00000446060 614 ntBASIC1.94□□□□□ -2.1
CCDC88AQ3V6T2 COX6CP14-201ENST00000469580 174 ntBASIC1.94□□□□□ -2.1
CCDC88AQ3V6T2 VPS26AP1-201ENST00000483197 979 ntBASIC1.94□□□□□ -2.1
CCDC88AQ3V6T2 MRPL42P6-201ENST00000486397 371 ntBASIC1.94□□□□□ -2.1
CCDC88AQ3V6T2 OR5BM1P-201ENST00000512021 366 ntBASIC1.94□□□□□ -2.1
CCDC88AQ3V6T2 RNU6-1282P-201ENST00000516735 96 ntBASIC1.94□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 112 ms