Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 AC005300.1-201ENST00000428401 373 ntBASIC3.81□□□□□ -1.8
CIITAP33076 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC3.81□□□□□ -1.8
CIITAP33076 AC005326.1-201ENST00000429197 123 ntBASIC3.81□□□□□ -1.8
CIITAP33076 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC3.81□□□□□ -1.8
CIITAP33076 MTND4LP10-201ENST00000435146 291 ntBASIC3.81□□□□□ -1.8
CIITAP33076 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC3.81□□□□□ -1.8
CIITAP33076 ARPC3P1-201ENST00000437218 533 ntBASIC3.81□□□□□ -1.8
CIITAP33076 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
CIITAP33076 AC008264.1-201ENST00000447612 367 ntBASIC3.81□□□□□ -1.8
CIITAP33076 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC3.81□□□□□ -1.8
CIITAP33076 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC3.81□□□□□ -1.8
CIITAP33076 PRSS3P4-201ENST00000453323 162 ntBASIC3.81□□□□□ -1.8
CIITAP33076 AC093278.1-201ENST00000494700 600 ntBASIC3.81□□□□□ -1.8
CIITAP33076 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC3.81□□□□□ -1.8
CIITAP33076 AC074250.1-201ENST00000511117 192 ntBASIC3.81□□□□□ -1.8
CIITAP33076 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC3.81□□□□□ -1.8
CIITAP33076 AC017037.2-201ENST00000513850 890 ntBASIC3.81□□□□□ -1.8
CIITAP33076 RNU6-445P-201ENST00000516949 107 ntBASIC3.81□□□□□ -1.8
CIITAP33076 RNU6-1220P-201ENST00000517126 108 ntBASIC3.81□□□□□ -1.8
CIITAP33076 AP001893.2-201ENST00000526949 202 ntBASIC3.81□□□□□ -1.8
CIITAP33076 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC3.81□□□□□ -1.8
CIITAP33076 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC3.81□□□□□ -1.8
CIITAP33076 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC3.81□□□□□ -1.8
CIITAP33076 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC3.81□□□□□ -1.8
CIITAP33076 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC3.81□□□□□ -1.8
CIITAP33076 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
CIITAP33076 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC3.81□□□□□ -1.8
CIITAP33076 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC3.81□□□□□ -1.8
CIITAP33076 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
CIITAP33076 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.81□□□□□ -1.8
CIITAP33076 Z83843.1-201ENST00000604070 3685 ntBASIC3.8□□□□□ -1.8
CIITAP33076 AC011460.1-201ENST00000636268 1834 ntBASIC3.8□□□□□ -1.8
CIITAP33076 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
CIITAP33076 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
CIITAP33076 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
CIITAP33076 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
CIITAP33076 Y_RNA.88-201ENST00000363029 99 ntBASIC3.8□□□□□ -1.8
CIITAP33076 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC3.8□□□□□ -1.8
CIITAP33076 Y_RNA.450-201ENST00000384198 113 ntBASIC3.8□□□□□ -1.8
CIITAP33076 RNU6-114P-201ENST00000384704 105 ntBASIC3.8□□□□□ -1.8
CIITAP33076 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC3.8□□□□□ -1.8
CIITAP33076 AC022028.1-201ENST00000412054 408 ntBASIC3.8□□□□□ -1.8
CIITAP33076 TOMM22P1-201ENST00000418578 312 ntBASIC3.8□□□□□ -1.8
CIITAP33076 AL137014.1-201ENST00000420490 1226 ntBASIC3.8□□□□□ -1.8
CIITAP33076 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC3.8□□□□□ -1.8
CIITAP33076 AL158156.1-201ENST00000422509 473 ntBASIC3.8□□□□□ -1.8
CIITAP33076 AC007283.2-201ENST00000424739 197 ntBASIC3.8□□□□□ -1.8
CIITAP33076 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC3.8□□□□□ -1.8
CIITAP33076 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC3.8□□□□□ -1.8
CIITAP33076 AC000111.3-201ENST00000433478 193 ntBASIC3.8□□□□□ -1.8
CIITAP33076 AC112653.1-201ENST00000443851 386 ntBASIC3.8□□□□□ -1.8
CIITAP33076 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC3.8□□□□□ -1.8
CIITAP33076 AL136097.1-201ENST00000456945 913 ntBASIC3.8□□□□□ -1.8
CIITAP33076 RPL21P10-201ENST00000463521 490 ntBASIC3.8□□□□□ -1.8
CIITAP33076 RPL23AP67-201ENST00000465341 474 ntBASIC3.8□□□□□ -1.8
CIITAP33076 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC3.8□□□□□ -1.8
CIITAP33076 THAP6-203ENST00000502620 582 ntTSL 3 BASIC3.8□□□□□ -1.8
CIITAP33076 AC010587.1-201ENST00000505809 469 ntBASIC3.8□□□□□ -1.8
CIITAP33076 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC3.8□□□□□ -1.8
CIITAP33076 AC004062.1-201ENST00000509926 645 ntBASIC3.8□□□□□ -1.8
CIITAP33076 NRON-201ENST00000517270 370 ntBASIC3.8□□□□□ -1.8
CIITAP33076 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC3.8□□□□□ -1.8
CIITAP33076 SETP7-201ENST00000552169 453 ntBASIC3.8□□□□□ -1.8
CIITAP33076 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC3.8□□□□□ -1.8
CIITAP33076 AP005205.1-201ENST00000563503 508 ntBASIC3.8□□□□□ -1.8
CIITAP33076 AL590099.1-201ENST00000615276 138 ntBASIC3.8□□□□□ -1.8
CIITAP33076 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
CIITAP33076 AC002550.2-201ENST00000621246 394 ntBASIC3.8□□□□□ -1.8
CIITAP33076 AL360181.4-201ENST00000621752 134 ntBASIC3.8□□□□□ -1.8
CIITAP33076 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC3.8□□□□□ -1.8
CIITAP33076 LRRC77P-213ENST00000637727 880 ntBASIC3.8□□□□□ -1.8
CIITAP33076 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
CIITAP33076 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC3.8□□□□□ -1.8
CIITAP33076 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
CIITAP33076 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
CIITAP33076 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
CIITAP33076 AC004520.1-201ENST00000608362 1413 ntBASIC3.79□□□□□ -1.8
CIITAP33076 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
CIITAP33076 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.79□□□□□ -1.8
CIITAP33076 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.79□□□□□ -1.8
CIITAP33076 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
CIITAP33076 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
CIITAP33076 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
CIITAP33076 RNY4P16-201ENST00000364768 94 ntBASIC3.79□□□□□ -1.8
CIITAP33076 Y_RNA.409-201ENST00000383990 98 ntBASIC3.79□□□□□ -1.8
CIITAP33076 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
CIITAP33076 AL590002.1-201ENST00000406554 418 ntBASIC3.79□□□□□ -1.8
CIITAP33076 AC127391.1-201ENST00000411737 98 ntBASIC3.79□□□□□ -1.8
CIITAP33076 HMGN1P24-201ENST00000412282 298 ntBASIC3.79□□□□□ -1.8
CIITAP33076 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
CIITAP33076 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC3.79□□□□□ -1.8
CIITAP33076 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC3.79□□□□□ -1.8
CIITAP33076 AC133104.1-201ENST00000429100 218 ntBASIC3.79□□□□□ -1.8
CIITAP33076 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC3.79□□□□□ -1.8
CIITAP33076 FTH1P1-201ENST00000437933 532 ntBASIC3.79□□□□□ -1.8
CIITAP33076 AL353572.1-201ENST00000442490 417 ntBASIC3.79□□□□□ -1.8
CIITAP33076 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC3.79□□□□□ -1.8
CIITAP33076 AC027673.1-201ENST00000456245 405 ntBASIC3.79□□□□□ -1.8
CIITAP33076 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC3.79□□□□□ -1.8
CIITAP33076 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC3.79□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 113.7 ms