Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 AC007687.1-201ENST00000602704 304 ntBASIC3.26□□□□□ -1.89
HOXD3P31249 AC025946.2-201ENST00000603398 234 ntBASIC3.26□□□□□ -1.89
HOXD3P31249 AL161729.3-201ENST00000603533 673 ntBASIC3.26□□□□□ -1.89
HOXD3P31249 AL158032.1-201ENST00000605401 106 ntBASIC3.26□□□□□ -1.89
HOXD3P31249 AC007619.2-201ENST00000605743 379 ntBASIC3.26□□□□□ -1.89
HOXD3P31249 AC087045.1-201ENST00000605856 382 ntBASIC3.26□□□□□ -1.89
HOXD3P31249 AL121757.2-201ENST00000611223 313 ntBASIC3.26□□□□□ -1.89
HOXD3P31249 AC130324.3-201ENST00000614165 542 ntBASIC3.26□□□□□ -1.89
HOXD3P31249 AL133216.2-202ENST00000634512 349 ntBASIC3.26□□□□□ -1.89
HOXD3P31249 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC3.26□□□□□ -1.89
HOXD3P31249 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC3.26□□□□□ -1.89
HOXD3P31249 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC3.26□□□□□ -1.89
HOXD3P31249 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC3.25□□□□□ -1.89
HOXD3P31249 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
HOXD3P31249 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC3.25□□□□□ -1.89
HOXD3P31249 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
HOXD3P31249 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC3.25□□□□□ -1.89
HOXD3P31249 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.25□□□□□ -1.89
HOXD3P31249 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC3.25□□□□□ -1.89
HOXD3P31249 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC3.25□□□□□ -1.89
HOXD3P31249 RLIMP1-201ENST00000339626 1680 ntBASIC3.25□□□□□ -1.89
HOXD3P31249 AP004289.2-201ENST00000444413 1457 ntBASIC3.25□□□□□ -1.89
HOXD3P31249 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC3.25□□□□□ -1.89
HOXD3P31249 SNORA31-201ENST00000362607 130 ntBASIC3.25□□□□□ -1.89
HOXD3P31249 Y_RNA.184-201ENST00000363884 108 ntBASIC3.25□□□□□ -1.89
HOXD3P31249 RNU6-522P-201ENST00000364497 107 ntBASIC3.25□□□□□ -1.89
HOXD3P31249 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC3.25□□□□□ -1.89
HOXD3P31249 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC3.25□□□□□ -1.89
HOXD3P31249 PARD3-204ENST00000374768 799 ntTSL 3 BASIC3.25□□□□□ -1.89
HOXD3P31249 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
HOXD3P31249 RNU6-76P-201ENST00000384060 104 ntBASIC3.25□□□□□ -1.89
HOXD3P31249 RNA5SP372-201ENST00000390836 115 ntBASIC3.25□□□□□ -1.89
HOXD3P31249 HDGFP1-201ENST00000405943 252 ntBASIC3.25□□□□□ -1.89
HOXD3P31249 CYCSP19-201ENST00000411715 316 ntBASIC3.25□□□□□ -1.89
HOXD3P31249 AC092809.3-201ENST00000415453 231 ntBASIC3.25□□□□□ -1.89
HOXD3P31249 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC3.25□□□□□ -1.89
HOXD3P31249 MAP1LC3BP1-201ENST00000417653 379 ntBASIC3.25□□□□□ -1.89
HOXD3P31249 CYP4F29P-201ENST00000420685 446 ntBASIC3.25□□□□□ -1.89
HOXD3P31249 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC3.25□□□□□ -1.89
HOXD3P31249 MTCO3P46-201ENST00000425787 232 ntBASIC3.25□□□□□ -1.89
HOXD3P31249 MTCO1P39-201ENST00000426148 480 ntBASIC3.25□□□□□ -1.89
HOXD3P31249 AC024082.2-201ENST00000434771 238 ntBASIC3.25□□□□□ -1.89
HOXD3P31249 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC3.25□□□□□ -1.89
HOXD3P31249 RPL26P6-201ENST00000440913 438 ntBASIC3.25□□□□□ -1.89
HOXD3P31249 ABCF2P2-201ENST00000450549 296 ntBASIC3.25□□□□□ -1.89
HOXD3P31249 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC3.25□□□□□ -1.89
HOXD3P31249 FABP5P13-201ENST00000452144 328 ntBASIC3.25□□□□□ -1.89
HOXD3P31249 HMGN2P7-201ENST00000456186 273 ntBASIC3.25□□□□□ -1.89
HOXD3P31249 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC3.25□□□□□ -1.89
HOXD3P31249 AC007547.1-201ENST00000462177 490 ntBASIC3.25□□□□□ -1.89
HOXD3P31249 AC092451.1-201ENST00000480211 153 ntBASIC3.25□□□□□ -1.89
HOXD3P31249 AC104164.2-201ENST00000496953 495 ntBASIC3.25□□□□□ -1.89
HOXD3P31249 AC146944.2-203ENST00000502493 354 ntBASIC3.25□□□□□ -1.89
HOXD3P31249 AC117522.3-201ENST00000507974 584 ntBASIC3.25□□□□□ -1.89
HOXD3P31249 AC139495.1-202ENST00000513164 354 ntBASIC3.25□□□□□ -1.89
HOXD3P31249 RNU6-123P-201ENST00000516163 102 ntBASIC3.25□□□□□ -1.89
HOXD3P31249 SNORA67.7-201ENST00000516664 135 ntBASIC3.25□□□□□ -1.89
HOXD3P31249 TRAPPC2P2-201ENST00000517589 409 ntBASIC3.25□□□□□ -1.89
HOXD3P31249 AC105029.1-201ENST00000520250 669 ntBASIC3.25□□□□□ -1.89
HOXD3P31249 RPL7P20-201ENST00000520308 745 ntBASIC3.25□□□□□ -1.89
HOXD3P31249 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC3.25□□□□□ -1.89
HOXD3P31249 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC3.25□□□□□ -1.89
HOXD3P31249 AC093012.1-202ENST00000549403 582 ntBASIC3.25□□□□□ -1.89
HOXD3P31249 AL121576.1-201ENST00000556055 276 ntBASIC3.25□□□□□ -1.89
HOXD3P31249 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC3.25□□□□□ -1.89
HOXD3P31249 AC026464.5-201ENST00000562497 722 ntBASIC3.25□□□□□ -1.89
HOXD3P31249 AC037471.2-201ENST00000564941 598 ntBASIC3.25□□□□□ -1.89
HOXD3P31249 MIR4742-201ENST00000581069 85 ntBASIC3.25□□□□□ -1.89
HOXD3P31249 MIR3158-1-201ENST00000583596 81 ntBASIC3.25□□□□□ -1.89
HOXD3P31249 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC3.25□□□□□ -1.89
HOXD3P31249 AC243960.4-201ENST00000600532 288 ntBASIC3.25□□□□□ -1.89
HOXD3P31249 CTHRC1P1-201ENST00000605383 469 ntBASIC3.25□□□□□ -1.89
HOXD3P31249 RNU4-89P-201ENST00000607443 133 ntBASIC3.25□□□□□ -1.89
HOXD3P31249 AC093913.1-201ENST00000614178 329 ntBASIC3.25□□□□□ -1.89
HOXD3P31249 AC008013.2-202ENST00000637965 364 ntBASIC3.25□□□□□ -1.89
HOXD3P31249 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
HOXD3P31249 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC3.25□□□□□ -1.89
HOXD3P31249 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC3.25□□□□□ -1.89
HOXD3P31249 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC3.25□□□□□ -1.89
HOXD3P31249 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC3.24□□□□□ -1.89
HOXD3P31249 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
HOXD3P31249 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC3.24□□□□□ -1.89
HOXD3P31249 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
HOXD3P31249 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC3.24□□□□□ -1.89
HOXD3P31249 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
HOXD3P31249 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
HOXD3P31249 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
HOXD3P31249 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC3.24□□□□□ -1.89
HOXD3P31249 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC3.24□□□□□ -1.89
HOXD3P31249 RNU1-15P-201ENST00000353977 144 ntBASIC3.24□□□□□ -1.89
HOXD3P31249 Y_RNA.166-201ENST00000363730 102 ntBASIC3.24□□□□□ -1.89
HOXD3P31249 Y_RNA.167-201ENST00000363735 109 ntBASIC3.24□□□□□ -1.89
HOXD3P31249 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC3.24□□□□□ -1.89
HOXD3P31249 RNU6-116P-201ENST00000384042 109 ntBASIC3.24□□□□□ -1.89
HOXD3P31249 RNU6-550P-201ENST00000391057 101 ntBASIC3.24□□□□□ -1.89
HOXD3P31249 RN7SKP32-201ENST00000410167 303 ntBASIC3.24□□□□□ -1.89
HOXD3P31249 RNU2-37P-201ENST00000410695 177 ntBASIC3.24□□□□□ -1.89
HOXD3P31249 MTND3P8-201ENST00000412909 339 ntBASIC3.24□□□□□ -1.89
HOXD3P31249 OR6C66P-201ENST00000414917 930 ntBASIC3.24□□□□□ -1.89
HOXD3P31249 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC3.24□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 99 ms