Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AC019070.1-201ENST00000415008 1024 ntBASIC1.18□□□□□ -2.22
COL6A3P12111 Y_RNA.654-201ENST00000497848 106 ntBASIC1.18□□□□□ -2.22
COL6A3P12111 AC113155.1-201ENST00000511141 769 ntBASIC1.18□□□□□ -2.22
COL6A3P12111 AC074029.2-201ENST00000551045 634 ntBASIC1.18□□□□□ -2.22
COL6A3P12111 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC1.18□□□□□ -2.22
COL6A3P12111 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC1.18□□□□□ -2.22
COL6A3P12111 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC1.18□□□□□ -2.22
COL6A3P12111 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC1.18□□□□□ -2.22
COL6A3P12111 AC146944.4-201ENST00000602697 718 ntBASIC1.18□□□□□ -2.22
COL6A3P12111 PRKCQ-AS1-213ENST00000613985 883 ntTSL 5 BASIC1.18□□□□□ -2.22
COL6A3P12111 KBTBD2-208ENST00000621876 1196 ntTSL 5 BASIC1.18□□□□□ -2.22
COL6A3P12111 AP000648.3-201ENST00000623539 4507 ntBASIC1.18□□□□□ -2.22
COL6A3P12111 MIR532-201ENST00000385025 91 ntBASIC1.18□□□□□ -2.22
COL6A3P12111 CLIC4P1-201ENST00000453177 535 ntBASIC1.18□□□□□ -2.22
COL6A3P12111 LINC02488-201ENST00000504287 652 ntTSL 2 BASIC1.18□□□□□ -2.22
COL6A3P12111 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC1.18□□□□□ -2.22
COL6A3P12111 SETP2-201ENST00000553886 926 ntBASIC1.18□□□□□ -2.22
COL6A3P12111 AL159169.2-201ENST00000610061 1269 ntBASIC1.18□□□□□ -2.22
COL6A3P12111 AC048347.1-201ENST00000624621 427 ntBASIC1.18□□□□□ -2.22
COL6A3P12111 AC004808.1-201ENST00000627671 721 ntBASIC1.18□□□□□ -2.22
COL6A3P12111 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC1.17□□□□□ -2.22
COL6A3P12111 Y_RNA.170-201ENST00000363746 110 ntBASIC1.17□□□□□ -2.22
COL6A3P12111 RNA5SP205-201ENST00000364653 136 ntBASIC1.17□□□□□ -2.22
COL6A3P12111 RNA5SP465-201ENST00000391195 109 ntBASIC1.17□□□□□ -2.22
COL6A3P12111 TXNP7-201ENST00000406296 293 ntBASIC1.17□□□□□ -2.22
COL6A3P12111 MOB4-205ENST00000409916 829 ntTSL 3 BASIC1.17□□□□□ -2.22
COL6A3P12111 LINC01821-201ENST00000419786 1084 ntTSL 1 (best) BASIC1.17□□□□□ -2.22
COL6A3P12111 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC1.17□□□□□ -2.22
COL6A3P12111 NAA50-206ENST00000493454 964 ntTSL 2 BASIC1.17□□□□□ -2.22
COL6A3P12111 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC1.17□□□□□ -2.22
COL6A3P12111 AC007495.2-201ENST00000562822 459 ntTSL 3 BASIC1.17□□□□□ -2.22
COL6A3P12111 AC010200.2-201ENST00000605098 235 ntBASIC1.17□□□□□ -2.22
COL6A3P12111 ZNF37BP-203ENST00000452306 1352 ntBASIC1.17□□□□□ -2.22
COL6A3P12111 AL356776.1-201ENST00000406574 447 ntBASIC1.17□□□□□ -2.22
COL6A3P12111 AL357052.1-201ENST00000443504 381 ntTSL 3 BASIC1.17□□□□□ -2.22
COL6A3P12111 AC090096.1-201ENST00000489168 390 ntBASIC1.17□□□□□ -2.22
COL6A3P12111 AC104806.1-201ENST00000508720 308 ntBASIC1.17□□□□□ -2.22
COL6A3P12111 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC1.17□□□□□ -2.22
COL6A3P12111 AC090821.2-201ENST00000523552 176 ntBASIC1.17□□□□□ -2.22
COL6A3P12111 RNU6-222P-201ENST00000362438 107 ntBASIC1.16□□□□□ -2.22
COL6A3P12111 RNU1-109P-201ENST00000383960 147 ntBASIC1.16□□□□□ -2.22
COL6A3P12111 RNU2-22P-201ENST00000411266 212 ntBASIC1.16□□□□□ -2.22
COL6A3P12111 AC074117.2-201ENST00000417130 397 ntBASIC1.16□□□□□ -2.22
COL6A3P12111 Z95118.1-201ENST00000421372 247 ntBASIC1.16□□□□□ -2.22
COL6A3P12111 RPL21P39-201ENST00000463605 483 ntBASIC1.16□□□□□ -2.22
COL6A3P12111 RNA5SP67-201ENST00000516422 131 ntBASIC1.16□□□□□ -2.22
COL6A3P12111 RNA5SP364-201ENST00000516938 78 ntBASIC1.16□□□□□ -2.22
COL6A3P12111 MIR5589-201ENST00000579442 60 ntBASIC1.16□□□□□ -2.22
COL6A3P12111 MTRNR2L2-201ENST00000604882 87 ntBASIC1.16□□□□□ -2.22
COL6A3P12111 RNU6-39P-201ENST00000384344 107 ntBASIC1.16□□□□□ -2.22
COL6A3P12111 PGBD4P3-201ENST00000440731 581 ntBASIC1.16□□□□□ -2.22
COL6A3P12111 AC146507.1-201ENST00000468335 354 ntBASIC1.16□□□□□ -2.22
COL6A3P12111 MIR4636-201ENST00000582271 80 ntBASIC1.16□□□□□ -2.22
COL6A3P12111 MIR4295-201ENST00000585286 85 ntBASIC1.16□□□□□ -2.22
COL6A3P12111 AF230666.1-202ENST00000608375 870 ntTSL 5 BASIC1.16□□□□□ -2.22
COL6A3P12111 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.16□□□□□ -2.22
COL6A3P12111 Y_RNA.288-201ENST00000364854 92 ntBASIC1.16□□□□□ -2.22
COL6A3P12111 SNRPGP12-201ENST00000449481 213 ntBASIC1.16□□□□□ -2.22
COL6A3P12111 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC1.16□□□□□ -2.22
COL6A3P12111 SYF2P1-201ENST00000550658 413 ntBASIC1.16□□□□□ -2.22
COL6A3P12111 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC1.16□□□□□ -2.22
COL6A3P12111 AC002550.2-201ENST00000621246 394 ntBASIC1.16□□□□□ -2.22
COL6A3P12111 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC1.16□□□□□ -2.22
COL6A3P12111 SNRPGP3-201ENST00000469405 227 ntBASIC1.15□□□□□ -2.22
COL6A3P12111 AC008427.1-201ENST00000503102 655 ntBASIC1.15□□□□□ -2.22
COL6A3P12111 AC021755.4-201ENST00000616620 456 ntBASIC1.15□□□□□ -2.22
COL6A3P12111 MIR325HG-208ENST00000630388 1043 ntTSL 1 (best) BASIC1.15□□□□□ -2.22
COL6A3P12111 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC1.15□□□□□ -2.23
COL6A3P12111 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC1.15□□□□□ -2.23
COL6A3P12111 RNU6-1064P-201ENST00000410626 104 ntBASIC1.15□□□□□ -2.23
COL6A3P12111 SNX3P1X-201ENST00000414887 175 ntBASIC1.15□□□□□ -2.23
COL6A3P12111 AC005062.1-204ENST00000415499 743 ntTSL 3 BASIC1.15□□□□□ -2.23
COL6A3P12111 AL357078.2-201ENST00000416486 427 ntBASIC1.15□□□□□ -2.23
COL6A3P12111 RNA5SP233-201ENST00000459153 113 ntBASIC1.15□□□□□ -2.23
COL6A3P12111 SSR3-208ENST00000496050 579 ntTSL 4 BASIC1.15□□□□□ -2.23
COL6A3P12111 AC096571.1-202ENST00000506634 735 ntBASIC1.15□□□□□ -2.23
COL6A3P12111 MTND4LP22-201ENST00000508209 276 ntBASIC1.15□□□□□ -2.23
COL6A3P12111 DEFB108E-201ENST00000524692 240 ntBASIC1.15□□□□□ -2.23
COL6A3P12111 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC1.15□□□□□ -2.23
COL6A3P12111 AC006338.1-201ENST00000618453 749 ntBASIC1.15□□□□□ -2.23
COL6A3P12111 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC1.15□□□□□ -2.23
COL6A3P12111 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC1.15□□□□□ -2.23
COL6A3P12111 OR8H1-201ENST00000313022 1038 ntAPPRIS P2 BASIC1.14□□□□□ -2.23
COL6A3P12111 MIR1912-201ENST00000410389 80 ntBASIC1.14□□□□□ -2.23
COL6A3P12111 AC092754.2-201ENST00000463506 460 ntBASIC1.14□□□□□ -2.23
COL6A3P12111 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC1.14□□□□□ -2.23
COL6A3P12111 RNA5SP118-201ENST00000410385 109 ntBASIC1.14□□□□□ -2.23
COL6A3P12111 AC087808.1-201ENST00000520501 361 ntBASIC1.14□□□□□ -2.23
COL6A3P12111 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC1.14□□□□□ -2.23
COL6A3P12111 Y_RNA.610-201ENST00000410681 103 ntBASIC1.14□□□□□ -2.23
COL6A3P12111 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC1.14□□□□□ -2.23
COL6A3P12111 AC004941.2-201ENST00000427009 228 ntBASIC1.14□□□□□ -2.23
COL6A3P12111 MED14P1-201ENST00000430517 648 ntBASIC1.14□□□□□ -2.23
COL6A3P12111 AC024619.4-201ENST00000580924 316 ntBASIC1.14□□□□□ -2.23
COL6A3P12111 AC090617.7-201ENST00000623952 126 ntBASIC1.14□□□□□ -2.23
COL6A3P12111 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC1.13□□□□□ -2.23
COL6A3P12111 RNY4P24-201ENST00000362735 96 ntBASIC1.13□□□□□ -2.23
COL6A3P12111 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC1.13□□□□□ -2.23
COL6A3P12111 AL590233.1-201ENST00000430017 456 ntBASIC1.13□□□□□ -2.23
COL6A3P12111 SCARNA1-201ENST00000517138 166 ntBASIC1.13□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 116.4 ms