Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 SNORD56-201ENST00000413522 71 ntBASIC1.49□□□□□ -2.17
TNFP01375 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC1.49□□□□□ -2.17
TNFP01375 AL356867.1-201ENST00000429623 299 ntBASIC1.49□□□□□ -2.17
TNFP01375 ENOX1-AS2-201ENST00000434273 609 ntTSL 3 BASIC1.49□□□□□ -2.17
TNFP01375 AC024597.1-201ENST00000442753 706 ntTSL 5 BASIC1.49□□□□□ -2.17
TNFP01375 TTTY19-201ENST00000453955 269 ntTSL 1 (best) BASIC1.49□□□□□ -2.17
TNFP01375 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC1.49□□□□□ -2.17
TNFP01375 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC1.49□□□□□ -2.17
TNFP01375 MTND4LP3-201ENST00000468320 276 ntBASIC1.49□□□□□ -2.17
TNFP01375 AC055731.1-201ENST00000474387 401 ntBASIC1.49□□□□□ -2.17
TNFP01375 SNORA31.23-201ENST00000517219 133 ntBASIC1.49□□□□□ -2.17
TNFP01375 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC1.49□□□□□ -2.17
TNFP01375 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC1.49□□□□□ -2.17
TNFP01375 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC1.49□□□□□ -2.17
TNFP01375 FAM60CP-201ENST00000591086 664 ntBASIC1.49□□□□□ -2.17
TNFP01375 AC135507.1-201ENST00000607214 561 ntBASIC1.49□□□□□ -2.17
TNFP01375 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.49□□□□□ -2.17
TNFP01375 AC110491.2-201ENST00000624061 646 ntTSL 5 BASIC1.49□□□□□ -2.17
TNFP01375 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.49□□□□□ -2.17
TNFP01375 AP000648.3-201ENST00000623539 4507 ntBASIC1.48□□□□□ -2.17
TNFP01375 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC1.48□□□□□ -2.17
TNFP01375 ZNF209P-201ENST00000593450 2304 ntBASIC1.48□□□□□ -2.17
TNFP01375 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC1.48□□□□□ -2.17
TNFP01375 RNU6-989P-201ENST00000362756 107 ntBASIC1.48□□□□□ -2.17
TNFP01375 RNU4-31P-201ENST00000384211 141 ntBASIC1.48□□□□□ -2.17
TNFP01375 MIR1323-201ENST00000408090 73 ntBASIC1.48□□□□□ -2.17
TNFP01375 FCF1P2-201ENST00000415284 583 ntBASIC1.48□□□□□ -2.17
TNFP01375 XKRYP1-201ENST00000423438 492 ntBASIC1.48□□□□□ -2.17
TNFP01375 AC098614.2-201ENST00000426040 255 ntBASIC1.48□□□□□ -2.17
TNFP01375 AL445669.1-201ENST00000426743 755 ntBASIC1.48□□□□□ -2.17
TNFP01375 XKRYP2-201ENST00000432915 492 ntBASIC1.48□□□□□ -2.17
TNFP01375 YWHAZP8-201ENST00000436935 731 ntBASIC1.48□□□□□ -2.17
TNFP01375 AC009474.2-201ENST00000451383 136 ntBASIC1.48□□□□□ -2.17
TNFP01375 RGS5-217ENST00000451759 835 ntTSL 3 BASIC1.48□□□□□ -2.17
TNFP01375 OR52A4P-202ENST00000481634 799 ntBASIC1.48□□□□□ -2.17
TNFP01375 AC022447.3-201ENST00000506865 495 ntBASIC1.48□□□□□ -2.17
TNFP01375 OTUD4-208ENST00000509620 864 ntTSL 1 (best) BASIC1.48□□□□□ -2.17
TNFP01375 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC1.48□□□□□ -2.17
TNFP01375 AC107463.1-202ENST00000514526 689 ntTSL 2 BASIC1.48□□□□□ -2.17
TNFP01375 RNU1-92P-201ENST00000517017 135 ntBASIC1.48□□□□□ -2.17
TNFP01375 AL049870.4-201ENST00000555741 486 ntBASIC1.48□□□□□ -2.17
TNFP01375 AC016382.1-201ENST00000583580 387 ntTSL 3 BASIC1.48□□□□□ -2.17
TNFP01375 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC1.48□□□□□ -2.17
TNFP01375 AL355877.2-201ENST00000603670 358 ntBASIC1.48□□□□□ -2.17
TNFP01375 AL671511.2-201ENST00000611838 659 ntTSL 2 BASIC1.48□□□□□ -2.17
TNFP01375 HOTTIP_4.1-201ENST00000618195 165 ntBASIC1.48□□□□□ -2.17
TNFP01375 AC109809.1-201ENST00000619665 545 ntBASIC1.48□□□□□ -2.17
TNFP01375 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC1.48□□□□□ -2.17
TNFP01375 AL356118.1-201ENST00000635272 1078 ntBASIC1.48□□□□□ -2.17
TNFP01375 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC1.48□□□□□ -2.17
TNFP01375 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC1.48□□□□□ -2.17
TNFP01375 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
TNFP01375 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
TNFP01375 AC080128.1-201ENST00000474389 1917 ntBASIC1.47□□□□□ -2.17
TNFP01375 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC1.47□□□□□ -2.17
TNFP01375 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC1.47□□□□□ -2.17
TNFP01375 U8.14-201ENST00000390843 143 ntBASIC1.47□□□□□ -2.17
TNFP01375 DSTNP4-201ENST00000399472 474 ntBASIC1.47□□□□□ -2.17
TNFP01375 AL450338.1-201ENST00000407987 512 ntBASIC1.47□□□□□ -2.17
TNFP01375 RNU2-17P-201ENST00000410290 190 ntBASIC1.47□□□□□ -2.17
TNFP01375 RPS3AP9-201ENST00000417027 792 ntBASIC1.47□□□□□ -2.17
TNFP01375 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC1.47□□□□□ -2.17
TNFP01375 HMGB1P31-201ENST00000437242 427 ntBASIC1.47□□□□□ -2.17
TNFP01375 AC004383.1-201ENST00000438135 289 ntBASIC1.47□□□□□ -2.17
TNFP01375 MTCYBP3-201ENST00000445588 1137 ntBASIC1.47□□□□□ -2.17
TNFP01375 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC1.47□□□□□ -2.17
TNFP01375 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.47□□□□□ -2.17
TNFP01375 AC067904.2-201ENST00000517322 1283 ntBASIC1.47□□□□□ -2.17
TNFP01375 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC1.47□□□□□ -2.17
TNFP01375 AC092470.1-201ENST00000546187 132 ntBASIC1.47□□□□□ -2.17
TNFP01375 AC011260.1-201ENST00000578420 472 ntBASIC1.47□□□□□ -2.17
TNFP01375 AC013468.1-201ENST00000608680 598 ntBASIC1.47□□□□□ -2.17
TNFP01375 AC004908.2-201ENST00000609090 574 ntBASIC1.47□□□□□ -2.17
TNFP01375 uc_338.5-201ENST00000611839 155 ntBASIC1.47□□□□□ -2.17
TNFP01375 IL33-202ENST00000417746 2327 ntTSL 2 BASIC1.47□□□□□ -2.17
TNFP01375 AC103710.2-202ENST00000641454 2853 ntBASIC1.47□□□□□ -2.17
TNFP01375 AC025034.1-201ENST00000552778 1711 ntTSL 3 BASIC1.46□□□□□ -2.18
TNFP01375 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC1.46□□□□□ -2.18
TNFP01375 OR5T1-202ENST00000641665 1471 ntAPPRIS P1 BASIC1.46□□□□□ -2.18
TNFP01375 ZBTB8OSP1-201ENST00000342688 498 ntBASIC1.46□□□□□ -2.18
TNFP01375 RNU6-712P-201ENST00000410558 100 ntBASIC1.46□□□□□ -2.18
TNFP01375 AL445183.3-201ENST00000414168 502 ntBASIC1.46□□□□□ -2.18
TNFP01375 AL354695.1-201ENST00000427935 228 ntBASIC1.46□□□□□ -2.18
TNFP01375 FGF7P5-201ENST00000441829 291 ntBASIC1.46□□□□□ -2.18
TNFP01375 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC1.46□□□□□ -2.18
TNFP01375 BX322784.1-201ENST00000455793 1077 ntBASIC1.46□□□□□ -2.18
TNFP01375 ATG12P2-201ENST00000456830 416 ntBASIC1.46□□□□□ -2.18
TNFP01375 PPP1R2P5-201ENST00000457256 603 ntBASIC1.46□□□□□ -2.18
TNFP01375 KLF3P2-201ENST00000465138 268 ntBASIC1.46□□□□□ -2.18
TNFP01375 UBE2Q2P9-201ENST00000490086 202 ntBASIC1.46□□□□□ -2.18
TNFP01375 AC020699.1-201ENST00000505161 445 ntBASIC1.46□□□□□ -2.18
TNFP01375 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC1.46□□□□□ -2.18
TNFP01375 AC023141.11-201ENST00000508864 202 ntBASIC1.46□□□□□ -2.18
TNFP01375 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC1.46□□□□□ -2.18
TNFP01375 SPINK9-202ENST00000511717 604 ntAPPRIS ALT2 TSL 5 BASIC1.46□□□□□ -2.18
TNFP01375 Y_RNA.675-201ENST00000516389 149 ntBASIC1.46□□□□□ -2.18
TNFP01375 LY96-202ENST00000518893 430 ntTSL 3 BASIC1.46□□□□□ -2.18
TNFP01375 PTK2-220ENST00000520151 573 ntTSL 4 BASIC1.46□□□□□ -2.18
TNFP01375 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC1.46□□□□□ -2.18
TNFP01375 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC1.46□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 90.4 ms