Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC5.49□□□□□ -1.53
CCDC9Q9Y3X0 AC080125.1-201ENST00000414888 684 ntBASIC5.49□□□□□ -1.53
CCDC9Q9Y3X0 HMGB3P20-201ENST00000417997 600 ntBASIC5.49□□□□□ -1.53
CCDC9Q9Y3X0 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC5.49□□□□□ -1.53
CCDC9Q9Y3X0 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC5.49□□□□□ -1.53
CCDC9Q9Y3X0 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC5.49□□□□□ -1.53
CCDC9Q9Y3X0 CALM2P2-201ENST00000428512 440 ntBASIC5.49□□□□□ -1.53
CCDC9Q9Y3X0 RPL21P91-201ENST00000429231 479 ntBASIC5.49□□□□□ -1.53
CCDC9Q9Y3X0 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC5.49□□□□□ -1.53
CCDC9Q9Y3X0 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC5.49□□□□□ -1.53
CCDC9Q9Y3X0 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC5.49□□□□□ -1.53
CCDC9Q9Y3X0 MTND1P18-201ENST00000448191 573 ntBASIC5.49□□□□□ -1.53
CCDC9Q9Y3X0 SSXP4-201ENST00000451349 245 ntBASIC5.49□□□□□ -1.53
CCDC9Q9Y3X0 ANP32BP2-201ENST00000454525 545 ntBASIC5.49□□□□□ -1.53
CCDC9Q9Y3X0 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
CCDC9Q9Y3X0 RPL7P5-201ENST00000471472 736 ntBASIC5.49□□□□□ -1.53
CCDC9Q9Y3X0 APOOP4-201ENST00000513530 597 ntBASIC5.49□□□□□ -1.53
CCDC9Q9Y3X0 RNU6-1282P-201ENST00000516735 96 ntBASIC5.49□□□□□ -1.53
CCDC9Q9Y3X0 AC104383.1-201ENST00000530297 370 ntBASIC5.49□□□□□ -1.53
CCDC9Q9Y3X0 CYCSP30-201ENST00000546447 172 ntBASIC5.49□□□□□ -1.53
CCDC9Q9Y3X0 PSMA4-204ENST00000558094 651 ntTSL 3 BASIC5.49□□□□□ -1.53
CCDC9Q9Y3X0 AC025678.1-201ENST00000567861 338 ntBASIC5.49□□□□□ -1.53
CCDC9Q9Y3X0 MIR4775-201ENST00000581168 75 ntBASIC5.49□□□□□ -1.53
CCDC9Q9Y3X0 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC5.49□□□□□ -1.53
CCDC9Q9Y3X0 BNIP3P9-201ENST00000603714 553 ntBASIC5.49□□□□□ -1.53
CCDC9Q9Y3X0 AC107304.1-201ENST00000604229 296 ntBASIC5.49□□□□□ -1.53
CCDC9Q9Y3X0 AL161798.1-201ENST00000604630 131 ntBASIC5.49□□□□□ -1.53
CCDC9Q9Y3X0 AC090517.2-201ENST00000614966 680 ntBASIC5.49□□□□□ -1.53
CCDC9Q9Y3X0 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC5.49□□□□□ -1.53
CCDC9Q9Y3X0 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC5.49□□□□□ -1.53
CCDC9Q9Y3X0 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
CCDC9Q9Y3X0 DAOA-211ENST00000618629 1368 ntAPPRIS P3 TSL 5 BASIC5.49□□□□□ -1.53
CCDC9Q9Y3X0 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
CCDC9Q9Y3X0 AP001486.2-201ENST00000561652 5113 ntBASIC5.49□□□□□ -1.53
CCDC9Q9Y3X0 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC5.48□□□□□ -1.53
CCDC9Q9Y3X0 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC5.48□□□□□ -1.53
CCDC9Q9Y3X0 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC5.48□□□□□ -1.53
CCDC9Q9Y3X0 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC5.48□□□□□ -1.53
CCDC9Q9Y3X0 SCN1A-220ENST00000641603 12506 ntBASIC5.48□□□□□ -1.53
CCDC9Q9Y3X0 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
CCDC9Q9Y3X0 Y_RNA.381-201ENST00000365666 102 ntBASIC5.48□□□□□ -1.53
CCDC9Q9Y3X0 RNU6-780P-201ENST00000391030 104 ntBASIC5.48□□□□□ -1.53
CCDC9Q9Y3X0 AC092809.3-201ENST00000415453 231 ntBASIC5.48□□□□□ -1.53
CCDC9Q9Y3X0 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC5.48□□□□□ -1.53
CCDC9Q9Y3X0 AL606489.2-201ENST00000433886 234 ntBASIC5.48□□□□□ -1.53
CCDC9Q9Y3X0 UBE2V1P8-201ENST00000437166 265 ntBASIC5.48□□□□□ -1.53
CCDC9Q9Y3X0 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC5.48□□□□□ -1.53
CCDC9Q9Y3X0 AC078785.3-201ENST00000476607 425 ntBASIC5.48□□□□□ -1.53
CCDC9Q9Y3X0 RPL30P14-201ENST00000482744 348 ntBASIC5.48□□□□□ -1.53
CCDC9Q9Y3X0 AC104806.1-201ENST00000508720 308 ntBASIC5.48□□□□□ -1.53
CCDC9Q9Y3X0 AC105417.1-201ENST00000514691 285 ntBASIC5.48□□□□□ -1.53
CCDC9Q9Y3X0 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC5.48□□□□□ -1.53
CCDC9Q9Y3X0 RNU6-123P-201ENST00000516163 102 ntBASIC5.48□□□□□ -1.53
CCDC9Q9Y3X0 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC5.48□□□□□ -1.53
CCDC9Q9Y3X0 AC087672.2-201ENST00000522498 429 ntTSL 2 BASIC5.48□□□□□ -1.53
CCDC9Q9Y3X0 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC5.48□□□□□ -1.53
CCDC9Q9Y3X0 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC5.48□□□□□ -1.53
CCDC9Q9Y3X0 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC5.48□□□□□ -1.53
CCDC9Q9Y3X0 AC025165.5-201ENST00000602802 578 ntBASIC5.48□□□□□ -1.53
CCDC9Q9Y3X0 MIR6868-201ENST00000611215 58 ntBASIC5.48□□□□□ -1.53
CCDC9Q9Y3X0 UBE2Q2P6-201ENST00000612666 153 ntBASIC5.48□□□□□ -1.53
CCDC9Q9Y3X0 uc_338.11-201ENST00000619132 160 ntBASIC5.48□□□□□ -1.53
CCDC9Q9Y3X0 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC5.48□□□□□ -1.53
CCDC9Q9Y3X0 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC5.48□□□□□ -1.53
CCDC9Q9Y3X0 AC007256.1-201ENST00000392253 2765 ntBASIC5.48□□□□□ -1.53
CCDC9Q9Y3X0 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
CCDC9Q9Y3X0 AC118273.1-201ENST00000525324 3006 ntBASIC5.48□□□□□ -1.53
CCDC9Q9Y3X0 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
CCDC9Q9Y3X0 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC5.47□□□□□ -1.53
CCDC9Q9Y3X0 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
CCDC9Q9Y3X0 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC5.47□□□□□ -1.53
CCDC9Q9Y3X0 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC5.47□□□□□ -1.53
CCDC9Q9Y3X0 RNU6-1287P-201ENST00000362914 107 ntBASIC5.47□□□□□ -1.53
CCDC9Q9Y3X0 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC5.47□□□□□ -1.53
CCDC9Q9Y3X0 RNU6-1060P-201ENST00000384664 107 ntBASIC5.47□□□□□ -1.53
CCDC9Q9Y3X0 Y_RNA.576-201ENST00000384781 102 ntBASIC5.47□□□□□ -1.53
CCDC9Q9Y3X0 AL139397.2-201ENST00000404529 772 ntBASIC5.47□□□□□ -1.53
CCDC9Q9Y3X0 RAC1P3-201ENST00000416129 580 ntBASIC5.47□□□□□ -1.53
CCDC9Q9Y3X0 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC5.47□□□□□ -1.53
CCDC9Q9Y3X0 Z74021.1-201ENST00000423610 407 ntBASIC5.47□□□□□ -1.53
CCDC9Q9Y3X0 USP9YP18-201ENST00000425912 695 ntBASIC5.47□□□□□ -1.53
CCDC9Q9Y3X0 MTCO3P30-201ENST00000426425 670 ntBASIC5.47□□□□□ -1.53
CCDC9Q9Y3X0 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC5.47□□□□□ -1.53
CCDC9Q9Y3X0 AC006011.1-201ENST00000442758 349 ntBASIC5.47□□□□□ -1.53
CCDC9Q9Y3X0 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC5.47□□□□□ -1.53
CCDC9Q9Y3X0 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC5.47□□□□□ -1.53
CCDC9Q9Y3X0 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
CCDC9Q9Y3X0 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC5.47□□□□□ -1.53
CCDC9Q9Y3X0 RNU6-420P-201ENST00000458780 107 ntBASIC5.47□□□□□ -1.53
CCDC9Q9Y3X0 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC5.47□□□□□ -1.53
CCDC9Q9Y3X0 SNORA70.14-201ENST00000516205 110 ntBASIC5.47□□□□□ -1.53
CCDC9Q9Y3X0 Y_RNA.704-201ENST00000516851 102 ntBASIC5.47□□□□□ -1.53
CCDC9Q9Y3X0 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC5.47□□□□□ -1.53
CCDC9Q9Y3X0 OR5AQ1P-201ENST00000527596 927 ntBASIC5.47□□□□□ -1.53
CCDC9Q9Y3X0 AC103843.2-201ENST00000530523 682 ntBASIC5.47□□□□□ -1.53
CCDC9Q9Y3X0 AC006064.5-201ENST00000541782 248 ntBASIC5.47□□□□□ -1.53
CCDC9Q9Y3X0 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC5.47□□□□□ -1.53
CCDC9Q9Y3X0 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC5.47□□□□□ -1.53
CCDC9Q9Y3X0 AP005121.1-201ENST00000578243 469 ntTSL 3 BASIC5.47□□□□□ -1.53
CCDC9Q9Y3X0 AC093788.1-201ENST00000609356 927 ntBASIC5.47□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 80.2 ms