Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC1.57□□□□□ -2.16
SCN3AQ9NY46 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC1.57□□□□□ -2.16
SCN3AQ9NY46 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC1.57□□□□□ -2.16
SCN3AQ9NY46 AC103810.2-203ENST00000584959 631 ntTSL 5 BASIC1.57□□□□□ -2.16
SCN3AQ9NY46 AC091132.5-204ENST00000586348 630 ntTSL 3 BASIC1.57□□□□□ -2.16
SCN3AQ9NY46 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC1.57□□□□□ -2.16
SCN3AQ9NY46 AL035411.2-201ENST00000604022 421 ntBASIC1.57□□□□□ -2.16
SCN3AQ9NY46 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC1.57□□□□□ -2.16
SCN3AQ9NY46 AC112503.2-201ENST00000609005 552 ntBASIC1.57□□□□□ -2.16
SCN3AQ9NY46 AP006248.3-201ENST00000623580 594 ntBASIC1.57□□□□□ -2.16
SCN3AQ9NY46 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC1.57□□□□□ -2.16
SCN3AQ9NY46 MTCO1P18-201ENST00000455518 1419 ntBASIC1.57□□□□□ -2.16
SCN3AQ9NY46 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC1.57□□□□□ -2.16
SCN3AQ9NY46 CENPCP1-201ENST00000533085 2578 ntBASIC1.57□□□□□ -2.16
SCN3AQ9NY46 SPINT4-201ENST00000279058 512 ntAPPRIS P1 TSL 1 (best) BASIC1.57□□□□□ -2.16
SCN3AQ9NY46 AC083799.1-201ENST00000366451 910 ntBASIC1.57□□□□□ -2.16
SCN3AQ9NY46 CNIH4-201ENST00000366856 808 ntAPPRIS ALT1 TSL 2 BASIC1.57□□□□□ -2.16
SCN3AQ9NY46 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC1.57□□□□□ -2.16
SCN3AQ9NY46 SNORA6-201ENST00000384033 151 ntBASIC1.57□□□□□ -2.16
SCN3AQ9NY46 RNU6-339P-201ENST00000384310 107 ntBASIC1.57□□□□□ -2.16
SCN3AQ9NY46 SNORA26.9-201ENST00000391322 122 ntBASIC1.57□□□□□ -2.16
SCN3AQ9NY46 RPS3AP24-201ENST00000407896 734 ntBASIC1.57□□□□□ -2.16
SCN3AQ9NY46 RNA5SP56-201ENST00000410277 118 ntBASIC1.57□□□□□ -2.16
SCN3AQ9NY46 AL390879.2-204ENST00000438602 582 ntTSL 3 BASIC1.57□□□□□ -2.16
SCN3AQ9NY46 ZBTB8OS-205ENST00000465588 548 ntTSL 2 BASIC1.57□□□□□ -2.16
SCN3AQ9NY46 AC025181.1-201ENST00000477507 416 ntBASIC1.57□□□□□ -2.16
SCN3AQ9NY46 AL135752.1-201ENST00000479477 471 ntBASIC1.57□□□□□ -2.16
SCN3AQ9NY46 AC025768.1-201ENST00000510057 267 ntBASIC1.57□□□□□ -2.16
SCN3AQ9NY46 LINC01216-201ENST00000515728 824 ntTSL 5 BASIC1.57□□□□□ -2.16
SCN3AQ9NY46 RNU5F-8P-201ENST00000515941 111 ntBASIC1.57□□□□□ -2.16
SCN3AQ9NY46 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC1.57□□□□□ -2.16
SCN3AQ9NY46 AC087808.1-201ENST00000520501 361 ntBASIC1.57□□□□□ -2.16
SCN3AQ9NY46 AC113423.1-201ENST00000523279 289 ntTSL 3 BASIC1.57□□□□□ -2.16
SCN3AQ9NY46 AP000942.2-201ENST00000526310 628 ntTSL 3 BASIC1.57□□□□□ -2.16
SCN3AQ9NY46 MYL12A-202ENST00000536605 899 ntAPPRIS P1 TSL 1 (best) BASIC1.57□□□□□ -2.16
SCN3AQ9NY46 SPIC-201ENST00000551346 1132 ntAPPRIS P1 TSL 1 (best) BASIC1.57□□□□□ -2.16
SCN3AQ9NY46 MYL12A-209ENST00000580887 899 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
SCN3AQ9NY46 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.57□□□□□ -2.16
SCN3AQ9NY46 AC006329.2-201ENST00000611491 394 ntBASIC1.57□□□□□ -2.16
SCN3AQ9NY46 AL353997.5-201ENST00000618886 171 ntBASIC1.57□□□□□ -2.16
SCN3AQ9NY46 AC012640.5-201ENST00000623897 319 ntBASIC1.57□□□□□ -2.16
SCN3AQ9NY46 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
SCN3AQ9NY46 AC008568.2-201ENST00000623862 2313 ntBASIC1.56□□□□□ -2.16
SCN3AQ9NY46 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC1.56□□□□□ -2.16
SCN3AQ9NY46 SNORA27.3-201ENST00000364937 134 ntBASIC1.56□□□□□ -2.16
SCN3AQ9NY46 RNU6-1074P-201ENST00000383995 104 ntBASIC1.56□□□□□ -2.16
SCN3AQ9NY46 SNORA51.6-201ENST00000384151 125 ntBASIC1.56□□□□□ -2.16
SCN3AQ9NY46 SNORA51.12-201ENST00000384448 134 ntBASIC1.56□□□□□ -2.16
SCN3AQ9NY46 SNRPEP2-201ENST00000397592 279 ntBASIC1.56□□□□□ -2.16
SCN3AQ9NY46 AL009174.1-201ENST00000426577 416 ntBASIC1.56□□□□□ -2.16
SCN3AQ9NY46 ISCA1P6-201ENST00000427740 390 ntBASIC1.56□□□□□ -2.16
SCN3AQ9NY46 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC1.56□□□□□ -2.16
SCN3AQ9NY46 AC019330.1-202ENST00000440609 504 ntTSL 4 BASIC1.56□□□□□ -2.16
SCN3AQ9NY46 RAB11AP1-201ENST00000442978 646 ntBASIC1.56□□□□□ -2.16
SCN3AQ9NY46 SNRPGP6-201ENST00000451124 220 ntBASIC1.56□□□□□ -2.16
SCN3AQ9NY46 AC108734.3-201ENST00000481241 1165 ntBASIC1.56□□□□□ -2.16
SCN3AQ9NY46 KLRA1P-201ENST00000503499 986 ntBASIC1.56□□□□□ -2.16
SCN3AQ9NY46 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC1.56□□□□□ -2.16
SCN3AQ9NY46 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC1.56□□□□□ -2.16
SCN3AQ9NY46 CASP1P1-201ENST00000526345 212 ntBASIC1.56□□□□□ -2.16
SCN3AQ9NY46 PIH1D2-206ENST00000528775 1025 ntTSL 5 BASIC1.56□□□□□ -2.16
SCN3AQ9NY46 ZNF705CP-201ENST00000530515 889 ntBASIC1.56□□□□□ -2.16
SCN3AQ9NY46 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC1.56□□□□□ -2.16
SCN3AQ9NY46 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC1.56□□□□□ -2.16
SCN3AQ9NY46 MIR3117-201ENST00000584034 78 ntBASIC1.56□□□□□ -2.16
SCN3AQ9NY46 AL669831.4-202ENST00000590817 238 ntBASIC1.56□□□□□ -2.16
SCN3AQ9NY46 AC096586.1-201ENST00000610267 561 ntBASIC1.56□□□□□ -2.16
SCN3AQ9NY46 AC023490.1-202ENST00000620909 820 ntTSL 5 BASIC1.56□□□□□ -2.16
SCN3AQ9NY46 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC1.56□□□□□ -2.16
SCN3AQ9NY46 U3.40-201ENST00000408706 208 ntBASIC1.56□□□□□ -2.16
SCN3AQ9NY46 AL357833.2-201ENST00000426811 430 ntTSL 3 BASIC1.56□□□□□ -2.16
SCN3AQ9NY46 AC024082.2-201ENST00000434771 238 ntBASIC1.56□□□□□ -2.16
SCN3AQ9NY46 MTND4LP10-201ENST00000435146 291 ntBASIC1.56□□□□□ -2.16
SCN3AQ9NY46 GTF2IP7-202ENST00000436677 309 ntBASIC1.56□□□□□ -2.16
SCN3AQ9NY46 ARPC3P1-201ENST00000437218 533 ntBASIC1.56□□□□□ -2.16
SCN3AQ9NY46 COX6CP12-201ENST00000446748 202 ntBASIC1.56□□□□□ -2.16
SCN3AQ9NY46 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC1.56□□□□□ -2.16
SCN3AQ9NY46 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
SCN3AQ9NY46 MTCO2P9-201ENST00000503214 694 ntBASIC1.56□□□□□ -2.16
SCN3AQ9NY46 AC010273.1-201ENST00000504129 946 ntTSL 5 BASIC1.56□□□□□ -2.16
SCN3AQ9NY46 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC1.56□□□□□ -2.16
SCN3AQ9NY46 RNU6-1282P-201ENST00000516735 96 ntBASIC1.56□□□□□ -2.16
SCN3AQ9NY46 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC1.56□□□□□ -2.16
SCN3AQ9NY46 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC1.56□□□□□ -2.16
SCN3AQ9NY46 AC009127.3-201ENST00000570531 403 ntBASIC1.56□□□□□ -2.16
SCN3AQ9NY46 MIR1264-201ENST00000616374 69 ntBASIC1.56□□□□□ -2.16
SCN3AQ9NY46 HOTTIP_4.1-201ENST00000618195 165 ntBASIC1.56□□□□□ -2.16
SCN3AQ9NY46 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC1.56□□□□□ -2.16
SCN3AQ9NY46 AL354685.2-201ENST00000448218 1447 ntBASIC1.55□□□□□ -2.16
SCN3AQ9NY46 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC1.55□□□□□ -2.16
SCN3AQ9NY46 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC1.55□□□□□ -2.16
SCN3AQ9NY46 SNORA16.1-201ENST00000364597 132 ntBASIC1.55□□□□□ -2.16
SCN3AQ9NY46 U3.29-201ENST00000391296 212 ntBASIC1.55□□□□□ -2.16
SCN3AQ9NY46 NPM1P10-201ENST00000398310 865 ntBASIC1.55□□□□□ -2.16
SCN3AQ9NY46 AC079780.1-201ENST00000428259 207 ntBASIC1.55□□□□□ -2.16
SCN3AQ9NY46 Z82205.1-201ENST00000428456 297 ntBASIC1.55□□□□□ -2.16
SCN3AQ9NY46 AC092839.2-201ENST00000431130 377 ntTSL 3 BASIC1.55□□□□□ -2.16
SCN3AQ9NY46 OR6K5P-201ENST00000447050 945 ntBASIC1.55□□□□□ -2.16
SCN3AQ9NY46 AC092757.1-201ENST00000467293 467 ntBASIC1.55□□□□□ -2.16
SCN3AQ9NY46 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC1.55□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 134.7 ms