Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 BX510359.1-201ENST00000456973 237 ntBASIC3.2□□□□□ -1.9
SIX2Q9NPC8 SRRM1P2-201ENST00000464531 1192 ntBASIC3.2□□□□□ -1.9
SIX2Q9NPC8 RPL23AP41-201ENST00000484754 458 ntBASIC3.2□□□□□ -1.9
SIX2Q9NPC8 AC055855.1-201ENST00000489563 579 ntBASIC3.2□□□□□ -1.9
SIX2Q9NPC8 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC3.2□□□□□ -1.9
SIX2Q9NPC8 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC3.2□□□□□ -1.9
SIX2Q9NPC8 SNORA70.14-201ENST00000516205 110 ntBASIC3.2□□□□□ -1.9
SIX2Q9NPC8 Y_RNA.672-201ENST00000516289 104 ntBASIC3.2□□□□□ -1.9
SIX2Q9NPC8 RNU6-528P-201ENST00000516926 100 ntBASIC3.2□□□□□ -1.9
SIX2Q9NPC8 RNU6-430P-201ENST00000517078 107 ntBASIC3.2□□□□□ -1.9
SIX2Q9NPC8 MTCO2P4-201ENST00000517968 247 ntBASIC3.2□□□□□ -1.9
SIX2Q9NPC8 CR383656.7-201ENST00000548164 174 ntBASIC3.2□□□□□ -1.9
SIX2Q9NPC8 NTS-203ENST00000551529 801 ntTSL 3 BASIC3.2□□□□□ -1.9
SIX2Q9NPC8 AL356432.3-201ENST00000568952 465 ntBASIC3.2□□□□□ -1.9
SIX2Q9NPC8 MIR3682-201ENST00000581338 84 ntBASIC3.2□□□□□ -1.9
SIX2Q9NPC8 AL161729.4-201ENST00000604650 476 ntBASIC3.2□□□□□ -1.9
SIX2Q9NPC8 AL391813.2-201ENST00000609113 322 ntBASIC3.2□□□□□ -1.9
SIX2Q9NPC8 AC108747.1-201ENST00000609508 535 ntBASIC3.2□□□□□ -1.9
SIX2Q9NPC8 AC244100.1-202ENST00000621554 382 ntBASIC3.2□□□□□ -1.9
SIX2Q9NPC8 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC3.2□□□□□ -1.9
SIX2Q9NPC8 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
SIX2Q9NPC8 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC3.2□□□□□ -1.9
SIX2Q9NPC8 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC3.2□□□□□ -1.9
SIX2Q9NPC8 AC099654.12-201ENST00000639868 649 ntBASIC3.2□□□□□ -1.9
SIX2Q9NPC8 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
SIX2Q9NPC8 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC3.2□□□□□ -1.9
SIX2Q9NPC8 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.2□□□□□ -1.9
SIX2Q9NPC8 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.2□□□□□ -1.9
SIX2Q9NPC8 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.2□□□□□ -1.9
SIX2Q9NPC8 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
SIX2Q9NPC8 MTND5P26-201ENST00000426018 1752 ntBASIC3.2□□□□□ -1.9
SIX2Q9NPC8 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
SIX2Q9NPC8 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.19□□□□□ -1.9
SIX2Q9NPC8 ZNF826P-207ENST00000622273 1910 ntBASIC3.19□□□□□ -1.9
SIX2Q9NPC8 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.19□□□□□ -1.9
SIX2Q9NPC8 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC3.19□□□□□ -1.9
SIX2Q9NPC8 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.19□□□□□ -1.9
SIX2Q9NPC8 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
SIX2Q9NPC8 RN7SKP44-201ENST00000363602 316 ntBASIC3.19□□□□□ -1.9
SIX2Q9NPC8 RNU6-517P-201ENST00000384362 110 ntBASIC3.19□□□□□ -1.9
SIX2Q9NPC8 MIR34B-201ENST00000385076 84 ntBASIC3.19□□□□□ -1.9
SIX2Q9NPC8 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
SIX2Q9NPC8 EI24P2-201ENST00000397776 1076 ntBASIC3.19□□□□□ -1.9
SIX2Q9NPC8 RPS3AP36-201ENST00000398190 775 ntBASIC3.19□□□□□ -1.9
SIX2Q9NPC8 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC3.19□□□□□ -1.9
SIX2Q9NPC8 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC3.19□□□□□ -1.9
SIX2Q9NPC8 MTND1P9-201ENST00000453775 944 ntBASIC3.19□□□□□ -1.9
SIX2Q9NPC8 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC3.19□□□□□ -1.9
SIX2Q9NPC8 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC3.19□□□□□ -1.9
SIX2Q9NPC8 RPL9P33-201ENST00000484311 566 ntBASIC3.19□□□□□ -1.9
SIX2Q9NPC8 RN7SL283P-201ENST00000489055 303 ntBASIC3.19□□□□□ -1.9
SIX2Q9NPC8 AC012170.1-201ENST00000495139 359 ntBASIC3.19□□□□□ -1.9
SIX2Q9NPC8 AC105252.1-201ENST00000503089 286 ntBASIC3.19□□□□□ -1.9
SIX2Q9NPC8 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC3.19□□□□□ -1.9
SIX2Q9NPC8 AC091133.4-201ENST00000511142 308 ntBASIC3.19□□□□□ -1.9
SIX2Q9NPC8 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC3.19□□□□□ -1.9
SIX2Q9NPC8 OR5G4P-201ENST00000525251 760 ntBASIC3.19□□□□□ -1.9
SIX2Q9NPC8 AP000907.2-201ENST00000530827 353 ntBASIC3.19□□□□□ -1.9
SIX2Q9NPC8 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC3.19□□□□□ -1.9
SIX2Q9NPC8 AC016957.1-201ENST00000534895 309 ntBASIC3.19□□□□□ -1.9
SIX2Q9NPC8 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC3.19□□□□□ -1.9
SIX2Q9NPC8 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
SIX2Q9NPC8 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3.19□□□□□ -1.9
SIX2Q9NPC8 AC034105.3-201ENST00000565294 442 ntBASIC3.19□□□□□ -1.9
SIX2Q9NPC8 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC3.19□□□□□ -1.9
SIX2Q9NPC8 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC3.19□□□□□ -1.9
SIX2Q9NPC8 DUXAP4-201ENST00000603046 613 ntBASIC3.19□□□□□ -1.9
SIX2Q9NPC8 AC012669.1-201ENST00000603209 283 ntBASIC3.19□□□□□ -1.9
SIX2Q9NPC8 AC011451.2-201ENST00000604303 598 ntBASIC3.19□□□□□ -1.9
SIX2Q9NPC8 AC121334.2-201ENST00000605387 271 ntBASIC3.19□□□□□ -1.9
SIX2Q9NPC8 BX664608.1-201ENST00000610519 487 ntBASIC3.19□□□□□ -1.9
SIX2Q9NPC8 AC084757.4-201ENST00000616350 526 ntBASIC3.19□□□□□ -1.9
SIX2Q9NPC8 AC110994.2-201ENST00000635481 492 ntBASIC3.19□□□□□ -1.9
SIX2Q9NPC8 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC3.19□□□□□ -1.9
SIX2Q9NPC8 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC3.19□□□□□ -1.9
SIX2Q9NPC8 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
SIX2Q9NPC8 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
SIX2Q9NPC8 RN7SKP226-201ENST00000364912 300 ntBASIC3.18□□□□□ -1.9
SIX2Q9NPC8 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC3.18□□□□□ -1.9
SIX2Q9NPC8 PTMAP5-201ENST00000393073 333 ntBASIC3.18□□□□□ -1.9
SIX2Q9NPC8 RPA3-203ENST00000401447 414 ntTSL 3 BASIC3.18□□□□□ -1.9
SIX2Q9NPC8 RNU6-712P-201ENST00000410558 100 ntBASIC3.18□□□□□ -1.9
SIX2Q9NPC8 RN7SKP27-201ENST00000410684 333 ntBASIC3.18□□□□□ -1.9
SIX2Q9NPC8 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC3.18□□□□□ -1.9
SIX2Q9NPC8 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC3.18□□□□□ -1.9
SIX2Q9NPC8 AC233728.2-201ENST00000425348 757 ntBASIC3.18□□□□□ -1.9
SIX2Q9NPC8 FTH1P6-201ENST00000430768 320 ntBASIC3.18□□□□□ -1.9
SIX2Q9NPC8 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC3.18□□□□□ -1.9
SIX2Q9NPC8 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC3.18□□□□□ -1.9
SIX2Q9NPC8 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC3.18□□□□□ -1.9
SIX2Q9NPC8 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC3.18□□□□□ -1.9
SIX2Q9NPC8 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC3.18□□□□□ -1.9
SIX2Q9NPC8 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC3.18□□□□□ -1.9
SIX2Q9NPC8 AC034236.1-201ENST00000469891 373 ntBASIC3.18□□□□□ -1.9
SIX2Q9NPC8 S100A11P1-201ENST00000477525 312 ntBASIC3.18□□□□□ -1.9
SIX2Q9NPC8 TMED11P-201ENST00000479478 690 ntBASIC3.18□□□□□ -1.9
SIX2Q9NPC8 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC3.18□□□□□ -1.9
SIX2Q9NPC8 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC3.18□□□□□ -1.9
SIX2Q9NPC8 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC3.18□□□□□ -1.9
SIX2Q9NPC8 MTND1P5-201ENST00000517906 940 ntBASIC3.18□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 83.6 ms