Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 AL670379.12-201ENST00000605291 253 ntBASIC4.29□□□□□ -1.72
NUP88Q99567 AL670379.8-201ENST00000605353 252 ntBASIC4.29□□□□□ -1.72
NUP88Q99567 AL670379.7-201ENST00000605823 252 ntBASIC4.29□□□□□ -1.72
NUP88Q99567 AC092954.2-201ENST00000609103 430 ntBASIC4.29□□□□□ -1.72
NUP88Q99567 AC004825.2-201ENST00000616634 455 ntBASIC4.29□□□□□ -1.72
NUP88Q99567 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC4.29□□□□□ -1.72
NUP88Q99567 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
NUP88Q99567 AL713922.2-201ENST00000619384 716 ntBASIC4.29□□□□□ -1.72
NUP88Q99567 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
NUP88Q99567 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.29□□□□□ -1.72
NUP88Q99567 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
NUP88Q99567 CD36-221ENST00000534394 1741 ntTSL 2 BASIC4.29□□□□□ -1.72
NUP88Q99567 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC4.29□□□□□ -1.72
NUP88Q99567 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
NUP88Q99567 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
NUP88Q99567 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
NUP88Q99567 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC4.28□□□□□ -1.72
NUP88Q99567 MTCO1P12-201ENST00000414273 1543 ntBASIC4.28□□□□□ -1.72
NUP88Q99567 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC4.28□□□□□ -1.72
NUP88Q99567 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
NUP88Q99567 AC073343.1-201ENST00000328239 651 ntBASIC4.28□□□□□ -1.72
NUP88Q99567 RNU1-18P-201ENST00000363062 164 ntBASIC4.28□□□□□ -1.72
NUP88Q99567 SNORD115-47-201ENST00000391226 86 ntBASIC4.28□□□□□ -1.72
NUP88Q99567 NDUFS5P1-201ENST00000405668 289 ntBASIC4.28□□□□□ -1.72
NUP88Q99567 RNA5SP129-201ENST00000410276 118 ntBASIC4.28□□□□□ -1.72
NUP88Q99567 RNU2-39P-201ENST00000410604 198 ntBASIC4.28□□□□□ -1.72
NUP88Q99567 DBIP2-201ENST00000419076 262 ntBASIC4.28□□□□□ -1.72
NUP88Q99567 ELOCP14-201ENST00000428070 331 ntBASIC4.28□□□□□ -1.72
NUP88Q99567 AC093106.2-201ENST00000428212 385 ntBASIC4.28□□□□□ -1.72
NUP88Q99567 MED13P1-201ENST00000428342 171 ntBASIC4.28□□□□□ -1.72
NUP88Q99567 RPS20P5-201ENST00000434808 360 ntBASIC4.28□□□□□ -1.72
NUP88Q99567 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC4.28□□□□□ -1.72
NUP88Q99567 UBE2V1P8-201ENST00000437166 265 ntBASIC4.28□□□□□ -1.72
NUP88Q99567 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
NUP88Q99567 ELOCP7-201ENST00000439968 331 ntBASIC4.28□□□□□ -1.72
NUP88Q99567 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC4.28□□□□□ -1.72
NUP88Q99567 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC4.28□□□□□ -1.72
NUP88Q99567 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC4.28□□□□□ -1.72
NUP88Q99567 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC4.28□□□□□ -1.72
NUP88Q99567 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC4.28□□□□□ -1.72
NUP88Q99567 AC013267.1-201ENST00000458227 267 ntBASIC4.28□□□□□ -1.72
NUP88Q99567 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC4.28□□□□□ -1.72
NUP88Q99567 AC023598.1-201ENST00000472521 361 ntBASIC4.28□□□□□ -1.72
NUP88Q99567 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC4.28□□□□□ -1.72
NUP88Q99567 AC106872.2-201ENST00000494303 480 ntBASIC4.28□□□□□ -1.72
NUP88Q99567 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
NUP88Q99567 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC4.28□□□□□ -1.72
NUP88Q99567 AL359273.1-201ENST00000510918 627 ntBASIC4.28□□□□□ -1.72
NUP88Q99567 FTH1P9-201ENST00000513251 355 ntBASIC4.28□□□□□ -1.72
NUP88Q99567 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC4.28□□□□□ -1.72
NUP88Q99567 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC4.28□□□□□ -1.72
NUP88Q99567 AC007458.1-201ENST00000542812 373 ntBASIC4.28□□□□□ -1.72
NUP88Q99567 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC4.28□□□□□ -1.72
NUP88Q99567 AL512360.1-201ENST00000555346 234 ntBASIC4.28□□□□□ -1.72
NUP88Q99567 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC4.28□□□□□ -1.72
NUP88Q99567 AC005951.2-201ENST00000576282 495 ntBASIC4.28□□□□□ -1.72
NUP88Q99567 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC4.28□□□□□ -1.72
NUP88Q99567 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC4.28□□□□□ -1.72
NUP88Q99567 BRDTP1-201ENST00000605735 677 ntBASIC4.28□□□□□ -1.72
NUP88Q99567 AP002360.4-201ENST00000606980 481 ntBASIC4.28□□□□□ -1.72
NUP88Q99567 AC006023.2-201ENST00000609916 167 ntBASIC4.28□□□□□ -1.72
NUP88Q99567 AC084757.4-201ENST00000616350 526 ntBASIC4.28□□□□□ -1.72
NUP88Q99567 TEX41-265ENST00000627785 704 ntTSL 5 BASIC4.28□□□□□ -1.72
NUP88Q99567 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC4.28□□□□□ -1.72
NUP88Q99567 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC4.28□□□□□ -1.72
NUP88Q99567 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
NUP88Q99567 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
NUP88Q99567 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
NUP88Q99567 EXOC5P1-201ENST00000510543 1969 ntBASIC4.27□□□□□ -1.73
NUP88Q99567 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC4.27□□□□□ -1.73
NUP88Q99567 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
NUP88Q99567 AC007685.1-201ENST00000329806 452 ntBASIC4.27□□□□□ -1.73
NUP88Q99567 Y_RNA.9-201ENST00000362354 101 ntBASIC4.27□□□□□ -1.73
NUP88Q99567 RNU6-1120P-201ENST00000362988 108 ntBASIC4.27□□□□□ -1.73
NUP88Q99567 RNU6-188P-201ENST00000364207 107 ntBASIC4.27□□□□□ -1.73
NUP88Q99567 RNU5E-6P-201ENST00000365574 115 ntBASIC4.27□□□□□ -1.73
NUP88Q99567 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC4.27□□□□□ -1.73
NUP88Q99567 RNU6-701P-201ENST00000384059 107 ntBASIC4.27□□□□□ -1.73
NUP88Q99567 HLFP1-201ENST00000402375 499 ntBASIC4.27□□□□□ -1.73
NUP88Q99567 AC245054.1-201ENST00000420944 258 ntBASIC4.27□□□□□ -1.73
NUP88Q99567 AC018630.2-202ENST00000422992 927 ntBASIC4.27□□□□□ -1.73
NUP88Q99567 AL139415.2-201ENST00000431968 163 ntBASIC4.27□□□□□ -1.73
NUP88Q99567 RPL23AP20-201ENST00000447965 421 ntBASIC4.27□□□□□ -1.73
NUP88Q99567 AC027673.1-201ENST00000456245 405 ntBASIC4.27□□□□□ -1.73
NUP88Q99567 AC117522.1-201ENST00000509821 380 ntBASIC4.27□□□□□ -1.73
NUP88Q99567 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC4.27□□□□□ -1.73
NUP88Q99567 RNU6-1092P-201ENST00000516955 87 ntBASIC4.27□□□□□ -1.73
NUP88Q99567 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
NUP88Q99567 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
NUP88Q99567 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC4.27□□□□□ -1.73
NUP88Q99567 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC4.27□□□□□ -1.73
NUP88Q99567 AL606834.2-201ENST00000602954 668 ntBASIC4.27□□□□□ -1.73
NUP88Q99567 AC010591.1-201ENST00000603941 649 ntBASIC4.27□□□□□ -1.73
NUP88Q99567 AL121992.2-201ENST00000606262 256 ntBASIC4.27□□□□□ -1.73
NUP88Q99567 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC4.27□□□□□ -1.73
NUP88Q99567 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC4.27□□□□□ -1.73
NUP88Q99567 OR4G2P-202ENST00000641004 1759 ntBASIC4.27□□□□□ -1.73
NUP88Q99567 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC4.27□□□□□ -1.73
NUP88Q99567 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
NUP88Q99567 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC4.27□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 148 ms