Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC2.77□□□□□ -1.97
VPS35Q96QK1 ELOCP29-201ENST00000588193 334 ntBASIC2.77□□□□□ -1.97
VPS35Q96QK1 MIR7515HG-243ENST00000591400 1067 ntTSL 5 BASIC2.77□□□□□ -1.97
VPS35Q96QK1 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC2.77□□□□□ -1.97
VPS35Q96QK1 AC245884.10-201ENST00000597355 337 ntBASIC2.77□□□□□ -1.97
VPS35Q96QK1 AL391001.1-201ENST00000602747 715 ntBASIC2.77□□□□□ -1.97
VPS35Q96QK1 LINC02109-204ENST00000602801 563 ntTSL 4 BASIC2.77□□□□□ -1.97
VPS35Q96QK1 AL357094.1-201ENST00000603845 844 ntBASIC2.77□□□□□ -1.97
VPS35Q96QK1 PCMTD1P7-201ENST00000634506 357 ntBASIC2.77□□□□□ -1.97
VPS35Q96QK1 SNORA80A-201ENST00000363922 136 ntBASIC2.76□□□□□ -1.97
VPS35Q96QK1 RNU6-7-201ENST00000364784 107 ntBASIC2.76□□□□□ -1.97
VPS35Q96QK1 RNU6-8-201ENST00000365467 107 ntBASIC2.76□□□□□ -1.97
VPS35Q96QK1 KLRC2-202ENST00000381902 1221 ntAPPRIS P2 TSL 1 (best) BASIC2.76□□□□□ -1.97
VPS35Q96QK1 RNU6-83P-201ENST00000384568 112 ntBASIC2.76□□□□□ -1.97
VPS35Q96QK1 CXADR-203ENST00000400165 603 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
VPS35Q96QK1 RN7SKP266-201ENST00000410232 287 ntBASIC2.76□□□□□ -1.97
VPS35Q96QK1 PIGPP2-201ENST00000411569 458 ntBASIC2.76□□□□□ -1.97
VPS35Q96QK1 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC2.76□□□□□ -1.97
VPS35Q96QK1 HMGN2P30-201ENST00000423237 256 ntBASIC2.76□□□□□ -1.97
VPS35Q96QK1 RPL35AP22-201ENST00000436855 335 ntBASIC2.76□□□□□ -1.97
VPS35Q96QK1 ARPC3P1-201ENST00000437218 533 ntBASIC2.76□□□□□ -1.97
VPS35Q96QK1 AC105272.1-201ENST00000438604 198 ntBASIC2.76□□□□□ -1.97
VPS35Q96QK1 Z82210.1-201ENST00000440037 231 ntBASIC2.76□□□□□ -1.97
VPS35Q96QK1 BNIP3P2-201ENST00000441221 577 ntBASIC2.76□□□□□ -1.97
VPS35Q96QK1 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
VPS35Q96QK1 TPT1P14-201ENST00000448018 505 ntBASIC2.76□□□□□ -1.97
VPS35Q96QK1 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC2.76□□□□□ -1.97
VPS35Q96QK1 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC2.76□□□□□ -1.97
VPS35Q96QK1 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC2.76□□□□□ -1.97
VPS35Q96QK1 AC092798.1-201ENST00000458542 409 ntBASIC2.76□□□□□ -1.97
VPS35Q96QK1 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC2.76□□□□□ -1.97
VPS35Q96QK1 AC135721.1-201ENST00000497954 479 ntBASIC2.76□□□□□ -1.97
VPS35Q96QK1 LINC02201-201ENST00000508992 468 ntTSL 2 BASIC2.76□□□□□ -1.97
VPS35Q96QK1 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC2.76□□□□□ -1.97
VPS35Q96QK1 NRON-201ENST00000517270 370 ntBASIC2.76□□□□□ -1.97
VPS35Q96QK1 AC105185.1-201ENST00000518705 535 ntBASIC2.76□□□□□ -1.97
VPS35Q96QK1 AC025881.1-201ENST00000518851 512 ntBASIC2.76□□□□□ -1.97
VPS35Q96QK1 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
VPS35Q96QK1 TRAV28-201ENST00000557548 323 ntBASIC2.76□□□□□ -1.97
VPS35Q96QK1 AC066613.1-202ENST00000560727 630 ntTSL 5 BASIC2.76□□□□□ -1.97
VPS35Q96QK1 AC090888.1-201ENST00000561335 1141 ntBASIC2.76□□□□□ -1.97
VPS35Q96QK1 CASC16-202ENST00000563844 610 ntTSL 3 BASIC2.76□□□□□ -1.97
VPS35Q96QK1 AC060771.1-201ENST00000582031 164 ntBASIC2.76□□□□□ -1.97
VPS35Q96QK1 TPMTP1-201ENST00000592307 737 ntBASIC2.76□□□□□ -1.97
VPS35Q96QK1 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC2.76□□□□□ -1.97
VPS35Q96QK1 RNU6-88P-201ENST00000606801 100 ntBASIC2.76□□□□□ -1.97
VPS35Q96QK1 TUG1_2.1-201ENST00000614234 87 ntBASIC2.76□□□□□ -1.97
VPS35Q96QK1 AC022960.3-201ENST00000619794 441 ntBASIC2.76□□□□□ -1.97
VPS35Q96QK1 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC2.76□□□□□ -1.97
VPS35Q96QK1 AC006927.4-201ENST00000639187 543 ntBASIC2.76□□□□□ -1.97
VPS35Q96QK1 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
VPS35Q96QK1 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
VPS35Q96QK1 SNORD56.5-201ENST00000364281 72 ntBASIC2.75□□□□□ -1.97
VPS35Q96QK1 STATH-202ENST00000381060 534 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
VPS35Q96QK1 RNU6-584P-201ENST00000410350 95 ntBASIC2.75□□□□□ -1.97
VPS35Q96QK1 SSR1P2-201ENST00000415208 787 ntBASIC2.75□□□□□ -1.97
VPS35Q96QK1 AC099548.1-201ENST00000421443 426 ntBASIC2.75□□□□□ -1.97
VPS35Q96QK1 MTND4LP3-201ENST00000468320 276 ntBASIC2.75□□□□□ -1.97
VPS35Q96QK1 AC003982.1-202ENST00000469928 248 ntBASIC2.75□□□□□ -1.97
VPS35Q96QK1 RPL9P33-201ENST00000484311 566 ntBASIC2.75□□□□□ -1.97
VPS35Q96QK1 GTF2IP9-201ENST00000502460 301 ntBASIC2.75□□□□□ -1.97
VPS35Q96QK1 AIG1P1-201ENST00000503376 148 ntBASIC2.75□□□□□ -1.97
VPS35Q96QK1 THAP6-205ENST00000504190 1004 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
VPS35Q96QK1 AC093297.2-205ENST00000508123 572 ntTSL 3 BASIC2.75□□□□□ -1.97
VPS35Q96QK1 AC091826.1-201ENST00000514065 313 ntBASIC2.75□□□□□ -1.97
VPS35Q96QK1 MTND5P4-201ENST00000514978 288 ntBASIC2.75□□□□□ -1.97
VPS35Q96QK1 SNORA9.3-201ENST00000516383 129 ntBASIC2.75□□□□□ -1.97
VPS35Q96QK1 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC2.75□□□□□ -1.97
VPS35Q96QK1 UBTFL10-201ENST00000528532 562 ntBASIC2.75□□□□□ -1.97
VPS35Q96QK1 AC023538.1-201ENST00000534576 736 ntBASIC2.75□□□□□ -1.97
VPS35Q96QK1 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC2.75□□□□□ -1.97
VPS35Q96QK1 DUXAP1-201ENST00000556632 463 ntBASIC2.75□□□□□ -1.97
VPS35Q96QK1 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC2.75□□□□□ -1.97
VPS35Q96QK1 LINC01584-203ENST00000567231 646 ntTSL 5 BASIC2.75□□□□□ -1.97
VPS35Q96QK1 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC2.75□□□□□ -1.97
VPS35Q96QK1 MIR3605-201ENST00000583214 100 ntBASIC2.75□□□□□ -1.97
VPS35Q96QK1 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC2.75□□□□□ -1.97
VPS35Q96QK1 ZNF861P-201ENST00000588126 639 ntBASIC2.75□□□□□ -1.97
VPS35Q96QK1 AC011458.1-201ENST00000604034 617 ntBASIC2.75□□□□□ -1.97
VPS35Q96QK1 AL033523.1-201ENST00000605153 153 ntBASIC2.75□□□□□ -1.97
VPS35Q96QK1 AL136363.1-201ENST00000605349 337 ntBASIC2.75□□□□□ -1.97
VPS35Q96QK1 AC024933.1-201ENST00000608472 348 ntBASIC2.75□□□□□ -1.97
VPS35Q96QK1 UBE2Q2P6-201ENST00000612666 153 ntBASIC2.75□□□□□ -1.97
VPS35Q96QK1 AC010133.1-201ENST00000615809 842 ntBASIC2.75□□□□□ -1.97
VPS35Q96QK1 DLEU1_2.1-201ENST00000617920 342 ntBASIC2.75□□□□□ -1.97
VPS35Q96QK1 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC2.75□□□□□ -1.97
VPS35Q96QK1 AC002064.3-201ENST00000623448 346 ntBASIC2.75□□□□□ -1.97
VPS35Q96QK1 AL078595.3-201ENST00000623815 1166 ntBASIC2.75□□□□□ -1.97
VPS35Q96QK1 AC006386.2-201ENST00000624491 75 ntBASIC2.75□□□□□ -1.97
VPS35Q96QK1 AC012005.1-201ENST00000624575 75 ntBASIC2.75□□□□□ -1.97
VPS35Q96QK1 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC2.75□□□□□ -1.97
VPS35Q96QK1 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC2.75□□□□□ -1.97
VPS35Q96QK1 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
VPS35Q96QK1 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
VPS35Q96QK1 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.74□□□□□ -1.97
VPS35Q96QK1 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
VPS35Q96QK1 GNGT1-201ENST00000248572 720 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
VPS35Q96QK1 OR5J1P-201ENST00000313544 939 ntBASIC2.74□□□□□ -1.97
VPS35Q96QK1 RPL9P7-201ENST00000330965 580 ntBASIC2.74□□□□□ -1.97
VPS35Q96QK1 RNU6-157P-201ENST00000383957 107 ntBASIC2.74□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 100.8 ms