Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 AC013470.2-206ENST00000636804 771 ntAPPRIS P5 TSL 5 BASIC2.39□□□□□ -2.03
CCDC54Q8NEL0 AC093536.2-201ENST00000565257 1406 ntBASIC2.39□□□□□ -2.03
CCDC54Q8NEL0 ANKRD26P2-201ENST00000445530 1710 ntBASIC2.39□□□□□ -2.03
CCDC54Q8NEL0 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
CCDC54Q8NEL0 AC135776.4-201ENST00000624300 1904 ntBASIC2.38□□□□□ -2.03
CCDC54Q8NEL0 RNU6-462P-201ENST00000362659 105 ntBASIC2.38□□□□□ -2.03
CCDC54Q8NEL0 RNU6-97P-201ENST00000363387 104 ntBASIC2.38□□□□□ -2.03
CCDC54Q8NEL0 RNU6-723P-201ENST00000383973 107 ntBASIC2.38□□□□□ -2.03
CCDC54Q8NEL0 RNU6-1200P-201ENST00000384162 107 ntBASIC2.38□□□□□ -2.03
CCDC54Q8NEL0 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC2.38□□□□□ -2.03
CCDC54Q8NEL0 AF130351.1-202ENST00000400562 808 ntAPPRIS P5 TSL 3 BASIC2.38□□□□□ -2.03
CCDC54Q8NEL0 AC018630.2-202ENST00000422992 927 ntBASIC2.38□□□□□ -2.03
CCDC54Q8NEL0 NDUFB4P7-201ENST00000423198 363 ntBASIC2.38□□□□□ -2.03
CCDC54Q8NEL0 MTND1P20-201ENST00000430341 950 ntBASIC2.38□□□□□ -2.03
CCDC54Q8NEL0 AC092427.1-202ENST00000430569 476 ntBASIC2.38□□□□□ -2.03
CCDC54Q8NEL0 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC2.38□□□□□ -2.03
CCDC54Q8NEL0 AC129850.1-201ENST00000436203 508 ntBASIC2.38□□□□□ -2.03
CCDC54Q8NEL0 MTATP6P30-201ENST00000443540 664 ntBASIC2.38□□□□□ -2.03
CCDC54Q8NEL0 AC073174.1-201ENST00000444155 415 ntTSL 5 BASIC2.38□□□□□ -2.03
CCDC54Q8NEL0 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC2.38□□□□□ -2.03
CCDC54Q8NEL0 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC2.38□□□□□ -2.03
CCDC54Q8NEL0 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC2.38□□□□□ -2.03
CCDC54Q8NEL0 AC073901.1-201ENST00000462471 408 ntBASIC2.38□□□□□ -2.03
CCDC54Q8NEL0 AC090525.1-201ENST00000479116 478 ntBASIC2.38□□□□□ -2.03
CCDC54Q8NEL0 AC106821.1-201ENST00000502861 572 ntTSL 5 BASIC2.38□□□□□ -2.03
CCDC54Q8NEL0 AC006445.2-201ENST00000510061 472 ntBASIC2.38□□□□□ -2.03
CCDC54Q8NEL0 MEF2C-AS1-208ENST00000512585 741 ntTSL 5 BASIC2.38□□□□□ -2.03
CCDC54Q8NEL0 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC2.38□□□□□ -2.03
CCDC54Q8NEL0 RN7SKP265-201ENST00000516448 223 ntBASIC2.38□□□□□ -2.03
CCDC54Q8NEL0 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC2.38□□□□□ -2.03
CCDC54Q8NEL0 OR4R1P-201ENST00000529879 463 ntBASIC2.38□□□□□ -2.03
CCDC54Q8NEL0 AP000756.1-201ENST00000532606 679 ntTSL 2 BASIC2.38□□□□□ -2.03
CCDC54Q8NEL0 AL133271.1-201ENST00000538229 291 ntBASIC2.38□□□□□ -2.03
CCDC54Q8NEL0 MGST1-215ENST00000540056 546 ntTSL 3 BASIC2.38□□□□□ -2.03
CCDC54Q8NEL0 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC2.38□□□□□ -2.03
CCDC54Q8NEL0 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC2.38□□□□□ -2.03
CCDC54Q8NEL0 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC2.38□□□□□ -2.03
CCDC54Q8NEL0 MIR544B-201ENST00000582372 78 ntBASIC2.38□□□□□ -2.03
CCDC54Q8NEL0 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC2.38□□□□□ -2.03
CCDC54Q8NEL0 AC060766.3-201ENST00000591442 263 ntBASIC2.38□□□□□ -2.03
CCDC54Q8NEL0 AC012493.2-201ENST00000595083 291 ntBASIC2.38□□□□□ -2.03
CCDC54Q8NEL0 VN1R82P-201ENST00000601481 356 ntBASIC2.38□□□□□ -2.03
CCDC54Q8NEL0 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC2.38□□□□□ -2.03
CCDC54Q8NEL0 AC021171.1-201ENST00000603137 706 ntBASIC2.38□□□□□ -2.03
CCDC54Q8NEL0 AC011451.2-201ENST00000604303 598 ntBASIC2.38□□□□□ -2.03
CCDC54Q8NEL0 AC018714.1-201ENST00000605028 208 ntBASIC2.38□□□□□ -2.03
CCDC54Q8NEL0 AL607023.1-201ENST00000620045 248 ntBASIC2.38□□□□□ -2.03
CCDC54Q8NEL0 OR8B1P-202ENST00000641132 1178 ntBASIC2.38□□□□□ -2.03
CCDC54Q8NEL0 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC2.38□□□□□ -2.03
CCDC54Q8NEL0 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
CCDC54Q8NEL0 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.38□□□□□ -2.03
CCDC54Q8NEL0 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.38□□□□□ -2.03
CCDC54Q8NEL0 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
CCDC54Q8NEL0 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC2.37□□□□□ -2.03
CCDC54Q8NEL0 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.37□□□□□ -2.03
CCDC54Q8NEL0 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC2.37□□□□□ -2.03
CCDC54Q8NEL0 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
CCDC54Q8NEL0 RPL21P132-201ENST00000331267 462 ntBASIC2.37□□□□□ -2.03
CCDC54Q8NEL0 SNORA71.3-201ENST00000362582 128 ntBASIC2.37□□□□□ -2.03
CCDC54Q8NEL0 RNA5SP374-201ENST00000362939 125 ntBASIC2.37□□□□□ -2.03
CCDC54Q8NEL0 RNU6-1214P-201ENST00000363650 109 ntBASIC2.37□□□□□ -2.03
CCDC54Q8NEL0 RNU6-1078P-201ENST00000364522 103 ntBASIC2.37□□□□□ -2.03
CCDC54Q8NEL0 RNU6-769P-201ENST00000384407 104 ntBASIC2.37□□□□□ -2.03
CCDC54Q8NEL0 MIR325-201ENST00000385260 98 ntBASIC2.37□□□□□ -2.03
CCDC54Q8NEL0 RNU6-1197P-201ENST00000391183 107 ntBASIC2.37□□□□□ -2.03
CCDC54Q8NEL0 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
CCDC54Q8NEL0 RPS4XP7-201ENST00000406274 780 ntBASIC2.37□□□□□ -2.03
CCDC54Q8NEL0 RNU6ATAC10P-201ENST00000408635 111 ntBASIC2.37□□□□□ -2.03
CCDC54Q8NEL0 RN7SKP266-201ENST00000410232 287 ntBASIC2.37□□□□□ -2.03
CCDC54Q8NEL0 RPS24P7-201ENST00000416921 246 ntBASIC2.37□□□□□ -2.03
CCDC54Q8NEL0 LINC01040-201ENST00000425048 666 ntTSL 2 BASIC2.37□□□□□ -2.03
CCDC54Q8NEL0 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC2.37□□□□□ -2.03
CCDC54Q8NEL0 AL161935.3-201ENST00000433770 347 ntTSL 2 BASIC2.37□□□□□ -2.03
CCDC54Q8NEL0 TAAR7P-201ENST00000436141 242 ntBASIC2.37□□□□□ -2.03
CCDC54Q8NEL0 AC003001.1-201ENST00000443247 1135 ntTSL 5 BASIC2.37□□□□□ -2.03
CCDC54Q8NEL0 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC2.37□□□□□ -2.03
CCDC54Q8NEL0 TPT1P14-201ENST00000448018 505 ntBASIC2.37□□□□□ -2.03
CCDC54Q8NEL0 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC2.37□□□□□ -2.03
CCDC54Q8NEL0 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC2.37□□□□□ -2.03
CCDC54Q8NEL0 ATG12P2-201ENST00000456830 416 ntBASIC2.37□□□□□ -2.03
CCDC54Q8NEL0 AL049714.1-201ENST00000466686 347 ntBASIC2.37□□□□□ -2.03
CCDC54Q8NEL0 C1orf185-202ENST00000467127 747 ntAPPRIS ALT2 TSL 3 BASIC2.37□□□□□ -2.03
CCDC54Q8NEL0 RPL23AP70-201ENST00000483361 460 ntBASIC2.37□□□□□ -2.03
CCDC54Q8NEL0 AC135721.1-201ENST00000497954 479 ntBASIC2.37□□□□□ -2.03
CCDC54Q8NEL0 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC2.37□□□□□ -2.03
CCDC54Q8NEL0 AC093809.1-201ENST00000509155 340 ntBASIC2.37□□□□□ -2.03
CCDC54Q8NEL0 TBCAP3-201ENST00000512475 312 ntBASIC2.37□□□□□ -2.03
CCDC54Q8NEL0 AC112673.1-201ENST00000513168 575 ntBASIC2.37□□□□□ -2.03
CCDC54Q8NEL0 AC103783.1-201ENST00000520506 373 ntBASIC2.37□□□□□ -2.03
CCDC54Q8NEL0 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC2.37□□□□□ -2.03
CCDC54Q8NEL0 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC2.37□□□□□ -2.03
CCDC54Q8NEL0 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC2.37□□□□□ -2.03
CCDC54Q8NEL0 MRPL42-208ENST00000552217 920 ntAPPRIS P2 TSL 2 BASIC2.37□□□□□ -2.03
CCDC54Q8NEL0 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC2.37□□□□□ -2.03
CCDC54Q8NEL0 AC099811.4-201ENST00000592536 496 ntTSL 2 BASIC2.37□□□□□ -2.03
CCDC54Q8NEL0 AC025588.2-201ENST00000604851 466 ntBASIC2.37□□□□□ -2.03
CCDC54Q8NEL0 HNRNPDLP4-201ENST00000605144 301 ntBASIC2.37□□□□□ -2.03
CCDC54Q8NEL0 BX664608.1-201ENST00000610519 487 ntBASIC2.37□□□□□ -2.03
CCDC54Q8NEL0 AC068880.5-201ENST00000624331 290 ntBASIC2.37□□□□□ -2.03
CCDC54Q8NEL0 AC099063.3-201ENST00000642066 185 ntBASIC2.37□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 80.1 ms