Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC5.07□□□□□ -1.6
USHBP1Q8N6Y0 MIR4775-201ENST00000581168 75 ntBASIC5.07□□□□□ -1.6
USHBP1Q8N6Y0 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC5.07□□□□□ -1.6
USHBP1Q8N6Y0 DPPA3P3-201ENST00000603842 430 ntBASIC5.07□□□□□ -1.6
USHBP1Q8N6Y0 Z98949.1-212ENST00000609820 837 ntTSL 5 BASIC5.07□□□□□ -1.6
USHBP1Q8N6Y0 AC103710.2-201ENST00000609912 942 ntBASIC5.07□□□□□ -1.6
USHBP1Q8N6Y0 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC5.07□□□□□ -1.6
USHBP1Q8N6Y0 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
USHBP1Q8N6Y0 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC5.07□□□□□ -1.6
USHBP1Q8N6Y0 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
USHBP1Q8N6Y0 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
USHBP1Q8N6Y0 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC5.07□□□□□ -1.6
USHBP1Q8N6Y0 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC5.07□□□□□ -1.6
USHBP1Q8N6Y0 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
USHBP1Q8N6Y0 ELL2P4-201ENST00000446870 1376 ntBASIC5.06□□□□□ -1.6
USHBP1Q8N6Y0 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC5.06□□□□□ -1.6
USHBP1Q8N6Y0 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
USHBP1Q8N6Y0 PHKBP1-201ENST00000450951 1951 ntBASIC5.06□□□□□ -1.6
USHBP1Q8N6Y0 GPR34-202ENST00000378142 1928 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
USHBP1Q8N6Y0 RNA5SP391-201ENST00000363456 119 ntBASIC5.06□□□□□ -1.6
USHBP1Q8N6Y0 Y_RNA.445-201ENST00000384168 102 ntBASIC5.06□□□□□ -1.6
USHBP1Q8N6Y0 SNORD116-29-201ENST00000384516 83 ntBASIC5.06□□□□□ -1.6
USHBP1Q8N6Y0 Y_RNA.530-201ENST00000384587 101 ntBASIC5.06□□□□□ -1.6
USHBP1Q8N6Y0 RNVU1-14-201ENST00000384770 164 ntBASIC5.06□□□□□ -1.6
USHBP1Q8N6Y0 RNU6-278P-201ENST00000390945 109 ntBASIC5.06□□□□□ -1.6
USHBP1Q8N6Y0 HMGN1P24-201ENST00000412282 298 ntBASIC5.06□□□□□ -1.6
USHBP1Q8N6Y0 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC5.06□□□□□ -1.6
USHBP1Q8N6Y0 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC5.06□□□□□ -1.6
USHBP1Q8N6Y0 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC5.06□□□□□ -1.6
USHBP1Q8N6Y0 MTATP6P16-201ENST00000434543 526 ntBASIC5.06□□□□□ -1.6
USHBP1Q8N6Y0 HMGB1P37-201ENST00000439613 609 ntBASIC5.06□□□□□ -1.6
USHBP1Q8N6Y0 RPS17P13-201ENST00000448974 407 ntBASIC5.06□□□□□ -1.6
USHBP1Q8N6Y0 AL591623.2-201ENST00000449978 222 ntBASIC5.06□□□□□ -1.6
USHBP1Q8N6Y0 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC5.06□□□□□ -1.6
USHBP1Q8N6Y0 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC5.06□□□□□ -1.6
USHBP1Q8N6Y0 RPS4XP10-201ENST00000465034 731 ntBASIC5.06□□□□□ -1.6
USHBP1Q8N6Y0 RN7SL585P-201ENST00000470538 280 ntBASIC5.06□□□□□ -1.6
USHBP1Q8N6Y0 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC5.06□□□□□ -1.6
USHBP1Q8N6Y0 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC5.06□□□□□ -1.6
USHBP1Q8N6Y0 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC5.06□□□□□ -1.6
USHBP1Q8N6Y0 AP005435.4-201ENST00000529514 284 ntBASIC5.06□□□□□ -1.6
USHBP1Q8N6Y0 AC103843.2-201ENST00000530523 682 ntBASIC5.06□□□□□ -1.6
USHBP1Q8N6Y0 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC5.06□□□□□ -1.6
USHBP1Q8N6Y0 OR5B10P-201ENST00000532869 642 ntBASIC5.06□□□□□ -1.6
USHBP1Q8N6Y0 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC5.06□□□□□ -1.6
USHBP1Q8N6Y0 AC128657.1-201ENST00000549459 145 ntBASIC5.06□□□□□ -1.6
USHBP1Q8N6Y0 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC5.06□□□□□ -1.6
USHBP1Q8N6Y0 MIR5187-201ENST00000583479 76 ntBASIC5.06□□□□□ -1.6
USHBP1Q8N6Y0 AL022099.1-201ENST00000604551 712 ntBASIC5.06□□□□□ -1.6
USHBP1Q8N6Y0 AC016925.2-201ENST00000605108 242 ntBASIC5.06□□□□□ -1.6
USHBP1Q8N6Y0 RNU1-30P-201ENST00000606575 163 ntBASIC5.06□□□□□ -1.6
USHBP1Q8N6Y0 U3.45-201ENST00000607547 219 ntBASIC5.06□□□□□ -1.6
USHBP1Q8N6Y0 AL078596.1-201ENST00000624856 447 ntBASIC5.06□□□□□ -1.6
USHBP1Q8N6Y0 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC5.06□□□□□ -1.6
USHBP1Q8N6Y0 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
USHBP1Q8N6Y0 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC5.06□□□□□ -1.6
USHBP1Q8N6Y0 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
USHBP1Q8N6Y0 DPP10-204ENST00000409163 3883 ntAPPRIS ALT2 TSL 2 BASIC5.05□□□□□ -1.6
USHBP1Q8N6Y0 AC009229.4-201ENST00000623854 1947 ntBASIC5.05□□□□□ -1.6
USHBP1Q8N6Y0 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
USHBP1Q8N6Y0 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC5.05□□□□□ -1.6
USHBP1Q8N6Y0 RNU6-552P-201ENST00000362869 119 ntBASIC5.05□□□□□ -1.6
USHBP1Q8N6Y0 Y_RNA.146-201ENST00000363549 102 ntBASIC5.05□□□□□ -1.6
USHBP1Q8N6Y0 RNU6-1243P-201ENST00000364028 107 ntBASIC5.05□□□□□ -1.6
USHBP1Q8N6Y0 RNU6-463P-201ENST00000384340 107 ntBASIC5.05□□□□□ -1.6
USHBP1Q8N6Y0 MIR19A-201ENST00000384878 82 ntBASIC5.05□□□□□ -1.6
USHBP1Q8N6Y0 MIR199A2-201ENST00000385289 110 ntBASIC5.05□□□□□ -1.6
USHBP1Q8N6Y0 AL590609.2-201ENST00000421430 368 ntBASIC5.05□□□□□ -1.6
USHBP1Q8N6Y0 AP000907.1-201ENST00000428428 510 ntBASIC5.05□□□□□ -1.6
USHBP1Q8N6Y0 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC5.05□□□□□ -1.6
USHBP1Q8N6Y0 RPS3AP52-201ENST00000435639 297 ntBASIC5.05□□□□□ -1.6
USHBP1Q8N6Y0 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC5.05□□□□□ -1.6
USHBP1Q8N6Y0 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
USHBP1Q8N6Y0 AC116562.3-201ENST00000506136 177 ntBASIC5.05□□□□□ -1.6
USHBP1Q8N6Y0 HMGB3P15-201ENST00000507326 574 ntBASIC5.05□□□□□ -1.6
USHBP1Q8N6Y0 AC110792.2-201ENST00000510278 224 ntBASIC5.05□□□□□ -1.6
USHBP1Q8N6Y0 RAC1P2-201ENST00000511164 579 ntBASIC5.05□□□□□ -1.6
USHBP1Q8N6Y0 RNA5SP208-201ENST00000516156 78 ntBASIC5.05□□□□□ -1.6
USHBP1Q8N6Y0 RNU2-10P-201ENST00000516375 211 ntBASIC5.05□□□□□ -1.6
USHBP1Q8N6Y0 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC5.05□□□□□ -1.6
USHBP1Q8N6Y0 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC5.05□□□□□ -1.6
USHBP1Q8N6Y0 AC068587.5-201ENST00000528506 175 ntBASIC5.05□□□□□ -1.6
USHBP1Q8N6Y0 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC5.05□□□□□ -1.6
USHBP1Q8N6Y0 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC5.05□□□□□ -1.6
USHBP1Q8N6Y0 AC006270.2-201ENST00000578523 652 ntBASIC5.05□□□□□ -1.6
USHBP1Q8N6Y0 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC5.05□□□□□ -1.6
USHBP1Q8N6Y0 CYP2C61P-201ENST00000604072 290 ntBASIC5.05□□□□□ -1.6
USHBP1Q8N6Y0 APOOP1-201ENST00000604695 592 ntBASIC5.05□□□□□ -1.6
USHBP1Q8N6Y0 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC5.05□□□□□ -1.6
USHBP1Q8N6Y0 AP001350.1-201ENST00000601906 1524 ntBASIC5.05□□□□□ -1.6
USHBP1Q8N6Y0 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC5.05□□□□□ -1.6
USHBP1Q8N6Y0 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC5.05□□□□□ -1.6
USHBP1Q8N6Y0 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC5.05□□□□□ -1.6
USHBP1Q8N6Y0 GHR-208ENST00000612382 4699 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
USHBP1Q8N6Y0 MAPK10-372ENST00000641954 3413 ntBASIC5.04□□□□□ -1.6
USHBP1Q8N6Y0 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC5.04□□□□□ -1.6
USHBP1Q8N6Y0 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
USHBP1Q8N6Y0 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
USHBP1Q8N6Y0 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
USHBP1Q8N6Y0 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 106.6 ms