Protein–RNA interactions for Protein: P46779

RPL28, 60S ribosomal protein L28, humanhuman

Known RBP Predictions only

Length 137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL28P46779 AC093677.1-201ENST00000514414 678 ntBASIC1.56□□□□□ -2.16
RPL28P46779 BTF3P12-201ENST00000519620 469 ntBASIC1.56□□□□□ -2.16
RPL28P46779 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC1.56□□□□□ -2.16
RPL28P46779 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC1.56□□□□□ -2.16
RPL28P46779 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC1.56□□□□□ -2.16
RPL28P46779 AC090519.2-201ENST00000559034 655 ntTSL 5 BASIC1.56□□□□□ -2.16
RPL28P46779 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC1.56□□□□□ -2.16
RPL28P46779 BLOC1S6-207ENST00000565216 573 ntTSL 3 BASIC1.56□□□□□ -2.16
RPL28P46779 AC122134.1-202ENST00000569111 1201 ntBASIC1.56□□□□□ -2.16
RPL28P46779 OR4K7P-201ENST00000580232 945 ntBASIC1.56□□□□□ -2.16
RPL28P46779 SNORD14A-201ENST00000606526 91 ntBASIC1.56□□□□□ -2.16
RPL28P46779 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC1.56□□□□□ -2.16
RPL28P46779 FTX_3.1-201ENST00000610451 147 ntBASIC1.56□□□□□ -2.16
RPL28P46779 AC005332.10-201ENST00000612725 619 ntBASIC1.56□□□□□ -2.16
RPL28P46779 AL118556.2-201ENST00000614375 824 ntBASIC1.56□□□□□ -2.16
RPL28P46779 AC013476.2-201ENST00000614456 459 ntBASIC1.56□□□□□ -2.16
RPL28P46779 AL590099.1-201ENST00000615276 138 ntBASIC1.56□□□□□ -2.16
RPL28P46779 AL449363.1-201ENST00000617815 186 ntBASIC1.56□□□□□ -2.16
RPL28P46779 AL603758.1-201ENST00000618654 241 ntBASIC1.56□□□□□ -2.16
RPL28P46779 AC002550.2-201ENST00000621246 394 ntBASIC1.56□□□□□ -2.16
RPL28P46779 MIR203B-201ENST00000636080 86 ntBASIC1.56□□□□□ -2.16
RPL28P46779 MTND1P37-201ENST00000636562 264 ntBASIC1.56□□□□□ -2.16
RPL28P46779 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC1.56□□□□□ -2.16
RPL28P46779 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC1.56□□□□□ -2.16
RPL28P46779 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC1.56□□□□□ -2.16
RPL28P46779 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC1.56□□□□□ -2.16
RPL28P46779 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC1.56□□□□□ -2.16
RPL28P46779 OR5T1-202ENST00000641665 1471 ntAPPRIS P1 BASIC1.56□□□□□ -2.16
RPL28P46779 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC1.55□□□□□ -2.16
RPL28P46779 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC1.55□□□□□ -2.16
RPL28P46779 OR4P4-201ENST00000314612 939 ntAPPRIS P1 BASIC1.55□□□□□ -2.16
RPL28P46779 AL589826.1-201ENST00000340697 249 ntBASIC1.55□□□□□ -2.16
RPL28P46779 RNU5B-1-201ENST00000363286 116 ntBASIC1.55□□□□□ -2.16
RPL28P46779 SNORA3A-201ENST00000364113 130 ntBASIC1.55□□□□□ -2.16
RPL28P46779 RNU6-207P-201ENST00000384137 107 ntBASIC1.55□□□□□ -2.16
RPL28P46779 MIR27B-201ENST00000385129 97 ntBASIC1.55□□□□□ -2.16
RPL28P46779 MIR34A-201ENST00000385130 110 ntBASIC1.55□□□□□ -2.16
RPL28P46779 RNU6-750P-201ENST00000390946 107 ntBASIC1.55□□□□□ -2.16
RPL28P46779 DHFRP6-201ENST00000401776 268 ntBASIC1.55□□□□□ -2.16
RPL28P46779 RNU2-49P-201ENST00000410666 184 ntBASIC1.55□□□□□ -2.16
RPL28P46779 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC1.55□□□□□ -2.16
RPL28P46779 FO393414.1-201ENST00000428697 1184 ntBASIC1.55□□□□□ -2.16
RPL28P46779 ARF4P4-201ENST00000439608 520 ntBASIC1.55□□□□□ -2.16
RPL28P46779 SDCBPP1-201ENST00000440192 890 ntBASIC1.55□□□□□ -2.16
RPL28P46779 PGBD4P3-201ENST00000440731 581 ntBASIC1.55□□□□□ -2.16
RPL28P46779 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC1.55□□□□□ -2.16
RPL28P46779 OSTCP8-201ENST00000445117 448 ntBASIC1.55□□□□□ -2.16
RPL28P46779 AL451164.2-201ENST00000445932 597 ntTSL 2 BASIC1.55□□□□□ -2.16
RPL28P46779 EEF1B2P7-201ENST00000451177 676 ntBASIC1.55□□□□□ -2.16
RPL28P46779 RPS20P22-201ENST00000473700 357 ntBASIC1.55□□□□□ -2.16
RPL28P46779 GZMAP1-201ENST00000503054 631 ntBASIC1.55□□□□□ -2.16
RPL28P46779 AC095056.1-201ENST00000503918 425 ntTSL 3 BASIC1.55□□□□□ -2.16
RPL28P46779 LINC01088-208ENST00000511895 795 ntTSL 2 BASIC1.55□□□□□ -2.16
RPL28P46779 AC022447.1-201ENST00000515358 464 ntBASIC1.55□□□□□ -2.16
RPL28P46779 RNU4ATAC17P-201ENST00000517272 120 ntBASIC1.55□□□□□ -2.16
RPL28P46779 AC022861.1-201ENST00000522981 663 ntBASIC1.55□□□□□ -2.16
RPL28P46779 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC1.55□□□□□ -2.16
RPL28P46779 AC118942.1-201ENST00000529674 1035 ntBASIC1.55□□□□□ -2.16
RPL28P46779 AC090615.1-201ENST00000577519 154 ntBASIC1.55□□□□□ -2.16
RPL28P46779 VN1R90P-201ENST00000595717 726 ntBASIC1.55□□□□□ -2.16
RPL28P46779 AC098483.2-201ENST00000603158 454 ntBASIC1.55□□□□□ -2.16
RPL28P46779 AC011451.2-201ENST00000604303 598 ntBASIC1.55□□□□□ -2.16
RPL28P46779 AC021749.1-201ENST00000604322 607 ntBASIC1.55□□□□□ -2.16
RPL28P46779 AC136601.2-201ENST00000604356 474 ntBASIC1.55□□□□□ -2.16
RPL28P46779 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC1.55□□□□□ -2.16
RPL28P46779 AL158211.4-201ENST00000606988 584 ntBASIC1.55□□□□□ -2.16
RPL28P46779 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC1.55□□□□□ -2.16
RPL28P46779 KLRC2-206ENST00000619500 883 ntTSL 5 BASIC1.55□□□□□ -2.16
RPL28P46779 AP003485.2-201ENST00000623636 610 ntBASIC1.55□□□□□ -2.16
RPL28P46779 AC093875.1-201ENST00000623688 504 ntBASIC1.55□□□□□ -2.16
RPL28P46779 AL159972.1-201ENST00000625150 448 ntBASIC1.55□□□□□ -2.16
RPL28P46779 AP000553.5-201ENST00000641933 54 ntBASIC1.55□□□□□ -2.16
RPL28P46779 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC1.55□□□□□ -2.16
RPL28P46779 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC1.55□□□□□ -2.16
RPL28P46779 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC1.55□□□□□ -2.16
RPL28P46779 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC1.55□□□□□ -2.16
RPL28P46779 MTCO1P9-201ENST00000505577 1534 ntBASIC1.55□□□□□ -2.16
RPL28P46779 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC1.55□□□□□ -2.16
RPL28P46779 AC004944.1-201ENST00000517807 3059 ntBASIC1.55□□□□□ -2.16
RPL28P46779 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC1.55□□□□□ -2.16
RPL28P46779 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC1.54□□□□□ -2.16
RPL28P46779 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC1.54□□□□□ -2.16
RPL28P46779 AL596028.1-201ENST00000326971 197 ntBASIC1.54□□□□□ -2.16
RPL28P46779 OR56A5-201ENST00000340110 738 ntBASIC1.54□□□□□ -2.16
RPL28P46779 OR5W2-201ENST00000344514 933 ntAPPRIS P1 BASIC1.54□□□□□ -2.16
RPL28P46779 RNU6-707P-201ENST00000364647 95 ntBASIC1.54□□□□□ -2.16
RPL28P46779 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC1.54□□□□□ -2.16
RPL28P46779 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC1.54□□□□□ -2.16
RPL28P46779 RNU6-468P-201ENST00000384003 109 ntBASIC1.54□□□□□ -2.16
RPL28P46779 RNU6-140P-201ENST00000384566 108 ntBASIC1.54□□□□□ -2.16
RPL28P46779 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC1.54□□□□□ -2.16
RPL28P46779 MIR888-201ENST00000401186 77 ntBASIC1.54□□□□□ -2.16
RPL28P46779 AL356057.3-201ENST00000402607 340 ntBASIC1.54□□□□□ -2.16
RPL28P46779 NDUFB4P4-201ENST00000404822 243 ntBASIC1.54□□□□□ -2.16
RPL28P46779 HMGB1P9-201ENST00000429856 646 ntBASIC1.54□□□□□ -2.16
RPL28P46779 MICF-203ENST00000432679 129 ntBASIC1.54□□□□□ -2.16
RPL28P46779 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC1.54□□□□□ -2.16
RPL28P46779 AC093155.1-201ENST00000440164 826 ntBASIC1.54□□□□□ -2.16
RPL28P46779 IPO7P1-201ENST00000442031 636 ntBASIC1.54□□□□□ -2.16
RPL28P46779 AC044781.1-201ENST00000446193 570 ntTSL 3 BASIC1.54□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 100.5 ms