Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 SNORA36C-201ENST00000384289 132 ntBASIC2.57□□□□□ -2
SHMT2P34897 Y_RNA.510-201ENST00000384511 114 ntBASIC2.57□□□□□ -2
SHMT2P34897 MIR196B-201ENST00000384852 84 ntBASIC2.57□□□□□ -2
SHMT2P34897 MIR34A-201ENST00000385130 110 ntBASIC2.57□□□□□ -2
SHMT2P34897 RNU6-1197P-201ENST00000391183 107 ntBASIC2.57□□□□□ -2
SHMT2P34897 AL356421.1-201ENST00000403255 413 ntBASIC2.57□□□□□ -2
SHMT2P34897 C1D-204ENST00000410067 736 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
SHMT2P34897 PIGPP2-201ENST00000411569 458 ntBASIC2.57□□□□□ -2
SHMT2P34897 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC2.57□□□□□ -2
SHMT2P34897 TMEM167AP1-201ENST00000423409 219 ntBASIC2.57□□□□□ -2
SHMT2P34897 AL390774.2-201ENST00000423942 788 ntTSL 3 BASIC2.57□□□□□ -2
SHMT2P34897 AL356475.1-201ENST00000440321 341 ntTSL 5 BASIC2.57□□□□□ -2
SHMT2P34897 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC2.57□□□□□ -2
SHMT2P34897 AP000936.2-201ENST00000447151 681 ntBASIC2.57□□□□□ -2
SHMT2P34897 MTCO1P27-201ENST00000448269 226 ntBASIC2.57□□□□□ -2
SHMT2P34897 GRM7-AS3-208ENST00000455623 947 ntTSL 3 BASIC2.57□□□□□ -2
SHMT2P34897 RPS29P12-201ENST00000460178 152 ntBASIC2.57□□□□□ -2
SHMT2P34897 C1orf185-202ENST00000467127 747 ntAPPRIS ALT2 TSL 3 BASIC2.57□□□□□ -2
SHMT2P34897 RN7SL432P-201ENST00000484057 298 ntBASIC2.57□□□□□ -2
SHMT2P34897 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC2.57□□□□□ -2
SHMT2P34897 AC112695.1-201ENST00000504213 592 ntTSL 2 BASIC2.57□□□□□ -2
SHMT2P34897 AC020699.1-201ENST00000505161 445 ntBASIC2.57□□□□□ -2
SHMT2P34897 AC009901.1-201ENST00000506703 541 ntBASIC2.57□□□□□ -2
SHMT2P34897 AC093281.2-201ENST00000510153 597 ntBASIC2.57□□□□□ -2
SHMT2P34897 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC2.57□□□□□ -2
SHMT2P34897 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC2.57□□□□□ -2
SHMT2P34897 AC095057.2-201ENST00000515422 553 ntTSL 4 BASIC2.57□□□□□ -2
SHMT2P34897 RNU6-311P-201ENST00000516224 102 ntBASIC2.57□□□□□ -2
SHMT2P34897 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC2.57□□□□□ -2
SHMT2P34897 MAL2-206ENST00000522187 547 ntTSL 4 BASIC2.57□□□□□ -2
SHMT2P34897 AP001372.4-201ENST00000524889 472 ntBASIC2.57□□□□□ -2
SHMT2P34897 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC2.57□□□□□ -2
SHMT2P34897 MAL2-203ENST00000534619 578 ntTSL 4 BASIC2.57□□□□□ -2
SHMT2P34897 IAPP-204ENST00000539393 409 ntAPPRIS P1 TSL 2 BASIC2.57□□□□□ -2
SHMT2P34897 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC2.57□□□□□ -2
SHMT2P34897 DUXAP1-201ENST00000556632 463 ntBASIC2.57□□□□□ -2
SHMT2P34897 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC2.57□□□□□ -2
SHMT2P34897 FAM96A-206ENST00000559950 561 ntTSL 2 BASIC2.57□□□□□ -2
SHMT2P34897 NR2F2-AS1-208ENST00000560395 441 ntTSL 5 BASIC2.57□□□□□ -2
SHMT2P34897 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC2.57□□□□□ -2
SHMT2P34897 AGGF1P5-201ENST00000567900 919 ntBASIC2.57□□□□□ -2
SHMT2P34897 VN1R82P-201ENST00000601481 356 ntBASIC2.57□□□□□ -2
SHMT2P34897 AC068313.1-201ENST00000604028 1008 ntBASIC2.57□□□□□ -2
SHMT2P34897 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC2.57□□□□□ -2
SHMT2P34897 AL050303.3-201ENST00000613704 284 ntBASIC2.57□□□□□ -2
SHMT2P34897 AL136981.2-201ENST00000617319 734 ntBASIC2.57□□□□□ -2
SHMT2P34897 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC2.57□□□□□ -2
SHMT2P34897 MAPK10-266ENST00000641066 6555 ntBASIC2.57□□□□□ -2
SHMT2P34897 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
SHMT2P34897 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.56□□□□□ -2
SHMT2P34897 RNU5A-1-201ENST00000362698 116 ntBASIC2.56□□□□□ -2
SHMT2P34897 RNA5SP139-201ENST00000364340 117 ntBASIC2.56□□□□□ -2
SHMT2P34897 RNU6-1078P-201ENST00000364522 103 ntBASIC2.56□□□□□ -2
SHMT2P34897 DEFA7P-201ENST00000382676 285 ntBASIC2.56□□□□□ -2
SHMT2P34897 CD80-202ENST00000383669 771 ntTSL 1 (best) BASIC2.56□□□□□ -2
SHMT2P34897 RNA5SP252-201ENST00000391131 119 ntBASIC2.56□□□□□ -2
SHMT2P34897 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC2.56□□□□□ -2
SHMT2P34897 MIR1290-201ENST00000408735 78 ntBASIC2.56□□□□□ -2
SHMT2P34897 RNU2-52P-201ENST00000410680 190 ntBASIC2.56□□□□□ -2
SHMT2P34897 RNU2-25P-201ENST00000411041 191 ntBASIC2.56□□□□□ -2
SHMT2P34897 GRM7-AS3-202ENST00000417482 454 ntTSL 3 BASIC2.56□□□□□ -2
SHMT2P34897 RSU1P2-202ENST00000437884 485 ntBASIC2.56□□□□□ -2
SHMT2P34897 AL117351.1-201ENST00000438864 766 ntBASIC2.56□□□□□ -2
SHMT2P34897 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC2.56□□□□□ -2
SHMT2P34897 AL606517.1-201ENST00000446914 387 ntBASIC2.56□□□□□ -2
SHMT2P34897 AL109933.2-201ENST00000452651 260 ntBASIC2.56□□□□□ -2
SHMT2P34897 RPS27P27-201ENST00000498779 255 ntBASIC2.56□□□□□ -2
SHMT2P34897 MEF2C-AS1-208ENST00000512585 741 ntTSL 5 BASIC2.56□□□□□ -2
SHMT2P34897 RNU6-415P-201ENST00000516252 97 ntBASIC2.56□□□□□ -2
SHMT2P34897 RNA5SP282-201ENST00000516355 108 ntBASIC2.56□□□□□ -2
SHMT2P34897 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC2.56□□□□□ -2
SHMT2P34897 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC2.56□□□□□ -2
SHMT2P34897 TAS2R43-201ENST00000531678 1027 ntAPPRIS P1 BASIC2.56□□□□□ -2
SHMT2P34897 AC087465.1-201ENST00000560574 245 ntBASIC2.56□□□□□ -2
SHMT2P34897 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC2.56□□□□□ -2
SHMT2P34897 UBE2L4-201ENST00000587688 464 ntBASIC2.56□□□□□ -2
SHMT2P34897 AC092296.3-201ENST00000589968 249 ntTSL 3 BASIC2.56□□□□□ -2
SHMT2P34897 PDCD6IPP1-201ENST00000615124 579 ntTSL 2 BASIC2.56□□□□□ -2
SHMT2P34897 AL603758.1-201ENST00000618654 241 ntBASIC2.56□□□□□ -2
SHMT2P34897 AL158801.5-201ENST00000623123 465 ntBASIC2.56□□□□□ -2
SHMT2P34897 AC027309.3-201ENST00000623419 351 ntBASIC2.56□□□□□ -2
SHMT2P34897 AC002064.3-201ENST00000623448 346 ntBASIC2.56□□□□□ -2
SHMT2P34897 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC2.56□□□□□ -2
SHMT2P34897 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.56□□□□□ -2
SHMT2P34897 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC2.56□□□□□ -2
SHMT2P34897 AC005832.2-201ENST00000538921 1430 ntBASIC2.56□□□□□ -2
SHMT2P34897 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC2.56□□□□□ -2
SHMT2P34897 AC233263.6-201ENST00000631132 1963 ntBASIC2.56□□□□□ -2
SHMT2P34897 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC2.56□□□□□ -2
SHMT2P34897 FAM133CP-201ENST00000332869 704 ntBASIC2.55□□□□□ -2
SHMT2P34897 RNU6-462P-201ENST00000362659 105 ntBASIC2.55□□□□□ -2
SHMT2P34897 SNORD21-201ENST00000383953 95 ntBASIC2.55□□□□□ -2
SHMT2P34897 RNU6-114P-201ENST00000384704 105 ntBASIC2.55□□□□□ -2
SHMT2P34897 MIR514A1-201ENST00000385133 98 ntBASIC2.55□□□□□ -2
SHMT2P34897 AL356057.3-201ENST00000402607 340 ntBASIC2.55□□□□□ -2
SHMT2P34897 MRPL30-202ENST00000409145 562 ntTSL 2 BASIC2.55□□□□□ -2
SHMT2P34897 TPMTP3-201ENST00000411928 735 ntBASIC2.55□□□□□ -2
SHMT2P34897 BX682237.1-201ENST00000415016 335 ntBASIC2.55□□□□□ -2
SHMT2P34897 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC2.55□□□□□ -2
SHMT2P34897 NDUFB4P7-201ENST00000423198 363 ntBASIC2.55□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 80.7 ms