Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
RFX1P22670 AC007922.3-201ENST00000581648 543 ntTSL 3 BASIC5.53□□□□□ -1.52
RFX1P22670 AC011447.4-201ENST00000587562 111 ntBASIC5.53□□□□□ -1.52
RFX1P22670 Z98949.1-211ENST00000596813 773 ntTSL 5 BASIC5.53□□□□□ -1.52
RFX1P22670 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC5.53□□□□□ -1.52
RFX1P22670 AL160281.1-201ENST00000605307 311 ntBASIC5.53□□□□□ -1.52
RFX1P22670 AL161616.1-201ENST00000611867 286 ntBASIC5.53□□□□□ -1.52
RFX1P22670 AC067931.1-201ENST00000624190 671 ntBASIC5.53□□□□□ -1.52
RFX1P22670 Z69720.2-201ENST00000624755 279 ntBASIC5.53□□□□□ -1.52
RFX1P22670 MED23-203ENST00000368058 4576 ntTSL 5 BASIC5.53□□□□□ -1.52
RFX1P22670 CTAGE5-207ENST00000396165 3071 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
RFX1P22670 SMG1P4-204ENST00000523028 4131 ntBASIC5.53□□□□□ -1.52
RFX1P22670 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
RFX1P22670 FNIP1-201ENST00000307954 6366 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
RFX1P22670 Y_RNA.47-201ENST00000362697 108 ntBASIC5.52□□□□□ -1.53
RFX1P22670 Y_RNA.149-201ENST00000363558 117 ntBASIC5.52□□□□□ -1.53
RFX1P22670 AC011933.1-201ENST00000413334 321 ntBASIC5.52□□□□□ -1.53
RFX1P22670 TOMM22P1-201ENST00000418578 312 ntBASIC5.52□□□□□ -1.53
RFX1P22670 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC5.52□□□□□ -1.53
RFX1P22670 DNAJC19P7-201ENST00000428811 344 ntBASIC5.52□□□□□ -1.53
RFX1P22670 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC5.52□□□□□ -1.53
RFX1P22670 RPL23AP50-201ENST00000434149 455 ntBASIC5.52□□□□□ -1.53
RFX1P22670 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC5.52□□□□□ -1.53
RFX1P22670 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC5.52□□□□□ -1.53
RFX1P22670 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC5.52□□□□□ -1.53
RFX1P22670 AC011816.1-201ENST00000441346 546 ntBASIC5.52□□□□□ -1.53
RFX1P22670 DAP3P1-201ENST00000441522 278 ntBASIC5.52□□□□□ -1.53
RFX1P22670 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC5.52□□□□□ -1.53
RFX1P22670 AL161630.1-201ENST00000450938 1299 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
RFX1P22670 SNORA31.8-201ENST00000516327 108 ntBASIC5.52□□□□□ -1.53
RFX1P22670 UTP23-205ENST00000520733 369 ntTSL 3 BASIC5.52□□□□□ -1.53
RFX1P22670 AC104576.1-201ENST00000524225 88 ntBASIC5.52□□□□□ -1.53
RFX1P22670 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
RFX1P22670 AC074050.1-201ENST00000563247 211 ntBASIC5.52□□□□□ -1.53
RFX1P22670 SUB1P3-201ENST00000564581 315 ntBASIC5.52□□□□□ -1.53
RFX1P22670 AC009852.2-201ENST00000567898 485 ntBASIC5.52□□□□□ -1.53
RFX1P22670 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC5.52□□□□□ -1.53
RFX1P22670 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC5.52□□□□□ -1.53
RFX1P22670 AP000787.2-201ENST00000604432 568 ntBASIC5.52□□□□□ -1.53
RFX1P22670 AP002826.1-201ENST00000608835 315 ntBASIC5.52□□□□□ -1.53
RFX1P22670 AC093799.2-201ENST00000610062 578 ntBASIC5.52□□□□□ -1.53
RFX1P22670 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC5.52□□□□□ -1.53
RFX1P22670 SNORD39.4-201ENST00000620099 78 ntBASIC5.52□□□□□ -1.53
RFX1P22670 Metazoa_SRP.93-201ENST00000622525 276 ntBASIC5.52□□□□□ -1.53
RFX1P22670 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC5.52□□□□□ -1.53
RFX1P22670 MIR7641-1-201ENST00000627518 61 ntBASIC5.52□□□□□ -1.53
RFX1P22670 PSMD5-AS1-215ENST00000640622 205 ntBASIC5.52□□□□□ -1.53
RFX1P22670 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC5.52□□□□□ -1.53
RFX1P22670 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC5.52□□□□□ -1.53
RFX1P22670 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC5.52□□□□□ -1.53
RFX1P22670 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
RFX1P22670 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC5.52□□□□□ -1.53
RFX1P22670 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC5.51□□□□□ -1.53
RFX1P22670 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC5.51□□□□□ -1.53
RFX1P22670 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC5.51□□□□□ -1.53
RFX1P22670 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
RFX1P22670 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
RFX1P22670 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
RFX1P22670 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
RFX1P22670 RAD17-220ENST00000616683 3057 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
RFX1P22670 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
RFX1P22670 MIR412-201ENST00000362142 91 ntBASIC5.51□□□□□ -1.53
RFX1P22670 SNORA2.3-201ENST00000383920 135 ntBASIC5.51□□□□□ -1.53
RFX1P22670 Y_RNA.455-201ENST00000384230 98 ntBASIC5.51□□□□□ -1.53
RFX1P22670 Y_RNA.645-201ENST00000391229 102 ntBASIC5.51□□□□□ -1.53
RFX1P22670 AL030996.1-201ENST00000411430 235 ntBASIC5.51□□□□□ -1.53
RFX1P22670 HNRNPDLP1-201ENST00000412834 550 ntBASIC5.51□□□□□ -1.53
RFX1P22670 AL158156.1-201ENST00000422509 473 ntBASIC5.51□□□□□ -1.53
RFX1P22670 AC096644.2-201ENST00000429278 159 ntBASIC5.51□□□□□ -1.53
RFX1P22670 USP9YP7-201ENST00000436723 430 ntBASIC5.51□□□□□ -1.53
RFX1P22670 AC099799.1-201ENST00000439809 192 ntBASIC5.51□□□□□ -1.53
RFX1P22670 RPL7AP61-201ENST00000443410 636 ntBASIC5.51□□□□□ -1.53
RFX1P22670 USP9YP32-201ENST00000452432 430 ntBASIC5.51□□□□□ -1.53
RFX1P22670 AC073218.1-201ENST00000458413 171 ntTSL 5 BASIC5.51□□□□□ -1.53
RFX1P22670 snoU13.4-201ENST00000458916 104 ntBASIC5.51□□□□□ -1.53
RFX1P22670 AC008571.1-201ENST00000467232 300 ntBASIC5.51□□□□□ -1.53
RFX1P22670 RPS23P3-201ENST00000470993 430 ntBASIC5.51□□□□□ -1.53
RFX1P22670 AC068781.1-201ENST00000488231 618 ntBASIC5.51□□□□□ -1.53
RFX1P22670 RNU6-475P-201ENST00000516073 104 ntBASIC5.51□□□□□ -1.53
RFX1P22670 RNU1-86P-201ENST00000516108 154 ntBASIC5.51□□□□□ -1.53
RFX1P22670 RNU1-107P-201ENST00000516617 154 ntBASIC5.51□□□□□ -1.53
RFX1P22670 RN7SKP260-201ENST00000516907 149 ntBASIC5.51□□□□□ -1.53
RFX1P22670 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC5.51□□□□□ -1.53
RFX1P22670 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC5.51□□□□□ -1.53
RFX1P22670 MIR4270-201ENST00000581799 70 ntBASIC5.51□□□□□ -1.53
RFX1P22670 AC006272.2-201ENST00000594725 163 ntBASIC5.51□□□□□ -1.53
RFX1P22670 VN1R107P-201ENST00000601784 209 ntBASIC5.51□□□□□ -1.53
RFX1P22670 AC104695.3-201ENST00000604052 296 ntBASIC5.51□□□□□ -1.53
RFX1P22670 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC5.51□□□□□ -1.53
RFX1P22670 AC100778.3-201ENST00000580060 1750 ntBASIC5.51□□□□□ -1.53
RFX1P22670 CLSPN-206ENST00000520551 4010 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
RFX1P22670 SERPINA7-202ENST00000372563 1600 ntAPPRIS P1 TSL 5 BASIC5.51□□□□□ -1.53
RFX1P22670 AL158163.1-201ENST00000603915 1649 ntBASIC5.51□□□□□ -1.53
RFX1P22670 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC5.51□□□□□ -1.53
RFX1P22670 CARF-203ENST00000414439 2099 ntTSL 2 BASIC5.51□□□□□ -1.53
RFX1P22670 OR10A3-202ENST00000642047 2650 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
RFX1P22670 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC5.5□□□□□ -1.53
RFX1P22670 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC5.5□□□□□ -1.53
RFX1P22670 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC5.5□□□□□ -1.53
RFX1P22670 AC005592.1-201ENST00000566527 1640 ntBASIC5.5□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 137.6 ms