Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
MSH3P20585 Y_RNA.619-201ENST00000410951 90 ntBASIC3.27□□□□□ -1.89
MSH3P20585 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC3.27□□□□□ -1.89
MSH3P20585 HMGN1P24-201ENST00000412282 298 ntBASIC3.27□□□□□ -1.89
MSH3P20585 C1DP2-201ENST00000418167 426 ntBASIC3.27□□□□□ -1.89
MSH3P20585 AC233728.2-201ENST00000425348 757 ntBASIC3.27□□□□□ -1.89
MSH3P20585 AC073614.1-201ENST00000438690 650 ntBASIC3.27□□□□□ -1.89
MSH3P20585 DNAJC19P4-201ENST00000440115 345 ntBASIC3.27□□□□□ -1.89
MSH3P20585 RABEPKP1-201ENST00000440529 1026 ntBASIC3.27□□□□□ -1.89
MSH3P20585 AL662791.1-201ENST00000441992 928 ntBASIC3.27□□□□□ -1.89
MSH3P20585 RPS27P29-201ENST00000463110 252 ntBASIC3.27□□□□□ -1.89
MSH3P20585 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC3.27□□□□□ -1.89
MSH3P20585 RNU6-430P-201ENST00000517078 107 ntBASIC3.27□□□□□ -1.89
MSH3P20585 MTCO2P4-201ENST00000517968 247 ntBASIC3.27□□□□□ -1.89
MSH3P20585 AP000907.2-201ENST00000530827 353 ntBASIC3.27□□□□□ -1.89
MSH3P20585 ZDHHC20P3-201ENST00000531576 336 ntBASIC3.27□□□□□ -1.89
MSH3P20585 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC3.27□□□□□ -1.89
MSH3P20585 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC3.27□□□□□ -1.89
MSH3P20585 BNIP3P33-201ENST00000598912 569 ntBASIC3.27□□□□□ -1.89
MSH3P20585 AC108747.1-201ENST00000609508 535 ntBASIC3.27□□□□□ -1.89
MSH3P20585 AC026585.1-201ENST00000619582 524 ntBASIC3.27□□□□□ -1.89
MSH3P20585 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC3.27□□□□□ -1.89
MSH3P20585 AC068792.1-201ENST00000621354 417 ntBASIC3.27□□□□□ -1.89
MSH3P20585 AC091953.2-201ENST00000623979 160 ntBASIC3.27□□□□□ -1.89
MSH3P20585 PISRT1-201ENST00000626175 531 ntBASIC3.27□□□□□ -1.89
MSH3P20585 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC3.27□□□□□ -1.89
MSH3P20585 AC110994.2-201ENST00000635481 492 ntBASIC3.27□□□□□ -1.89
MSH3P20585 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC3.27□□□□□ -1.89
MSH3P20585 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
MSH3P20585 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.27□□□□□ -1.89
MSH3P20585 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.26□□□□□ -1.89
MSH3P20585 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.26□□□□□ -1.89
MSH3P20585 AC093010.3-201ENST00000570269 15214 ntBASIC3.26□□□□□ -1.89
MSH3P20585 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC3.26□□□□□ -1.89
MSH3P20585 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC3.26□□□□□ -1.89
MSH3P20585 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
MSH3P20585 SNORA63.1-201ENST00000362493 131 ntBASIC3.26□□□□□ -1.89
MSH3P20585 RNU6-1155P-201ENST00000363554 107 ntBASIC3.26□□□□□ -1.89
MSH3P20585 RNU5A-6P-201ENST00000384136 116 ntBASIC3.26□□□□□ -1.89
MSH3P20585 RNU6-1215P-201ENST00000384441 102 ntBASIC3.26□□□□□ -1.89
MSH3P20585 MIR34B-201ENST00000385076 84 ntBASIC3.26□□□□□ -1.89
MSH3P20585 U3.19-201ENST00000390893 196 ntBASIC3.26□□□□□ -1.89
MSH3P20585 SNORA48.8-201ENST00000391324 134 ntBASIC3.26□□□□□ -1.89
MSH3P20585 RNA5SP293-201ENST00000410527 113 ntBASIC3.26□□□□□ -1.89
MSH3P20585 RNU2-71P-201ENST00000411395 189 ntBASIC3.26□□□□□ -1.89
MSH3P20585 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC3.26□□□□□ -1.89
MSH3P20585 MTND1P21-201ENST00000412991 285 ntBASIC3.26□□□□□ -1.89
MSH3P20585 BEND7P1-201ENST00000422058 457 ntBASIC3.26□□□□□ -1.89
MSH3P20585 RPS3AP44-201ENST00000425466 790 ntBASIC3.26□□□□□ -1.89
MSH3P20585 AL451062.2-201ENST00000427515 271 ntBASIC3.26□□□□□ -1.89
MSH3P20585 CST9LP2-201ENST00000437612 320 ntBASIC3.26□□□□□ -1.89
MSH3P20585 FTH1P1-201ENST00000437933 532 ntBASIC3.26□□□□□ -1.89
MSH3P20585 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC3.26□□□□□ -1.89
MSH3P20585 HMGB3P11-201ENST00000440127 604 ntBASIC3.26□□□□□ -1.89
MSH3P20585 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC3.26□□□□□ -1.89
MSH3P20585 RAC1P7-201ENST00000445367 377 ntBASIC3.26□□□□□ -1.89
MSH3P20585 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
MSH3P20585 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC3.26□□□□□ -1.89
MSH3P20585 HMGN2P16-201ENST00000456802 261 ntBASIC3.26□□□□□ -1.89
MSH3P20585 RPL21P13-201ENST00000488305 481 ntBASIC3.26□□□□□ -1.89
MSH3P20585 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
MSH3P20585 AL358832.1-201ENST00000497800 389 ntBASIC3.26□□□□□ -1.89
MSH3P20585 AC105252.1-201ENST00000503089 286 ntBASIC3.26□□□□□ -1.89
MSH3P20585 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC3.26□□□□□ -1.89
MSH3P20585 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC3.26□□□□□ -1.89
MSH3P20585 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC3.26□□□□□ -1.89
MSH3P20585 AC074250.1-201ENST00000511117 192 ntBASIC3.26□□□□□ -1.89
MSH3P20585 AC091133.4-201ENST00000511142 308 ntBASIC3.26□□□□□ -1.89
MSH3P20585 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC3.26□□□□□ -1.89
MSH3P20585 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC3.26□□□□□ -1.89
MSH3P20585 AC104027.1-201ENST00000521887 300 ntBASIC3.26□□□□□ -1.89
MSH3P20585 AC107934.1-201ENST00000522215 217 ntBASIC3.26□□□□□ -1.89
MSH3P20585 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC3.26□□□□□ -1.89
MSH3P20585 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC3.26□□□□□ -1.89
MSH3P20585 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC3.26□□□□□ -1.89
MSH3P20585 OR4K8P-201ENST00000578842 1048 ntBASIC3.26□□□□□ -1.89
MSH3P20585 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC3.26□□□□□ -1.89
MSH3P20585 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC3.26□□□□□ -1.89
MSH3P20585 DUXAP4-201ENST00000603046 613 ntBASIC3.26□□□□□ -1.89
MSH3P20585 AC121334.2-201ENST00000605387 271 ntBASIC3.26□□□□□ -1.89
MSH3P20585 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC3.26□□□□□ -1.89
MSH3P20585 AC006023.2-201ENST00000609916 167 ntBASIC3.26□□□□□ -1.89
MSH3P20585 AL157817.1-201ENST00000614264 790 ntBASIC3.26□□□□□ -1.89
MSH3P20585 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC3.26□□□□□ -1.89
MSH3P20585 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.26□□□□□ -1.89
MSH3P20585 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
MSH3P20585 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC3.26□□□□□ -1.89
MSH3P20585 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.26□□□□□ -1.89
MSH3P20585 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC3.26□□□□□ -1.89
MSH3P20585 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
MSH3P20585 MTND5P26-201ENST00000426018 1752 ntBASIC3.25□□□□□ -1.89
MSH3P20585 AL079305.1-201ENST00000623159 3008 ntBASIC3.25□□□□□ -1.89
MSH3P20585 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.25□□□□□ -1.89
MSH3P20585 AL138713.1-201ENST00000624026 2130 ntBASIC3.25□□□□□ -1.89
MSH3P20585 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.25□□□□□ -1.89
MSH3P20585 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.25□□□□□ -1.89
MSH3P20585 RNU4-1-201ENST00000363925 141 ntBASIC3.25□□□□□ -1.89
MSH3P20585 U3.11-201ENST00000364476 212 ntBASIC3.25□□□□□ -1.89
MSH3P20585 RNU6-1078P-201ENST00000364522 103 ntBASIC3.25□□□□□ -1.89
MSH3P20585 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC3.25□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 131.3 ms