Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
HOXD4P09016 AC104563.1-201ENST00000476147 376 ntBASIC2.95□□□□□ -1.94
HOXD4P09016 AP001025.2-201ENST00000490908 477 ntBASIC2.95□□□□□ -1.94
HOXD4P09016 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC2.95□□□□□ -1.94
HOXD4P09016 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC2.95□□□□□ -1.94
HOXD4P09016 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC2.95□□□□□ -1.94
HOXD4P09016 AC010261.1-201ENST00000514411 457 ntTSL 5 BASIC2.95□□□□□ -1.94
HOXD4P09016 RNU6-27P-201ENST00000516146 107 ntBASIC2.95□□□□□ -1.94
HOXD4P09016 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC2.95□□□□□ -1.94
HOXD4P09016 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC2.95□□□□□ -1.94
HOXD4P09016 AC018630.1-201ENST00000541376 925 ntBASIC2.95□□□□□ -1.94
HOXD4P09016 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC2.95□□□□□ -1.94
HOXD4P09016 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC2.95□□□□□ -1.94
HOXD4P09016 AL163153.1-201ENST00000554223 283 ntBASIC2.95□□□□□ -1.94
HOXD4P09016 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC2.95□□□□□ -1.94
HOXD4P09016 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC2.95□□□□□ -1.94
HOXD4P09016 AC069114.1-201ENST00000580927 287 ntTSL 2 BASIC2.95□□□□□ -1.94
HOXD4P09016 SNORD84-203ENST00000584275 78 ntBASIC2.95□□□□□ -1.94
HOXD4P09016 AL353997.4-201ENST00000586196 166 ntBASIC2.95□□□□□ -1.94
HOXD4P09016 XIAPP1-201ENST00000603162 600 ntBASIC2.95□□□□□ -1.94
HOXD4P09016 FBXW7-AS1-201ENST00000605147 372 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
HOXD4P09016 AC104073.3-201ENST00000610942 955 ntBASIC2.95□□□□□ -1.94
HOXD4P09016 AC040168.1-201ENST00000623594 991 ntBASIC2.95□□□□□ -1.94
HOXD4P09016 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC2.95□□□□□ -1.94
HOXD4P09016 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC2.95□□□□□ -1.94
HOXD4P09016 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC2.94□□□□□ -1.94
HOXD4P09016 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC2.94□□□□□ -1.94
HOXD4P09016 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
HOXD4P09016 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
HOXD4P09016 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
HOXD4P09016 U8.9-201ENST00000365667 134 ntBASIC2.94□□□□□ -1.94
HOXD4P09016 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC2.94□□□□□ -1.94
HOXD4P09016 CRP-202ENST00000368110 667 ntTSL 3 BASIC2.94□□□□□ -1.94
HOXD4P09016 RNU6-533P-201ENST00000384144 107 ntBASIC2.94□□□□□ -1.94
HOXD4P09016 RNA5SP129-201ENST00000410276 118 ntBASIC2.94□□□□□ -1.94
HOXD4P09016 RNU6-712P-201ENST00000410558 100 ntBASIC2.94□□□□□ -1.94
HOXD4P09016 AL663109.1-201ENST00000411498 844 ntBASIC2.94□□□□□ -1.94
HOXD4P09016 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC2.94□□□□□ -1.94
HOXD4P09016 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
HOXD4P09016 B3GALNT1P1-201ENST00000420569 975 ntBASIC2.94□□□□□ -1.94
HOXD4P09016 RBM6-203ENST00000421682 684 ntTSL 2 BASIC2.94□□□□□ -1.94
HOXD4P09016 RPL7P46-201ENST00000425129 740 ntBASIC2.94□□□□□ -1.94
HOXD4P09016 USP9YP14-201ENST00000430663 563 ntBASIC2.94□□□□□ -1.94
HOXD4P09016 AL031667.1-201ENST00000440222 725 ntBASIC2.94□□□□□ -1.94
HOXD4P09016 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC2.94□□□□□ -1.94
HOXD4P09016 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC2.94□□□□□ -1.94
HOXD4P09016 AL022238.1-201ENST00000442557 355 ntBASIC2.94□□□□□ -1.94
HOXD4P09016 RPL7P36-201ENST00000444633 681 ntBASIC2.94□□□□□ -1.94
HOXD4P09016 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC2.94□□□□□ -1.94
HOXD4P09016 SSXP1-201ENST00000453640 473 ntBASIC2.94□□□□□ -1.94
HOXD4P09016 TPT1P7-201ENST00000458300 517 ntBASIC2.94□□□□□ -1.94
HOXD4P09016 RPL21P8-201ENST00000465083 535 ntBASIC2.94□□□□□ -1.94
HOXD4P09016 ARL2BPP4-201ENST00000506854 471 ntBASIC2.94□□□□□ -1.94
HOXD4P09016 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
HOXD4P09016 MTND4LP18-201ENST00000526864 291 ntBASIC2.94□□□□□ -1.94
HOXD4P09016 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC2.94□□□□□ -1.94
HOXD4P09016 AC022880.1-201ENST00000534017 973 ntBASIC2.94□□□□□ -1.94
HOXD4P09016 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC2.94□□□□□ -1.94
HOXD4P09016 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC2.94□□□□□ -1.94
HOXD4P09016 AC027807.1-201ENST00000559921 996 ntBASIC2.94□□□□□ -1.94
HOXD4P09016 AC087481.2-201ENST00000565492 330 ntBASIC2.94□□□□□ -1.94
HOXD4P09016 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC2.94□□□□□ -1.94
HOXD4P09016 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC2.94□□□□□ -1.94
HOXD4P09016 AP005057.1-201ENST00000583827 574 ntTSL 4 BASIC2.94□□□□□ -1.94
HOXD4P09016 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC2.94□□□□□ -1.94
HOXD4P09016 AC015871.2-201ENST00000603605 948 ntBASIC2.94□□□□□ -1.94
HOXD4P09016 AC011468.4-201ENST00000603942 409 ntBASIC2.94□□□□□ -1.94
HOXD4P09016 AC055876.5-201ENST00000605667 259 ntBASIC2.94□□□□□ -1.94
HOXD4P09016 AC091965.4-201ENST00000607691 587 ntBASIC2.94□□□□□ -1.94
HOXD4P09016 AC138932.5-201ENST00000617759 563 ntBASIC2.94□□□□□ -1.94
HOXD4P09016 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC2.94□□□□□ -1.94
HOXD4P09016 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC2.94□□□□□ -1.94
HOXD4P09016 AL596245.1-201ENST00000618994 362 ntBASIC2.94□□□□□ -1.94
HOXD4P09016 AL360181.4-201ENST00000621752 134 ntBASIC2.94□□□□□ -1.94
HOXD4P09016 LRRC77P-213ENST00000637727 880 ntBASIC2.94□□□□□ -1.94
HOXD4P09016 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC2.94□□□□□ -1.94
HOXD4P09016 TEX21P-201ENST00000447107 1476 ntBASIC2.94□□□□□ -1.94
HOXD4P09016 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC2.94□□□□□ -1.94
HOXD4P09016 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
HOXD4P09016 CCT4P2-201ENST00000233836 1548 ntBASIC2.93□□□□□ -1.94
HOXD4P09016 ZNF807-201ENST00000328088 1707 ntBASIC2.93□□□□□ -1.94
HOXD4P09016 AL136164.4-201ENST00000625013 2135 ntBASIC2.93□□□□□ -1.94
HOXD4P09016 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
HOXD4P09016 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC2.93□□□□□ -1.94
HOXD4P09016 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC2.93□□□□□ -1.94
HOXD4P09016 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC2.93□□□□□ -1.94
HOXD4P09016 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
HOXD4P09016 API5P2-201ENST00000397055 1498 ntBASIC2.93□□□□□ -1.94
HOXD4P09016 AL161781.1-201ENST00000354277 403 ntBASIC2.93□□□□□ -1.94
HOXD4P09016 MIR422A-201ENST00000362286 90 ntBASIC2.93□□□□□ -1.94
HOXD4P09016 RNU6-853P-201ENST00000364306 107 ntBASIC2.93□□□□□ -1.94
HOXD4P09016 Y_RNA.234-201ENST00000364409 97 ntBASIC2.93□□□□□ -1.94
HOXD4P09016 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC2.93□□□□□ -1.94
HOXD4P09016 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
HOXD4P09016 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC2.93□□□□□ -1.94
HOXD4P09016 IARS-201ENST00000375627 697 ntTSL 3 BASIC2.93□□□□□ -1.94
HOXD4P09016 DEFB109C-201ENST00000382575 264 ntBASIC2.93□□□□□ -1.94
HOXD4P09016 DEFB109B-201ENST00000382656 264 ntBASIC2.93□□□□□ -1.94
HOXD4P09016 RNU6-348P-201ENST00000384386 107 ntBASIC2.93□□□□□ -1.94
HOXD4P09016 MIR887-201ENST00000401258 79 ntBASIC2.93□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 78.6 ms