Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 PCBP1-AS1-278ENST00000625518 864 ntTSL 5 BASIC5.73□□□□□ -1.49
LIMD1Q9UGP4 AL592430.2-201ENST00000633779 486 ntTSL 5 BASIC5.73□□□□□ -1.49
LIMD1Q9UGP4 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
LIMD1Q9UGP4 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
LIMD1Q9UGP4 GPX8-201ENST00000296734 3245 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
LIMD1Q9UGP4 PTPRD-206ENST00000397617 8248 ntTSL 5 BASIC5.73□□□□□ -1.49
LIMD1Q9UGP4 DBT-202ENST00000370132 10799 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
LIMD1Q9UGP4 PSD3-204ENST00000440756 11690 ntAPPRIS ALT2 TSL 5 BASIC5.73□□□□□ -1.49
LIMD1Q9UGP4 IGF1-202ENST00000337514 7359 ntAPPRIS P3 TSL 1 (best) BASIC5.73□□□□□ -1.49
LIMD1Q9UGP4 MAPK10-304ENST00000641341 3984 ntBASIC5.73□□□□□ -1.49
LIMD1Q9UGP4 AC093535.2-201ENST00000624769 2326 ntBASIC5.73□□□□□ -1.49
LIMD1Q9UGP4 MAP2-205ENST00000392194 5303 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
LIMD1Q9UGP4 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
LIMD1Q9UGP4 ETV1-208ENST00000420159 6231 ntTSL 2 BASIC5.72□□□□□ -1.49
LIMD1Q9UGP4 FCHSD2-208ENST00000458644 2215 ntTSL 2 BASIC5.72□□□□□ -1.49
LIMD1Q9UGP4 AL078621.3-201ENST00000623707 2042 ntBASIC5.72□□□□□ -1.49
LIMD1Q9UGP4 ADAM18-201ENST00000265707 2388 ntAPPRIS P3 TSL 1 (best) BASIC5.72□□□□□ -1.49
LIMD1Q9UGP4 SNORA68.2-201ENST00000391263 128 ntBASIC5.72□□□□□ -1.49
LIMD1Q9UGP4 AL354868.1-201ENST00000417077 482 ntBASIC5.72□□□□□ -1.49
LIMD1Q9UGP4 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC5.72□□□□□ -1.49
LIMD1Q9UGP4 Y_RNA.644-201ENST00000459006 113 ntBASIC5.72□□□□□ -1.49
LIMD1Q9UGP4 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC5.72□□□□□ -1.49
LIMD1Q9UGP4 Y_RNA.674-201ENST00000516362 113 ntBASIC5.72□□□□□ -1.49
LIMD1Q9UGP4 AC007458.1-201ENST00000542812 373 ntBASIC5.72□□□□□ -1.49
LIMD1Q9UGP4 MIR4311-201ENST00000580794 100 ntBASIC5.72□□□□□ -1.49
LIMD1Q9UGP4 AC024592.1-202ENST00000590441 341 ntTSL 3 BASIC5.72□□□□□ -1.49
LIMD1Q9UGP4 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC5.72□□□□□ -1.49
LIMD1Q9UGP4 AC099654.2-201ENST00000433031 1980 ntBASIC5.72□□□□□ -1.49
LIMD1Q9UGP4 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
LIMD1Q9UGP4 KCNH5-201ENST00000322893 11290 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
LIMD1Q9UGP4 LINC01277-201ENST00000419957 2398 ntTSL 2 BASIC5.72□□□□□ -1.49
LIMD1Q9UGP4 PRG4-204ENST00000445192 5044 ntAPPRIS P3 TSL 5 BASIC5.72□□□□□ -1.49
LIMD1Q9UGP4 TCF7L2-206ENST00000355995 4073 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
LIMD1Q9UGP4 TRPM6-203ENST00000361255 8271 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
LIMD1Q9UGP4 ZNF24-202ENST00000399061 6282 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
LIMD1Q9UGP4 CUL4B-204ENST00000404115 3264 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
LIMD1Q9UGP4 ANK3-201ENST00000280772 16874 ntAPPRIS P3 TSL 1 (best) BASIC5.72□□□□□ -1.49
LIMD1Q9UGP4 C1orf112-201ENST00000286031 4355 ntAPPRIS P3 TSL 1 (best) BASIC5.71□□□□□ -1.49
LIMD1Q9UGP4 SMAP1-206ENST00000619054 3150 ntTSL 1 (best) BASIC5.71□□□□□ -1.49
LIMD1Q9UGP4 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.49
LIMD1Q9UGP4 TTC6-202ENST00000382320 1972 ntTSL 2 BASIC5.71□□□□□ -1.49
LIMD1Q9UGP4 GTDC1-207ENST00000409298 2209 ntTSL 5 BASIC5.71□□□□□ -1.49
LIMD1Q9UGP4 NBPF14-211ENST00000621070 2701 ntTSL 5 BASIC5.71□□□□□ -1.49
LIMD1Q9UGP4 N4BP2L2-IT2-201ENST00000629393 4890 ntBASIC5.71□□□□□ -1.5
LIMD1Q9UGP4 SGIP1-203ENST00000371037 7768 ntAPPRIS P3 TSL 1 (best) BASIC5.71□□□□□ -1.5
LIMD1Q9UGP4 DOPEY1-201ENST00000237163 7995 ntAPPRIS ALT1 TSL 5 BASIC5.71□□□□□ -1.5
LIMD1Q9UGP4 RNU6-545P-201ENST00000362681 104 ntBASIC5.71□□□□□ -1.5
LIMD1Q9UGP4 Y_RNA.143-201ENST00000363520 106 ntBASIC5.71□□□□□ -1.5
LIMD1Q9UGP4 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
LIMD1Q9UGP4 SNORD78.2-201ENST00000391076 69 ntBASIC5.71□□□□□ -1.5
LIMD1Q9UGP4 AL009179.1-201ENST00000406085 265 ntBASIC5.71□□□□□ -1.5
LIMD1Q9UGP4 AC093655.2-201ENST00000425735 631 ntBASIC5.71□□□□□ -1.5
LIMD1Q9UGP4 AC091390.3-201ENST00000426478 338 ntBASIC5.71□□□□□ -1.5
LIMD1Q9UGP4 AC124916.1-201ENST00000444020 547 ntBASIC5.71□□□□□ -1.5
LIMD1Q9UGP4 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC5.71□□□□□ -1.5
LIMD1Q9UGP4 RPS29P27-201ENST00000463711 170 ntBASIC5.71□□□□□ -1.5
LIMD1Q9UGP4 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC5.71□□□□□ -1.5
LIMD1Q9UGP4 SNORA25.14-201ENST00000516481 132 ntBASIC5.71□□□□□ -1.5
LIMD1Q9UGP4 RNA5SP290-201ENST00000517133 127 ntBASIC5.71□□□□□ -1.5
LIMD1Q9UGP4 RN7SKP147-201ENST00000517154 244 ntBASIC5.71□□□□□ -1.5
LIMD1Q9UGP4 AC136777.2-201ENST00000522979 358 ntBASIC5.71□□□□□ -1.5
LIMD1Q9UGP4 AC107918.3-201ENST00000533272 382 ntBASIC5.71□□□□□ -1.5
LIMD1Q9UGP4 AL355095.1-201ENST00000554451 539 ntTSL 2 BASIC5.71□□□□□ -1.5
LIMD1Q9UGP4 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC5.71□□□□□ -1.5
LIMD1Q9UGP4 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC5.71□□□□□ -1.5
LIMD1Q9UGP4 MIR4330-201ENST00000579077 105 ntBASIC5.71□□□□□ -1.5
LIMD1Q9UGP4 MIR3910-1-201ENST00000580936 111 ntBASIC5.71□□□□□ -1.5
LIMD1Q9UGP4 SMIM24-204ENST00000591708 660 ntAPPRIS ALT2 TSL 2 BASIC5.71□□□□□ -1.5
LIMD1Q9UGP4 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC5.71□□□□□ -1.5
LIMD1Q9UGP4 uc_338.18-201ENST00000615451 175 ntBASIC5.71□□□□□ -1.5
LIMD1Q9UGP4 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC5.71□□□□□ -1.5
LIMD1Q9UGP4 AC100757.1-201ENST00000616872 1835 ntBASIC5.71□□□□□ -1.5
LIMD1Q9UGP4 TGIF1-208ENST00000472042 2214 ntTSL 2 BASIC5.71□□□□□ -1.5
LIMD1Q9UGP4 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC5.71□□□□□ -1.5
LIMD1Q9UGP4 BACH1-201ENST00000286800 5669 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
LIMD1Q9UGP4 AL356489.2-201ENST00000566968 3528 ntBASIC5.7□□□□□ -1.5
LIMD1Q9UGP4 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
LIMD1Q9UGP4 CTAGE5-204ENST00000341749 2912 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
LIMD1Q9UGP4 DYRK1A-202ENST00000339659 8654 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
LIMD1Q9UGP4 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
LIMD1Q9UGP4 MUCL1-201ENST00000308796 470 ntAPPRIS P2 TSL 1 (best) BASIC5.7□□□□□ -1.5
LIMD1Q9UGP4 IGLV4-3-201ENST00000390318 403 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
LIMD1Q9UGP4 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC5.7□□□□□ -1.5
LIMD1Q9UGP4 AC012368.1-201ENST00000438115 552 ntTSL 3 BASIC5.7□□□□□ -1.5
LIMD1Q9UGP4 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC5.7□□□□□ -1.5
LIMD1Q9UGP4 RPL23AP24-201ENST00000458203 385 ntBASIC5.7□□□□□ -1.5
LIMD1Q9UGP4 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC5.7□□□□□ -1.5
LIMD1Q9UGP4 AC093815.1-201ENST00000508637 280 ntBASIC5.7□□□□□ -1.5
LIMD1Q9UGP4 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC5.7□□□□□ -1.5
LIMD1Q9UGP4 RNU6-1212P-201ENST00000517023 104 ntBASIC5.7□□□□□ -1.5
LIMD1Q9UGP4 RNA5SP291-201ENST00000517222 105 ntBASIC5.7□□□□□ -1.5
LIMD1Q9UGP4 AC025755.1-201ENST00000521306 278 ntBASIC5.7□□□□□ -1.5
LIMD1Q9UGP4 RPL10P14-201ENST00000565265 298 ntBASIC5.7□□□□□ -1.5
LIMD1Q9UGP4 AC023575.1-201ENST00000580510 358 ntBASIC5.7□□□□□ -1.5
LIMD1Q9UGP4 SRD5A3-AS1-204ENST00000592823 542 ntTSL 5 BASIC5.7□□□□□ -1.5
LIMD1Q9UGP4 RNF138P2-201ENST00000603490 592 ntBASIC5.7□□□□□ -1.5
LIMD1Q9UGP4 U2.14-201ENST00000615943 113 ntBASIC5.7□□□□□ -1.5
LIMD1Q9UGP4 NBPF26-202ENST00000611287 2701 ntTSL 5 BASIC5.7□□□□□ -1.5
LIMD1Q9UGP4 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC5.7□□□□□ -1.5
LIMD1Q9UGP4 GPHN-204ENST00000543237 2459 ntTSL 2 BASIC5.7□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 102.4 ms