Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 AL133243.3-201ENST00000617415 3004 ntBASIC5.53□□□□□ -1.52
CCDC87Q9NVE4 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC5.53□□□□□ -1.52
CCDC87Q9NVE4 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC5.53□□□□□ -1.52
CCDC87Q9NVE4 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC87Q9NVE4 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC5.53□□□□□ -1.52
CCDC87Q9NVE4 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC87Q9NVE4 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC5.53□□□□□ -1.52
CCDC87Q9NVE4 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC87Q9NVE4 RPL21P65-201ENST00000406094 466 ntBASIC5.53□□□□□ -1.52
CCDC87Q9NVE4 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC87Q9NVE4 BX682237.1-201ENST00000415016 335 ntBASIC5.53□□□□□ -1.52
CCDC87Q9NVE4 PMCHL1-202ENST00000423102 261 ntBASIC5.53□□□□□ -1.52
CCDC87Q9NVE4 RPL23AP69-201ENST00000431134 458 ntBASIC5.53□□□□□ -1.52
CCDC87Q9NVE4 MRPS18BP2-201ENST00000434310 759 ntBASIC5.53□□□□□ -1.52
CCDC87Q9NVE4 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC5.53□□□□□ -1.52
CCDC87Q9NVE4 RPL32P28-201ENST00000443577 397 ntBASIC5.53□□□□□ -1.52
CCDC87Q9NVE4 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC5.53□□□□□ -1.52
CCDC87Q9NVE4 GAPDHP27-201ENST00000447427 1020 ntBASIC5.53□□□□□ -1.52
CCDC87Q9NVE4 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC5.53□□□□□ -1.52
CCDC87Q9NVE4 MTND5P22-201ENST00000458380 195 ntBASIC5.53□□□□□ -1.52
CCDC87Q9NVE4 RPL23AP2-201ENST00000471227 466 ntBASIC5.53□□□□□ -1.52
CCDC87Q9NVE4 AL592156.1-201ENST00000508758 304 ntBASIC5.53□□□□□ -1.52
CCDC87Q9NVE4 AC099522.1-202ENST00000514718 367 ntBASIC5.53□□□□□ -1.52
CCDC87Q9NVE4 RNU6-976P-201ENST00000516086 111 ntBASIC5.53□□□□□ -1.52
CCDC87Q9NVE4 RGS4-209ENST00000531057 544 ntTSL 4 BASIC5.53□□□□□ -1.52
CCDC87Q9NVE4 AC063950.1-201ENST00000552036 308 ntBASIC5.53□□□□□ -1.52
CCDC87Q9NVE4 AC091178.1-203ENST00000584586 279 ntBASIC5.53□□□□□ -1.52
CCDC87Q9NVE4 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC5.53□□□□□ -1.52
CCDC87Q9NVE4 AL670379.4-201ENST00000605279 254 ntBASIC5.53□□□□□ -1.52
CCDC87Q9NVE4 Z98200.1-201ENST00000607298 470 ntBASIC5.53□□□□□ -1.52
CCDC87Q9NVE4 AL138726.1-201ENST00000614873 333 ntBASIC5.53□□□□□ -1.52
CCDC87Q9NVE4 AC039056.2-201ENST00000622261 511 ntBASIC5.53□□□□□ -1.52
CCDC87Q9NVE4 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC5.53□□□□□ -1.52
CCDC87Q9NVE4 AC007823.1-201ENST00000569932 1566 ntBASIC5.53□□□□□ -1.52
CCDC87Q9NVE4 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC5.53□□□□□ -1.52
CCDC87Q9NVE4 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC5.53□□□□□ -1.52
CCDC87Q9NVE4 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC87Q9NVE4 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC87Q9NVE4 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC87Q9NVE4 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
CCDC87Q9NVE4 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC5.52□□□□□ -1.53
CCDC87Q9NVE4 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC5.52□□□□□ -1.53
CCDC87Q9NVE4 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC5.52□□□□□ -1.53
CCDC87Q9NVE4 RNA5SP175-201ENST00000364275 119 ntBASIC5.52□□□□□ -1.53
CCDC87Q9NVE4 CRP-202ENST00000368110 667 ntTSL 3 BASIC5.52□□□□□ -1.53
CCDC87Q9NVE4 RNU1-63P-201ENST00000383902 164 ntBASIC5.52□□□□□ -1.53
CCDC87Q9NVE4 RNU6-128P-201ENST00000383976 107 ntBASIC5.52□□□□□ -1.53
CCDC87Q9NVE4 RNU6-463P-201ENST00000384340 107 ntBASIC5.52□□□□□ -1.53
CCDC87Q9NVE4 RNU6-434P-201ENST00000384376 107 ntBASIC5.52□□□□□ -1.53
CCDC87Q9NVE4 RNU6-601P-201ENST00000384540 107 ntBASIC5.52□□□□□ -1.53
CCDC87Q9NVE4 SNORA68.2-201ENST00000391263 128 ntBASIC5.52□□□□□ -1.53
CCDC87Q9NVE4 AL391417.1-201ENST00000404100 426 ntBASIC5.52□□□□□ -1.53
CCDC87Q9NVE4 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC5.52□□□□□ -1.53
CCDC87Q9NVE4 RPS23P10-201ENST00000416185 486 ntBASIC5.52□□□□□ -1.53
CCDC87Q9NVE4 AC099677.1-201ENST00000420575 175 ntBASIC5.52□□□□□ -1.53
CCDC87Q9NVE4 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC5.52□□□□□ -1.53
CCDC87Q9NVE4 AL591704.1-201ENST00000432574 275 ntBASIC5.52□□□□□ -1.53
CCDC87Q9NVE4 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC5.52□□□□□ -1.53
CCDC87Q9NVE4 RPL29P29-201ENST00000448725 423 ntBASIC5.52□□□□□ -1.53
CCDC87Q9NVE4 FABP5P13-201ENST00000452144 328 ntBASIC5.52□□□□□ -1.53
CCDC87Q9NVE4 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC5.52□□□□□ -1.53
CCDC87Q9NVE4 RPL35AP15-201ENST00000468042 339 ntBASIC5.52□□□□□ -1.53
CCDC87Q9NVE4 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC5.52□□□□□ -1.53
CCDC87Q9NVE4 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC5.52□□□□□ -1.53
CCDC87Q9NVE4 AC008526.1-201ENST00000509149 338 ntBASIC5.52□□□□□ -1.53
CCDC87Q9NVE4 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC5.52□□□□□ -1.53
CCDC87Q9NVE4 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC5.52□□□□□ -1.53
CCDC87Q9NVE4 IL7-206ENST00000520269 456 ntTSL 3 BASIC5.52□□□□□ -1.53
CCDC87Q9NVE4 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC5.52□□□□□ -1.53
CCDC87Q9NVE4 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC5.52□□□□□ -1.53
CCDC87Q9NVE4 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC5.52□□□□□ -1.53
CCDC87Q9NVE4 AC090115.3-201ENST00000553218 849 ntBASIC5.52□□□□□ -1.53
CCDC87Q9NVE4 AL161713.1-201ENST00000555538 145 ntBASIC5.52□□□□□ -1.53
CCDC87Q9NVE4 AL670379.10-201ENST00000604330 253 ntBASIC5.52□□□□□ -1.53
CCDC87Q9NVE4 AL670379.9-201ENST00000605428 253 ntBASIC5.52□□□□□ -1.53
CCDC87Q9NVE4 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC5.52□□□□□ -1.53
CCDC87Q9NVE4 AL359547.2-201ENST00000615810 418 ntBASIC5.52□□□□□ -1.53
CCDC87Q9NVE4 AC099669.2-201ENST00000616549 437 ntBASIC5.52□□□□□ -1.53
CCDC87Q9NVE4 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC5.52□□□□□ -1.53
CCDC87Q9NVE4 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC5.52□□□□□ -1.53
CCDC87Q9NVE4 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
CCDC87Q9NVE4 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC5.52□□□□□ -1.53
CCDC87Q9NVE4 SMG1P4-204ENST00000523028 4131 ntBASIC5.52□□□□□ -1.53
CCDC87Q9NVE4 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC5.52□□□□□ -1.53
CCDC87Q9NVE4 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC5.52□□□□□ -1.53
CCDC87Q9NVE4 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC5.52□□□□□ -1.53
CCDC87Q9NVE4 ZNF519P1-201ENST00000449011 1626 ntBASIC5.52□□□□□ -1.53
CCDC87Q9NVE4 MAPK10-206ENST00000395161 4186 ntTSL 5 BASIC5.52□□□□□ -1.53
CCDC87Q9NVE4 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC5.52□□□□□ -1.53
CCDC87Q9NVE4 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC87Q9NVE4 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC87Q9NVE4 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC5.51□□□□□ -1.53
CCDC87Q9NVE4 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC87Q9NVE4 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC87Q9NVE4 RNU1-83P-201ENST00000363426 164 ntBASIC5.51□□□□□ -1.53
CCDC87Q9NVE4 RNU6-1155P-201ENST00000363554 107 ntBASIC5.51□□□□□ -1.53
CCDC87Q9NVE4 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC87Q9NVE4 RNU6-701P-201ENST00000384059 107 ntBASIC5.51□□□□□ -1.53
CCDC87Q9NVE4 RNU6-393P-201ENST00000384475 107 ntBASIC5.51□□□□□ -1.53
CCDC87Q9NVE4 MIR449B-201ENST00000384995 97 ntBASIC5.51□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 81.2 ms