Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 AC109486.1-201ENST00000486833 374 ntBASIC2.46□□□□□ -2.02
USP42Q9H9J4 AC084024.2-201ENST00000503480 791 ntBASIC2.46□□□□□ -2.02
USP42Q9H9J4 THAP6-205ENST00000504190 1004 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
USP42Q9H9J4 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC2.46□□□□□ -2.02
USP42Q9H9J4 RNA5SP471-201ENST00000516971 106 ntBASIC2.46□□□□□ -2.02
USP42Q9H9J4 CASP1P1-201ENST00000526345 212 ntBASIC2.46□□□□□ -2.02
USP42Q9H9J4 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC2.46□□□□□ -2.02
USP42Q9H9J4 AP001542.1-201ENST00000591314 200 ntBASIC2.46□□□□□ -2.02
USP42Q9H9J4 SNRPGP19-201ENST00000603826 189 ntBASIC2.46□□□□□ -2.02
USP42Q9H9J4 AC108479.2-201ENST00000617314 601 ntBASIC2.46□□□□□ -2.02
USP42Q9H9J4 AC006213.5-201ENST00000619673 288 ntBASIC2.46□□□□□ -2.02
USP42Q9H9J4 OR1S1-201ENST00000624470 978 ntBASIC2.46□□□□□ -2.02
USP42Q9H9J4 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC2.46□□□□□ -2.02
USP42Q9H9J4 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC2.46□□□□□ -2.02
USP42Q9H9J4 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
USP42Q9H9J4 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
USP42Q9H9J4 SNORD56.4-201ENST00000363883 71 ntBASIC2.45□□□□□ -2.02
USP42Q9H9J4 RNA5SP190-201ENST00000365222 118 ntBASIC2.45□□□□□ -2.02
USP42Q9H9J4 MIR627-201ENST00000384979 97 ntBASIC2.45□□□□□ -2.02
USP42Q9H9J4 RNU6-1197P-201ENST00000391183 107 ntBASIC2.45□□□□□ -2.02
USP42Q9H9J4 MIR1287-201ENST00000408492 90 ntBASIC2.45□□□□□ -2.02
USP42Q9H9J4 AL445183.3-201ENST00000414168 502 ntBASIC2.45□□□□□ -2.02
USP42Q9H9J4 RPL27AP8-201ENST00000424277 446 ntBASIC2.45□□□□□ -2.02
USP42Q9H9J4 RPL31P54-201ENST00000429803 370 ntBASIC2.45□□□□□ -2.02
USP42Q9H9J4 AL031659.1-201ENST00000447075 539 ntBASIC2.45□□□□□ -2.02
USP42Q9H9J4 AL592447.1-201ENST00000447592 540 ntBASIC2.45□□□□□ -2.02
USP42Q9H9J4 AC104164.3-201ENST00000467363 1258 ntBASIC2.45□□□□□ -2.02
USP42Q9H9J4 OR52A4P-202ENST00000481634 799 ntBASIC2.45□□□□□ -2.02
USP42Q9H9J4 AC090255.1-201ENST00000495779 349 ntBASIC2.45□□□□□ -2.02
USP42Q9H9J4 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC2.45□□□□□ -2.02
USP42Q9H9J4 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC2.45□□□□□ -2.02
USP42Q9H9J4 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC2.45□□□□□ -2.02
USP42Q9H9J4 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC2.45□□□□□ -2.02
USP42Q9H9J4 AC026780.1-201ENST00000512237 952 ntTSL 3 BASIC2.45□□□□□ -2.02
USP42Q9H9J4 RPPH1-2P-201ENST00000516688 293 ntBASIC2.45□□□□□ -2.02
USP42Q9H9J4 AC022784.5-201ENST00000522241 437 ntBASIC2.45□□□□□ -2.02
USP42Q9H9J4 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC2.45□□□□□ -2.02
USP42Q9H9J4 MGST1-215ENST00000540056 546 ntTSL 3 BASIC2.45□□□□□ -2.02
USP42Q9H9J4 AC090888.1-201ENST00000561335 1141 ntBASIC2.45□□□□□ -2.02
USP42Q9H9J4 OR4K7P-201ENST00000580232 945 ntBASIC2.45□□□□□ -2.02
USP42Q9H9J4 AC010680.1-201ENST00000590024 3590 ntBASIC2.45□□□□□ -2.02
USP42Q9H9J4 AC009314.1-201ENST00000603871 304 ntBASIC2.45□□□□□ -2.02
USP42Q9H9J4 AC097504.2-201ENST00000608088 454 ntBASIC2.45□□□□□ -2.02
USP42Q9H9J4 AP006248.3-201ENST00000623580 594 ntBASIC2.45□□□□□ -2.02
USP42Q9H9J4 AC068880.5-201ENST00000624331 290 ntBASIC2.45□□□□□ -2.02
USP42Q9H9J4 MFSD8-213ENST00000641134 1327 ntBASIC2.45□□□□□ -2.02
USP42Q9H9J4 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC2.44□□□□□ -2.02
USP42Q9H9J4 GDI2P1-201ENST00000429312 1336 ntBASIC2.44□□□□□ -2.02
USP42Q9H9J4 MIR378A-201ENST00000362177 66 ntBASIC2.44□□□□□ -2.02
USP42Q9H9J4 SNORA51.6-201ENST00000384151 125 ntBASIC2.44□□□□□ -2.02
USP42Q9H9J4 MIR9-3-201ENST00000385084 90 ntBASIC2.44□□□□□ -2.02
USP42Q9H9J4 MIR16-1-201ENST00000385271 89 ntBASIC2.44□□□□□ -2.02
USP42Q9H9J4 AC016769.3-201ENST00000396562 315 ntBASIC2.44□□□□□ -2.02
USP42Q9H9J4 RNU6-321P-201ENST00000410912 106 ntBASIC2.44□□□□□ -2.02
USP42Q9H9J4 AC005345.1-201ENST00000431868 217 ntBASIC2.44□□□□□ -2.02
USP42Q9H9J4 ZBTB8OS-205ENST00000465588 548 ntTSL 2 BASIC2.44□□□□□ -2.02
USP42Q9H9J4 AL049714.1-201ENST00000466686 347 ntBASIC2.44□□□□□ -2.02
USP42Q9H9J4 AC048346.1-201ENST00000510247 144 ntBASIC2.44□□□□□ -2.02
USP42Q9H9J4 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC2.44□□□□□ -2.02
USP42Q9H9J4 AL353811.1-201ENST00000602851 736 ntTSL 5 BASIC2.44□□□□□ -2.02
USP42Q9H9J4 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC2.44□□□□□ -2.02
USP42Q9H9J4 SNHG22-203ENST00000617833 660 ntBASIC2.44□□□□□ -2.02
USP42Q9H9J4 UCA1.1-201ENST00000620952 75 ntBASIC2.44□□□□□ -2.02
USP42Q9H9J4 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC2.44□□□□□ -2.02
USP42Q9H9J4 FO624990.1-201ENST00000636373 85 ntBASIC2.44□□□□□ -2.02
USP42Q9H9J4 AL590396.4-201ENST00000636779 956 ntBASIC2.44□□□□□ -2.02
USP42Q9H9J4 IL33-203ENST00000456383 2501 ntTSL 5 BASIC2.44□□□□□ -2.02
USP42Q9H9J4 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.44□□□□□ -2.02
USP42Q9H9J4 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC2.44□□□□□ -2.02
USP42Q9H9J4 TMSB4XP8-201ENST00000402089 135 ntBASIC2.43□□□□□ -2.02
USP42Q9H9J4 RNU2-47P-201ENST00000410649 186 ntBASIC2.43□□□□□ -2.02
USP42Q9H9J4 TMSB4XP6-201ENST00000415187 135 ntBASIC2.43□□□□□ -2.02
USP42Q9H9J4 TMSB4XP1-201ENST00000424567 135 ntBASIC2.43□□□□□ -2.02
USP42Q9H9J4 AC024082.2-201ENST00000434771 238 ntBASIC2.43□□□□□ -2.02
USP42Q9H9J4 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC2.43□□□□□ -2.02
USP42Q9H9J4 AC002542.1-201ENST00000440683 193 ntBASIC2.43□□□□□ -2.02
USP42Q9H9J4 MTND4LP3-201ENST00000468320 276 ntBASIC2.43□□□□□ -2.02
USP42Q9H9J4 AC132942.1-201ENST00000486753 483 ntBASIC2.43□□□□□ -2.02
USP42Q9H9J4 MTAPP1-201ENST00000489154 819 ntBASIC2.43□□□□□ -2.02
USP42Q9H9J4 AC104564.1-201ENST00000493028 407 ntBASIC2.43□□□□□ -2.02
USP42Q9H9J4 NAA50-206ENST00000493454 964 ntTSL 2 BASIC2.43□□□□□ -2.02
USP42Q9H9J4 RPS27P26-201ENST00000494583 239 ntBASIC2.43□□□□□ -2.02
USP42Q9H9J4 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC2.43□□□□□ -2.02
USP42Q9H9J4 C1GALT1P2-201ENST00000510813 1104 ntBASIC2.43□□□□□ -2.02
USP42Q9H9J4 AL359273.1-201ENST00000510918 627 ntBASIC2.43□□□□□ -2.02
USP42Q9H9J4 OR5BM1P-201ENST00000512021 366 ntBASIC2.43□□□□□ -2.02
USP42Q9H9J4 RN7SKP40-201ENST00000517211 242 ntBASIC2.43□□□□□ -2.02
USP42Q9H9J4 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC2.43□□□□□ -2.02
USP42Q9H9J4 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC2.43□□□□□ -2.02
USP42Q9H9J4 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC2.43□□□□□ -2.02
USP42Q9H9J4 AP003730.2-201ENST00000526385 546 ntTSL 3 BASIC2.43□□□□□ -2.02
USP42Q9H9J4 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC2.43□□□□□ -2.02
USP42Q9H9J4 AC011611.5-201ENST00000552477 578 ntBASIC2.43□□□□□ -2.02
USP42Q9H9J4 MIR5194-201ENST00000582634 120 ntBASIC2.43□□□□□ -2.02
USP42Q9H9J4 AC013444.2-201ENST00000603317 787 ntBASIC2.43□□□□□ -2.02
USP42Q9H9J4 AL356280.1-201ENST00000603614 379 ntBASIC2.43□□□□□ -2.02
USP42Q9H9J4 AC010678.1-201ENST00000614118 713 ntBASIC2.43□□□□□ -2.02
USP42Q9H9J4 AC008568.2-201ENST00000623862 2313 ntBASIC2.43□□□□□ -2.02
USP42Q9H9J4 AC087359.1-201ENST00000508335 1740 ntBASIC2.43□□□□□ -2.02
USP42Q9H9J4 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC2.43□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 102.6 ms