Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 AL512637.2-201ENST00000431287 1256 ntBASIC2.04□□□□□ -2.08
CCDC42Q96M95 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC2.04□□□□□ -2.08
CCDC42Q96M95 AL049641.1-201ENST00000441055 1948 ntBASIC2.04□□□□□ -2.08
CCDC42Q96M95 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC2.04□□□□□ -2.08
CCDC42Q96M95 LINC00412-201ENST00000444744 420 ntTSL 2 BASIC2.04□□□□□ -2.08
CCDC42Q96M95 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC2.04□□□□□ -2.08
CCDC42Q96M95 BIRC6-AS1-201ENST00000455572 697 ntTSL 3 BASIC2.04□□□□□ -2.08
CCDC42Q96M95 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC2.04□□□□□ -2.08
CCDC42Q96M95 C1orf185-202ENST00000467127 747 ntAPPRIS ALT2 TSL 3 BASIC2.04□□□□□ -2.08
CCDC42Q96M95 RPL9P6-201ENST00000492764 598 ntBASIC2.04□□□□□ -2.08
CCDC42Q96M95 MGAT4A-209ENST00000495056 683 ntTSL 2 BASIC2.04□□□□□ -2.08
CCDC42Q96M95 SUMO2P6-201ENST00000505273 288 ntBASIC2.04□□□□□ -2.08
CCDC42Q96M95 AC113420.1-201ENST00000507903 571 ntBASIC2.04□□□□□ -2.08
CCDC42Q96M95 RNU2-44P-201ENST00000516795 194 ntBASIC2.04□□□□□ -2.08
CCDC42Q96M95 PIH1D2-206ENST00000528775 1025 ntTSL 5 BASIC2.04□□□□□ -2.08
CCDC42Q96M95 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC2.04□□□□□ -2.08
CCDC42Q96M95 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC2.04□□□□□ -2.08
CCDC42Q96M95 MTCYBP27-201ENST00000555160 670 ntBASIC2.04□□□□□ -2.08
CCDC42Q96M95 AC135628.1-201ENST00000568867 534 ntBASIC2.04□□□□□ -2.08
CCDC42Q96M95 AC013553.2-201ENST00000604244 589 ntBASIC2.04□□□□□ -2.08
CCDC42Q96M95 LINC02098-202ENST00000609260 554 ntTSL 3 BASIC2.04□□□□□ -2.08
CCDC42Q96M95 AC006213.4-201ENST00000616184 634 ntBASIC2.04□□□□□ -2.08
CCDC42Q96M95 AC244517.12-201ENST00000623581 663 ntBASIC2.04□□□□□ -2.08
CCDC42Q96M95 OR4G11P-202ENST00000642116 1414 ntBASIC2.04□□□□□ -2.08
CCDC42Q96M95 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC2.03□□□□□ -2.08
CCDC42Q96M95 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.03□□□□□ -2.08
CCDC42Q96M95 ANKRD26P2-201ENST00000445530 1710 ntBASIC2.03□□□□□ -2.08
CCDC42Q96M95 FAM133CP-201ENST00000332869 704 ntBASIC2.03□□□□□ -2.08
CCDC42Q96M95 RNU6-619P-201ENST00000365146 108 ntBASIC2.03□□□□□ -2.08
CCDC42Q96M95 MIR325-201ENST00000385260 98 ntBASIC2.03□□□□□ -2.08
CCDC42Q96M95 RPS7P9-201ENST00000414704 586 ntBASIC2.03□□□□□ -2.08
CCDC42Q96M95 BEND7P1-201ENST00000422058 457 ntBASIC2.03□□□□□ -2.08
CCDC42Q96M95 AL590383.1-201ENST00000428602 75 ntBASIC2.03□□□□□ -2.08
CCDC42Q96M95 AL356867.1-201ENST00000429623 299 ntBASIC2.03□□□□□ -2.08
CCDC42Q96M95 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC2.03□□□□□ -2.08
CCDC42Q96M95 RPL26P6-201ENST00000440913 438 ntBASIC2.03□□□□□ -2.08
CCDC42Q96M95 DNM3-IT1-201ENST00000450800 396 ntTSL 3 BASIC2.03□□□□□ -2.08
CCDC42Q96M95 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC2.03□□□□□ -2.08
CCDC42Q96M95 SCARNA17.1-201ENST00000516211 143 ntBASIC2.03□□□□□ -2.08
CCDC42Q96M95 SCARNA17.2-201ENST00000516334 143 ntBASIC2.03□□□□□ -2.08
CCDC42Q96M95 RN7SKP31-201ENST00000516354 278 ntBASIC2.03□□□□□ -2.08
CCDC42Q96M95 MAL2-206ENST00000522187 547 ntTSL 4 BASIC2.03□□□□□ -2.08
CCDC42Q96M95 AC113423.1-201ENST00000523279 289 ntTSL 3 BASIC2.03□□□□□ -2.08
CCDC42Q96M95 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC2.03□□□□□ -2.08
CCDC42Q96M95 CR383656.7-201ENST00000548164 174 ntBASIC2.03□□□□□ -2.08
CCDC42Q96M95 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC2.03□□□□□ -2.08
CCDC42Q96M95 AC107214.2-201ENST00000608204 634 ntBASIC2.03□□□□□ -2.08
CCDC42Q96M95 SCARNA17.4-201ENST00000614296 143 ntBASIC2.03□□□□□ -2.08
CCDC42Q96M95 AC104307.1-201ENST00000616142 196 ntBASIC2.03□□□□□ -2.08
CCDC42Q96M95 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC2.03□□□□□ -2.08
CCDC42Q96M95 DDX10P1-201ENST00000448545 1933 ntBASIC2.03□□□□□ -2.08
CCDC42Q96M95 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC2.02□□□□□ -2.09
CCDC42Q96M95 MTCO1P23-201ENST00000415223 1526 ntBASIC2.02□□□□□ -2.09
CCDC42Q96M95 MTND4P27-201ENST00000450813 1354 ntBASIC2.02□□□□□ -2.09
CCDC42Q96M95 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
CCDC42Q96M95 SNORA16.1-201ENST00000364597 132 ntBASIC2.02□□□□□ -2.09
CCDC42Q96M95 SNORA16B-201ENST00000364674 135 ntBASIC2.02□□□□□ -2.09
CCDC42Q96M95 RNU2-2P-201ENST00000410396 191 ntBASIC2.02□□□□□ -2.09
CCDC42Q96M95 RNU2-47P-201ENST00000410649 186 ntBASIC2.02□□□□□ -2.09
CCDC42Q96M95 TRIM60P5Y-201ENST00000413946 574 ntBASIC2.02□□□□□ -2.09
CCDC42Q96M95 AC005345.1-201ENST00000431868 217 ntBASIC2.02□□□□□ -2.09
CCDC42Q96M95 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
CCDC42Q96M95 Z93403.1-202ENST00000440002 713 ntTSL 3 BASIC2.02□□□□□ -2.09
CCDC42Q96M95 AC096638.1-201ENST00000444678 216 ntBASIC2.02□□□□□ -2.09
CCDC42Q96M95 BMI1P1-201ENST00000445879 941 ntBASIC2.02□□□□□ -2.09
CCDC42Q96M95 NDUFA5P7-201ENST00000452914 242 ntBASIC2.02□□□□□ -2.09
CCDC42Q96M95 COL6A4P2-205ENST00000509855 506 ntBASIC2.02□□□□□ -2.09
CCDC42Q96M95 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC2.02□□□□□ -2.09
CCDC42Q96M95 AP002373.1-201ENST00000544347 729 ntAPPRIS P1 TSL 3 BASIC2.02□□□□□ -2.09
CCDC42Q96M95 AL512310.1-201ENST00000548639 172 ntBASIC2.02□□□□□ -2.09
CCDC42Q96M95 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC2.02□□□□□ -2.09
CCDC42Q96M95 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC2.02□□□□□ -2.09
CCDC42Q96M95 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC2.02□□□□□ -2.09
CCDC42Q96M95 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC2.02□□□□□ -2.09
CCDC42Q96M95 U2.15-201ENST00000611544 191 ntBASIC2.02□□□□□ -2.09
CCDC42Q96M95 U2.16-201ENST00000613119 191 ntBASIC2.02□□□□□ -2.09
CCDC42Q96M95 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC2.02□□□□□ -2.09
CCDC42Q96M95 U2.12-201ENST00000613778 191 ntBASIC2.02□□□□□ -2.09
CCDC42Q96M95 U2.20-201ENST00000613956 192 ntBASIC2.02□□□□□ -2.09
CCDC42Q96M95 U2.9-201ENST00000615427 191 ntBASIC2.02□□□□□ -2.09
CCDC42Q96M95 U2.11-201ENST00000616345 191 ntBASIC2.02□□□□□ -2.09
CCDC42Q96M95 U2.2-201ENST00000616535 191 ntBASIC2.02□□□□□ -2.09
CCDC42Q96M95 U2.3-201ENST00000617785 191 ntBASIC2.02□□□□□ -2.09
CCDC42Q96M95 U2.19-201ENST00000618602 191 ntBASIC2.02□□□□□ -2.09
CCDC42Q96M95 RNU2-1-201ENST00000618664 191 ntBASIC2.02□□□□□ -2.09
CCDC42Q96M95 AL163051.2-201ENST00000618976 735 ntBASIC2.02□□□□□ -2.09
CCDC42Q96M95 U2.6-201ENST00000619225 191 ntBASIC2.02□□□□□ -2.09
CCDC42Q96M95 U2.5-201ENST00000619465 191 ntBASIC2.02□□□□□ -2.09
CCDC42Q96M95 U2.10-201ENST00000620268 191 ntBASIC2.02□□□□□ -2.09
CCDC42Q96M95 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC2.02□□□□□ -2.09
CCDC42Q96M95 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.02□□□□□ -2.09
CCDC42Q96M95 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
CCDC42Q96M95 AC010329.5-201ENST00000623497 2174 ntBASIC2.02□□□□□ -2.09
CCDC42Q96M95 AC080128.1-201ENST00000474389 1917 ntBASIC2.01□□□□□ -2.09
CCDC42Q96M95 SGO1P1-201ENST00000603525 1447 ntBASIC2.01□□□□□ -2.09
CCDC42Q96M95 RNU6-251P-201ENST00000363235 104 ntBASIC2.01□□□□□ -2.09
CCDC42Q96M95 MIR16-1-201ENST00000385271 89 ntBASIC2.01□□□□□ -2.09
CCDC42Q96M95 RNU6-220P-201ENST00000390919 107 ntBASIC2.01□□□□□ -2.09
CCDC42Q96M95 ZNF90P2-204ENST00000419323 1075 ntBASIC2.01□□□□□ -2.09
CCDC42Q96M95 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC2.01□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 126.1 ms