Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC4.26□□□□□ -1.73
CHFRQ96EP1 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC4.26□□□□□ -1.73
CHFRQ96EP1 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC4.26□□□□□ -1.73
CHFRQ96EP1 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
CHFRQ96EP1 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
CHFRQ96EP1 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC4.25□□□□□ -1.73
CHFRQ96EP1 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC4.25□□□□□ -1.73
CHFRQ96EP1 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC4.25□□□□□ -1.73
CHFRQ96EP1 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
CHFRQ96EP1 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC4.25□□□□□ -1.73
CHFRQ96EP1 KPNA2P2-201ENST00000419546 1489 ntBASIC4.25□□□□□ -1.73
CHFRQ96EP1 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
CHFRQ96EP1 USP8P1-201ENST00000494673 3183 ntBASIC4.25□□□□□ -1.73
CHFRQ96EP1 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC4.25□□□□□ -1.73
CHFRQ96EP1 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC4.25□□□□□ -1.73
CHFRQ96EP1 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
CHFRQ96EP1 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
CHFRQ96EP1 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.25□□□□□ -1.73
CHFRQ96EP1 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
CHFRQ96EP1 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
CHFRQ96EP1 MIR208A-201ENST00000362287 71 ntBASIC4.25□□□□□ -1.73
CHFRQ96EP1 RNU5E-8P-201ENST00000363502 116 ntBASIC4.25□□□□□ -1.73
CHFRQ96EP1 Y_RNA.158-201ENST00000363651 101 ntBASIC4.25□□□□□ -1.73
CHFRQ96EP1 5S_rRNA.1-201ENST00000364415 116 ntBASIC4.25□□□□□ -1.73
CHFRQ96EP1 SNORA70.4-201ENST00000365509 134 ntBASIC4.25□□□□□ -1.73
CHFRQ96EP1 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
CHFRQ96EP1 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
CHFRQ96EP1 PTMAP2-201ENST00000397627 327 ntBASIC4.25□□□□□ -1.73
CHFRQ96EP1 AL359634.1-202ENST00000404721 284 ntBASIC4.25□□□□□ -1.73
CHFRQ96EP1 IFNAR2-206ENST00000413881 710 ntTSL 5 BASIC4.25□□□□□ -1.73
CHFRQ96EP1 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC4.25□□□□□ -1.73
CHFRQ96EP1 AC127526.1-201ENST00000417526 366 ntBASIC4.25□□□□□ -1.73
CHFRQ96EP1 RPS15AP40-201ENST00000419621 391 ntBASIC4.25□□□□□ -1.73
CHFRQ96EP1 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC4.25□□□□□ -1.73
CHFRQ96EP1 AC019097.1-201ENST00000424783 735 ntBASIC4.25□□□□□ -1.73
CHFRQ96EP1 MTCYBP10-201ENST00000424905 650 ntBASIC4.25□□□□□ -1.73
CHFRQ96EP1 MTND5P27-201ENST00000428871 1720 ntBASIC4.25□□□□□ -1.73
CHFRQ96EP1 RPL7P4-203ENST00000430239 730 ntBASIC4.25□□□□□ -1.73
CHFRQ96EP1 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC4.25□□□□□ -1.73
CHFRQ96EP1 RPS24P13-201ENST00000442520 397 ntBASIC4.25□□□□□ -1.73
CHFRQ96EP1 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC4.25□□□□□ -1.73
CHFRQ96EP1 LINC00704-202ENST00000443994 418 ntTSL 2 BASIC4.25□□□□□ -1.73
CHFRQ96EP1 AL500522.2-201ENST00000448562 343 ntBASIC4.25□□□□□ -1.73
CHFRQ96EP1 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC4.25□□□□□ -1.73
CHFRQ96EP1 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
CHFRQ96EP1 AP000873.1-201ENST00000463987 400 ntBASIC4.25□□□□□ -1.73
CHFRQ96EP1 RPL37P6-202ENST00000464216 403 ntBASIC4.25□□□□□ -1.73
CHFRQ96EP1 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC4.25□□□□□ -1.73
CHFRQ96EP1 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
CHFRQ96EP1 AC023141.12-201ENST00000512399 199 ntBASIC4.25□□□□□ -1.73
CHFRQ96EP1 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC4.25□□□□□ -1.73
CHFRQ96EP1 RNU6-406P-201ENST00000516470 107 ntBASIC4.25□□□□□ -1.73
CHFRQ96EP1 RN7SKP295-201ENST00000517264 153 ntBASIC4.25□□□□□ -1.73
CHFRQ96EP1 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC4.25□□□□□ -1.73
CHFRQ96EP1 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
CHFRQ96EP1 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
CHFRQ96EP1 AP004242.1-201ENST00000533701 349 ntBASIC4.25□□□□□ -1.73
CHFRQ96EP1 BNIP3P6-201ENST00000549284 499 ntBASIC4.25□□□□□ -1.73
CHFRQ96EP1 AC009803.2-201ENST00000550378 665 ntTSL 5 BASIC4.25□□□□□ -1.73
CHFRQ96EP1 HSPE1P5-201ENST00000561489 272 ntBASIC4.25□□□□□ -1.73
CHFRQ96EP1 AC093519.1-201ENST00000566109 298 ntBASIC4.25□□□□□ -1.73
CHFRQ96EP1 MTND6P33-201ENST00000571794 183 ntBASIC4.25□□□□□ -1.73
CHFRQ96EP1 AC012603.1-201ENST00000606424 528 ntBASIC4.25□□□□□ -1.73
CHFRQ96EP1 RNU6-89P-201ENST00000606519 100 ntBASIC4.25□□□□□ -1.73
CHFRQ96EP1 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
CHFRQ96EP1 AL390240.1-201ENST00000612950 384 ntBASIC4.25□□□□□ -1.73
CHFRQ96EP1 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC4.25□□□□□ -1.73
CHFRQ96EP1 MIR7154-201ENST00000620673 73 ntBASIC4.25□□□□□ -1.73
CHFRQ96EP1 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC4.25□□□□□ -1.73
CHFRQ96EP1 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
CHFRQ96EP1 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
CHFRQ96EP1 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC4.25□□□□□ -1.73
CHFRQ96EP1 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.25□□□□□ -1.73
CHFRQ96EP1 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC4.24□□□□□ -1.73
CHFRQ96EP1 EXOC5P1-201ENST00000510543 1969 ntBASIC4.24□□□□□ -1.73
CHFRQ96EP1 ACEA_U3.1-201ENST00000363057 217 ntBASIC4.24□□□□□ -1.73
CHFRQ96EP1 SET-203ENST00000372688 801 ntTSL 2 BASIC4.24□□□□□ -1.73
CHFRQ96EP1 MIR1-2-201ENST00000384961 85 ntBASIC4.24□□□□□ -1.73
CHFRQ96EP1 CD3D-202ENST00000392884 476 ntTSL 2 BASIC4.24□□□□□ -1.73
CHFRQ96EP1 MRPL42P2-201ENST00000403169 426 ntBASIC4.24□□□□□ -1.73
CHFRQ96EP1 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC4.24□□□□□ -1.73
CHFRQ96EP1 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC4.24□□□□□ -1.73
CHFRQ96EP1 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC4.24□□□□□ -1.73
CHFRQ96EP1 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC4.24□□□□□ -1.73
CHFRQ96EP1 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC4.24□□□□□ -1.73
CHFRQ96EP1 AC007389.2-201ENST00000434630 306 ntBASIC4.24□□□□□ -1.73
CHFRQ96EP1 AC006011.1-201ENST00000442758 349 ntBASIC4.24□□□□□ -1.73
CHFRQ96EP1 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC4.24□□□□□ -1.73
CHFRQ96EP1 RPL29P29-201ENST00000448725 423 ntBASIC4.24□□□□□ -1.73
CHFRQ96EP1 MTND3P16-201ENST00000452205 344 ntBASIC4.24□□□□□ -1.73
CHFRQ96EP1 RNU7-63P-201ENST00000459054 62 ntBASIC4.24□□□□□ -1.73
CHFRQ96EP1 MTCO1P29-201ENST00000496868 288 ntBASIC4.24□□□□□ -1.73
CHFRQ96EP1 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC4.24□□□□□ -1.73
CHFRQ96EP1 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
CHFRQ96EP1 Y_RNA.665-201ENST00000516177 98 ntBASIC4.24□□□□□ -1.73
CHFRQ96EP1 RNU6-201P-201ENST00000517100 61 ntBASIC4.24□□□□□ -1.73
CHFRQ96EP1 RN7SKP40-201ENST00000517211 242 ntBASIC4.24□□□□□ -1.73
CHFRQ96EP1 SOD1P3-201ENST00000518682 454 ntBASIC4.24□□□□□ -1.73
CHFRQ96EP1 AP003072.2-201ENST00000527756 676 ntBASIC4.24□□□□□ -1.73
CHFRQ96EP1 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC4.24□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 106.8 ms