Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 FO393413.1-201ENST00000402892 195 ntBASIC2.97□□□□□ -1.93
HDDC3Q8N4P3 MIR1261-201ENST00000408659 82 ntBASIC2.97□□□□□ -1.93
HDDC3Q8N4P3 RN7SKP140-201ENST00000411196 284 ntBASIC2.97□□□□□ -1.93
HDDC3Q8N4P3 AL136980.1-201ENST00000426764 543 ntTSL 3 BASIC2.97□□□□□ -1.93
HDDC3Q8N4P3 AC063976.3-201ENST00000426849 329 ntBASIC2.97□□□□□ -1.93
HDDC3Q8N4P3 AL365496.1-201ENST00000426885 215 ntBASIC2.97□□□□□ -1.93
HDDC3Q8N4P3 USP9YP24-201ENST00000434374 697 ntBASIC2.97□□□□□ -1.93
HDDC3Q8N4P3 COX7BP2-201ENST00000437976 242 ntBASIC2.97□□□□□ -1.93
HDDC3Q8N4P3 USP9YP17-201ENST00000444617 696 ntBASIC2.97□□□□□ -1.93
HDDC3Q8N4P3 AL513412.1-201ENST00000445708 553 ntTSL 4 BASIC2.97□□□□□ -1.93
HDDC3Q8N4P3 C1orf185-202ENST00000467127 747 ntAPPRIS ALT2 TSL 3 BASIC2.97□□□□□ -1.93
HDDC3Q8N4P3 AC010273.1-201ENST00000504129 946 ntTSL 5 BASIC2.97□□□□□ -1.93
HDDC3Q8N4P3 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC2.97□□□□□ -1.93
HDDC3Q8N4P3 AC093297.2-205ENST00000508123 572 ntTSL 3 BASIC2.97□□□□□ -1.93
HDDC3Q8N4P3 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC2.97□□□□□ -1.93
HDDC3Q8N4P3 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC2.97□□□□□ -1.93
HDDC3Q8N4P3 ZFAND1-217ENST00000521895 885 ntTSL 3 BASIC2.97□□□□□ -1.93
HDDC3Q8N4P3 AP001646.3-201ENST00000526305 446 ntTSL 2 BASIC2.97□□□□□ -1.93
HDDC3Q8N4P3 SETP2-201ENST00000553886 926 ntBASIC2.97□□□□□ -1.93
HDDC3Q8N4P3 AF038458.1-201ENST00000588406 262 ntBASIC2.97□□□□□ -1.93
HDDC3Q8N4P3 AC005498.1-201ENST00000592125 465 ntBASIC2.97□□□□□ -1.93
HDDC3Q8N4P3 AL355877.2-201ENST00000603670 358 ntBASIC2.97□□□□□ -1.93
HDDC3Q8N4P3 AC019159.1-201ENST00000605094 187 ntBASIC2.97□□□□□ -1.93
HDDC3Q8N4P3 ATP1B3P1-201ENST00000605365 821 ntBASIC2.97□□□□□ -1.93
HDDC3Q8N4P3 AC026790.2-201ENST00000606282 430 ntBASIC2.97□□□□□ -1.93
HDDC3Q8N4P3 AL133445.2-201ENST00000611191 527 ntBASIC2.97□□□□□ -1.93
HDDC3Q8N4P3 SDR42E1P2-201ENST00000614861 481 ntBASIC2.97□□□□□ -1.93
HDDC3Q8N4P3 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC2.97□□□□□ -1.93
HDDC3Q8N4P3 AP003399.1-201ENST00000637534 361 ntBASIC2.97□□□□□ -1.93
HDDC3Q8N4P3 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC2.96□□□□□ -1.94
HDDC3Q8N4P3 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
HDDC3Q8N4P3 ZBTB8OSP1-201ENST00000342688 498 ntBASIC2.96□□□□□ -1.94
HDDC3Q8N4P3 AL672167.1-206ENST00000356293 943 ntBASIC2.96□□□□□ -1.94
HDDC3Q8N4P3 RNU6-223P-201ENST00000362830 107 ntBASIC2.96□□□□□ -1.94
HDDC3Q8N4P3 U3.6-201ENST00000363622 211 ntBASIC2.96□□□□□ -1.94
HDDC3Q8N4P3 RNU6-777P-201ENST00000364265 104 ntBASIC2.96□□□□□ -1.94
HDDC3Q8N4P3 RNU6-1180P-201ENST00000364935 107 ntBASIC2.96□□□□□ -1.94
HDDC3Q8N4P3 RNU6-636P-201ENST00000384598 107 ntBASIC2.96□□□□□ -1.94
HDDC3Q8N4P3 MIR196B-201ENST00000384852 84 ntBASIC2.96□□□□□ -1.94
HDDC3Q8N4P3 RPL21P75-201ENST00000396599 483 ntBASIC2.96□□□□□ -1.94
HDDC3Q8N4P3 RPL21P28-201ENST00000401418 483 ntBASIC2.96□□□□□ -1.94
HDDC3Q8N4P3 AL592114.1-201ENST00000403842 483 ntBASIC2.96□□□□□ -1.94
HDDC3Q8N4P3 RNA5SP274-201ENST00000410484 108 ntBASIC2.96□□□□□ -1.94
HDDC3Q8N4P3 UBE2FP1-201ENST00000416536 447 ntBASIC2.96□□□□□ -1.94
HDDC3Q8N4P3 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC2.96□□□□□ -1.94
HDDC3Q8N4P3 AC019097.1-201ENST00000424783 735 ntBASIC2.96□□□□□ -1.94
HDDC3Q8N4P3 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC2.96□□□□□ -1.94
HDDC3Q8N4P3 OR2AS1P-201ENST00000427827 319 ntBASIC2.96□□□□□ -1.94
HDDC3Q8N4P3 AC009969.1-201ENST00000438726 172 ntBASIC2.96□□□□□ -1.94
HDDC3Q8N4P3 MTCYBP3-201ENST00000445588 1137 ntBASIC2.96□□□□□ -1.94
HDDC3Q8N4P3 PTENP1-201ENST00000447117 1215 ntBASIC2.96□□□□□ -1.94
HDDC3Q8N4P3 GAPDHP27-201ENST00000447427 1020 ntBASIC2.96□□□□□ -1.94
HDDC3Q8N4P3 RPS15AP27-201ENST00000449183 343 ntBASIC2.96□□□□□ -1.94
HDDC3Q8N4P3 AL590639.1-201ENST00000456484 337 ntBASIC2.96□□□□□ -1.94
HDDC3Q8N4P3 MTND2P39-201ENST00000457230 764 ntBASIC2.96□□□□□ -1.94
HDDC3Q8N4P3 RPL21P39-201ENST00000463605 483 ntBASIC2.96□□□□□ -1.94
HDDC3Q8N4P3 RPS20P22-201ENST00000473700 357 ntBASIC2.96□□□□□ -1.94
HDDC3Q8N4P3 TRBV12-1-201ENST00000479785 344 ntBASIC2.96□□□□□ -1.94
HDDC3Q8N4P3 RPL21P93-201ENST00000480465 489 ntBASIC2.96□□□□□ -1.94
HDDC3Q8N4P3 AC087190.1-201ENST00000484462 480 ntBASIC2.96□□□□□ -1.94
HDDC3Q8N4P3 AC093591.1-201ENST00000491435 481 ntBASIC2.96□□□□□ -1.94
HDDC3Q8N4P3 AC034222.1-201ENST00000494052 532 ntBASIC2.96□□□□□ -1.94
HDDC3Q8N4P3 RPL21P16-201ENST00000495531 483 ntBASIC2.96□□□□□ -1.94
HDDC3Q8N4P3 MTND3P3-201ENST00000505004 126 ntBASIC2.96□□□□□ -1.94
HDDC3Q8N4P3 AC118282.1-201ENST00000506408 765 ntBASIC2.96□□□□□ -1.94
HDDC3Q8N4P3 TEMN3-AS1-201ENST00000510211 401 ntTSL 3 BASIC2.96□□□□□ -1.94
HDDC3Q8N4P3 AC114781.4-201ENST00000513707 639 ntBASIC2.96□□□□□ -1.94
HDDC3Q8N4P3 AC034159.1-201ENST00000513885 583 ntBASIC2.96□□□□□ -1.94
HDDC3Q8N4P3 NRON-201ENST00000517270 370 ntBASIC2.96□□□□□ -1.94
HDDC3Q8N4P3 AC245166.1-201ENST00000521012 253 ntBASIC2.96□□□□□ -1.94
HDDC3Q8N4P3 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC2.96□□□□□ -1.94
HDDC3Q8N4P3 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC2.96□□□□□ -1.94
HDDC3Q8N4P3 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC2.96□□□□□ -1.94
HDDC3Q8N4P3 AC022662.1-201ENST00000580252 331 ntBASIC2.96□□□□□ -1.94
HDDC3Q8N4P3 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC2.96□□□□□ -1.94
HDDC3Q8N4P3 LINC02109-204ENST00000602801 563 ntTSL 4 BASIC2.96□□□□□ -1.94
HDDC3Q8N4P3 AC007619.2-201ENST00000605743 379 ntBASIC2.96□□□□□ -1.94
HDDC3Q8N4P3 AC131902.3-201ENST00000611767 581 ntBASIC2.96□□□□□ -1.94
HDDC3Q8N4P3 TUG1_2.1-201ENST00000614234 87 ntBASIC2.96□□□□□ -1.94
HDDC3Q8N4P3 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC2.96□□□□□ -1.94
HDDC3Q8N4P3 AC009039.2-201ENST00000624524 529 ntBASIC2.96□□□□□ -1.94
HDDC3Q8N4P3 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC2.96□□□□□ -1.94
HDDC3Q8N4P3 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
HDDC3Q8N4P3 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC2.95□□□□□ -1.94
HDDC3Q8N4P3 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
HDDC3Q8N4P3 AC062016.1-201ENST00000355719 319 ntBASIC2.95□□□□□ -1.94
HDDC3Q8N4P3 RNU4-92P-201ENST00000363783 136 ntBASIC2.95□□□□□ -1.94
HDDC3Q8N4P3 KIF27-203ENST00000376347 1030 ntTSL 5 BASIC2.95□□□□□ -1.94
HDDC3Q8N4P3 CD80-202ENST00000383669 771 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
HDDC3Q8N4P3 AL109755.1-201ENST00000401791 649 ntBASIC2.95□□□□□ -1.94
HDDC3Q8N4P3 RNU2-33P-201ENST00000410344 192 ntBASIC2.95□□□□□ -1.94
HDDC3Q8N4P3 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC2.95□□□□□ -1.94
HDDC3Q8N4P3 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC2.95□□□□□ -1.94
HDDC3Q8N4P3 AC092047.1-201ENST00000424997 240 ntBASIC2.95□□□□□ -1.94
HDDC3Q8N4P3 AC109583.1-201ENST00000432156 268 ntBASIC2.95□□□□□ -1.94
HDDC3Q8N4P3 AC087499.2-201ENST00000432861 149 ntBASIC2.95□□□□□ -1.94
HDDC3Q8N4P3 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC2.95□□□□□ -1.94
HDDC3Q8N4P3 LINC01378-202ENST00000437514 783 ntTSL 3 BASIC2.95□□□□□ -1.94
HDDC3Q8N4P3 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC2.95□□□□□ -1.94
HDDC3Q8N4P3 RPL7P18-201ENST00000478965 734 ntBASIC2.95□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 79.7 ms