Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 RNA5SP492-201ENST00000411330 114 ntBASIC2.59□□□□□ -1.99
SKA3Q8IX90 TPMTP3-201ENST00000411928 735 ntBASIC2.59□□□□□ -1.99
SKA3Q8IX90 HMGB1P11-201ENST00000413899 637 ntBASIC2.59□□□□□ -1.99
SKA3Q8IX90 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC2.59□□□□□ -1.99
SKA3Q8IX90 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC2.59□□□□□ -1.99
SKA3Q8IX90 AL096701.2-201ENST00000416920 238 ntBASIC2.59□□□□□ -1.99
SKA3Q8IX90 AC011233.1-201ENST00000422812 283 ntBASIC2.59□□□□□ -1.99
SKA3Q8IX90 AL445669.1-201ENST00000426743 755 ntBASIC2.59□□□□□ -1.99
SKA3Q8IX90 MTND1P20-201ENST00000430341 950 ntBASIC2.59□□□□□ -1.99
SKA3Q8IX90 AC022018.1-201ENST00000430685 241 ntBASIC2.59□□□□□ -1.99
SKA3Q8IX90 MTND1P9-201ENST00000453775 944 ntBASIC2.59□□□□□ -1.99
SKA3Q8IX90 HSPE1P6-201ENST00000479457 291 ntBASIC2.59□□□□□ -1.99
SKA3Q8IX90 AL049874.1-201ENST00000489560 388 ntBASIC2.59□□□□□ -1.99
SKA3Q8IX90 MTCYBP35-201ENST00000503630 1137 ntBASIC2.59□□□□□ -1.99
SKA3Q8IX90 AC022447.3-201ENST00000506865 495 ntBASIC2.59□□□□□ -1.99
SKA3Q8IX90 SNORA31.1-201ENST00000515993 133 ntBASIC2.59□□□□□ -1.99
SKA3Q8IX90 SNORA31.5-201ENST00000516190 133 ntBASIC2.59□□□□□ -1.99
SKA3Q8IX90 OR5G4P-201ENST00000525251 760 ntBASIC2.59□□□□□ -1.99
SKA3Q8IX90 AP004247.1-201ENST00000531556 1289 ntBASIC2.59□□□□□ -1.99
SKA3Q8IX90 LRRC34P1-201ENST00000542742 915 ntBASIC2.59□□□□□ -1.99
SKA3Q8IX90 AC004486.1-201ENST00000546846 233 ntBASIC2.59□□□□□ -1.99
SKA3Q8IX90 MEG8-218ENST00000556720 456 ntTSL 3 BASIC2.59□□□□□ -1.99
SKA3Q8IX90 H3F3AP1-201ENST00000559984 334 ntBASIC2.59□□□□□ -1.99
SKA3Q8IX90 LINC01584-203ENST00000567231 646 ntTSL 5 BASIC2.59□□□□□ -1.99
SKA3Q8IX90 ISCA1P3-201ENST00000577104 373 ntBASIC2.59□□□□□ -1.99
SKA3Q8IX90 AC060771.1-201ENST00000582031 164 ntBASIC2.59□□□□□ -1.99
SKA3Q8IX90 MIR544B-201ENST00000582372 78 ntBASIC2.59□□□□□ -1.99
SKA3Q8IX90 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC2.59□□□□□ -1.99
SKA3Q8IX90 AC006504.3-201ENST00000586818 523 ntBASIC2.59□□□□□ -1.99
SKA3Q8IX90 BNIP3P22-201ENST00000593399 556 ntBASIC2.59□□□□□ -1.99
SKA3Q8IX90 DUXAP4-201ENST00000603046 613 ntBASIC2.59□□□□□ -1.99
SKA3Q8IX90 AC015871.2-201ENST00000603605 948 ntBASIC2.59□□□□□ -1.99
SKA3Q8IX90 AL357094.1-201ENST00000603845 844 ntBASIC2.59□□□□□ -1.99
SKA3Q8IX90 AL161756.2-201ENST00000604597 246 ntBASIC2.59□□□□□ -1.99
SKA3Q8IX90 AL355493.4-201ENST00000618530 292 ntBASIC2.59□□□□□ -1.99
SKA3Q8IX90 AL603758.1-201ENST00000618654 241 ntBASIC2.59□□□□□ -1.99
SKA3Q8IX90 AC009268.2-201ENST00000621925 457 ntBASIC2.59□□□□□ -1.99
SKA3Q8IX90 AL159972.1-201ENST00000625150 448 ntBASIC2.59□□□□□ -1.99
SKA3Q8IX90 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC2.59□□□□□ -1.99
SKA3Q8IX90 AL035425.3-201ENST00000564206 4996 ntBASIC2.59□□□□□ -2
SKA3Q8IX90 AC233263.6-201ENST00000631132 1963 ntBASIC2.58□□□□□ -2
SKA3Q8IX90 CFHR4-201ENST00000251424 1292 ntTSL 1 (best) BASIC2.58□□□□□ -2
SKA3Q8IX90 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
SKA3Q8IX90 SNORA14A-201ENST00000364773 135 ntBASIC2.58□□□□□ -2
SKA3Q8IX90 RNU6-769P-201ENST00000384407 104 ntBASIC2.58□□□□□ -2
SKA3Q8IX90 RPS4XP3-201ENST00000398541 413 ntBASIC2.58□□□□□ -2
SKA3Q8IX90 FAT1P1-201ENST00000406588 507 ntBASIC2.58□□□□□ -2
SKA3Q8IX90 MIR1305-201ENST00000408300 86 ntBASIC2.58□□□□□ -2
SKA3Q8IX90 RNU6-516P-201ENST00000411381 104 ntBASIC2.58□□□□□ -2
SKA3Q8IX90 RPL7P8-201ENST00000411964 730 ntBASIC2.58□□□□□ -2
SKA3Q8IX90 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC2.58□□□□□ -2
SKA3Q8IX90 ATG3P1-201ENST00000419507 911 ntBASIC2.58□□□□□ -2
SKA3Q8IX90 RPL35AP12-201ENST00000425362 338 ntBASIC2.58□□□□□ -2
SKA3Q8IX90 AL593851.1-201ENST00000426171 157 ntBASIC2.58□□□□□ -2
SKA3Q8IX90 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC2.58□□□□□ -2
SKA3Q8IX90 RPL36AP6-201ENST00000435770 321 ntBASIC2.58□□□□□ -2
SKA3Q8IX90 UBE2V1P13-201ENST00000436983 439 ntBASIC2.58□□□□□ -2
SKA3Q8IX90 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC2.58□□□□□ -2
SKA3Q8IX90 TPT1P14-201ENST00000448018 505 ntBASIC2.58□□□□□ -2
SKA3Q8IX90 AL162389.1-201ENST00000449233 177 ntBASIC2.58□□□□□ -2
SKA3Q8IX90 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC2.58□□□□□ -2
SKA3Q8IX90 RPL31P60-201ENST00000478450 367 ntBASIC2.58□□□□□ -2
SKA3Q8IX90 RPS29P2-201ENST00000479278 136 ntBASIC2.58□□□□□ -2
SKA3Q8IX90 AC004263.1-201ENST00000479327 332 ntBASIC2.58□□□□□ -2
SKA3Q8IX90 RPL9P33-201ENST00000484311 566 ntBASIC2.58□□□□□ -2
SKA3Q8IX90 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC2.58□□□□□ -2
SKA3Q8IX90 RNU6-1129P-201ENST00000515964 104 ntBASIC2.58□□□□□ -2
SKA3Q8IX90 MTATP6P15-201ENST00000527233 835 ntBASIC2.58□□□□□ -2
SKA3Q8IX90 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC2.58□□□□□ -2
SKA3Q8IX90 KLRF2-201ENST00000535540 731 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
SKA3Q8IX90 AL133271.1-201ENST00000538229 291 ntBASIC2.58□□□□□ -2
SKA3Q8IX90 ELOCP31-201ENST00000540463 467 ntBASIC2.58□□□□□ -2
SKA3Q8IX90 ZNF321P-202ENST00000550843 495 ntBASIC2.58□□□□□ -2
SKA3Q8IX90 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC2.58□□□□□ -2
SKA3Q8IX90 C15orf65-201ENST00000569691 729 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
SKA3Q8IX90 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC2.58□□□□□ -2
SKA3Q8IX90 AC011260.1-201ENST00000578420 472 ntBASIC2.58□□□□□ -2
SKA3Q8IX90 MIR3670-2-201ENST00000582974 65 ntBASIC2.58□□□□□ -2
SKA3Q8IX90 MIR4325-201ENST00000583049 90 ntBASIC2.58□□□□□ -2
SKA3Q8IX90 NDUFV2-AS1-202ENST00000583081 399 ntTSL 5 BASIC2.58□□□□□ -2
SKA3Q8IX90 MIR3670-1-201ENST00000584160 65 ntBASIC2.58□□□□□ -2
SKA3Q8IX90 MIR3670-3-201ENST00000584855 65 ntBASIC2.58□□□□□ -2
SKA3Q8IX90 AC106791.2-201ENST00000604680 391 ntBASIC2.58□□□□□ -2
SKA3Q8IX90 FBXW7-AS1-201ENST00000605147 372 ntTSL 1 (best) BASIC2.58□□□□□ -2
SKA3Q8IX90 BCRP9-201ENST00000605312 388 ntBASIC2.58□□□□□ -2
SKA3Q8IX90 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC2.58□□□□□ -2
SKA3Q8IX90 MIR3670-4-201ENST00000612260 65 ntBASIC2.58□□□□□ -2
SKA3Q8IX90 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC2.58□□□□□ -2
SKA3Q8IX90 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC2.58□□□□□ -2
SKA3Q8IX90 AC007671.2-201ENST00000637344 619 ntBASIC2.58□□□□□ -2
SKA3Q8IX90 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC2.58□□□□□ -2
SKA3Q8IX90 AC000403.1-201ENST00000613696 3585 ntBASIC2.58□□□□□ -2
SKA3Q8IX90 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC2.58□□□□□ -2
SKA3Q8IX90 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC2.58□□□□□ -2
SKA3Q8IX90 AC009902.3-201ENST00000606235 2172 ntBASIC2.57□□□□□ -2
SKA3Q8IX90 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC2.57□□□□□ -2
SKA3Q8IX90 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC2.57□□□□□ -2
SKA3Q8IX90 OR4G2P-202ENST00000641004 1759 ntBASIC2.57□□□□□ -2
SKA3Q8IX90 AC011460.1-201ENST00000636268 1834 ntBASIC2.57□□□□□ -2
SKA3Q8IX90 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.57□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 194.8 ms