Protein–RNA interactions for Protein: Q70EK8

USP53, Inactive ubiquitin carboxyl-terminal hydrolase 53, humanhuman

Predictions only

Length 1,073 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP53Q70EK8 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC4.47□□□□□ -1.69
USP53Q70EK8 RPL7AP25-201ENST00000423357 805 ntBASIC4.47□□□□□ -1.69
USP53Q70EK8 AL160275.3-201ENST00000423876 471 ntBASIC4.47□□□□□ -1.69
USP53Q70EK8 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC4.47□□□□□ -1.69
USP53Q70EK8 AL591212.2-201ENST00000433923 257 ntBASIC4.47□□□□□ -1.69
USP53Q70EK8 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC4.47□□□□□ -1.69
USP53Q70EK8 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC4.47□□□□□ -1.69
USP53Q70EK8 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
USP53Q70EK8 AC008264.1-201ENST00000447612 367 ntBASIC4.47□□□□□ -1.69
USP53Q70EK8 AL162388.1-201ENST00000450912 352 ntBASIC4.47□□□□□ -1.69
USP53Q70EK8 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC4.47□□□□□ -1.69
USP53Q70EK8 CYCSP34-201ENST00000458172 304 ntBASIC4.47□□□□□ -1.69
USP53Q70EK8 HSPE1P6-201ENST00000479457 291 ntBASIC4.47□□□□□ -1.69
USP53Q70EK8 RNU6-1069P-201ENST00000516612 133 ntBASIC4.47□□□□□ -1.69
USP53Q70EK8 SNORA31.20-201ENST00000517111 133 ntBASIC4.47□□□□□ -1.69
USP53Q70EK8 IL7-206ENST00000520269 456 ntTSL 3 BASIC4.47□□□□□ -1.69
USP53Q70EK8 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC4.47□□□□□ -1.69
USP53Q70EK8 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC4.47□□□□□ -1.69
USP53Q70EK8 IMMP1LP2-201ENST00000552954 492 ntBASIC4.47□□□□□ -1.69
USP53Q70EK8 AC105129.1-201ENST00000560250 297 ntBASIC4.47□□□□□ -1.69
USP53Q70EK8 AC007151.1-201ENST00000572774 483 ntBASIC4.47□□□□□ -1.69
USP53Q70EK8 AC138761.3-201ENST00000579993 334 ntBASIC4.47□□□□□ -1.69
USP53Q70EK8 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC4.47□□□□□ -1.69
USP53Q70EK8 AC091979.2-201ENST00000607514 214 ntBASIC4.47□□□□□ -1.69
USP53Q70EK8 MIR92B-201ENST00000607575 96 ntBASIC4.47□□□□□ -1.69
USP53Q70EK8 AL138726.1-201ENST00000614873 333 ntBASIC4.47□□□□□ -1.69
USP53Q70EK8 FAM157A-202ENST00000615155 405 ntBASIC4.47□□□□□ -1.69
USP53Q70EK8 AC084781.2-201ENST00000615568 161 ntBASIC4.47□□□□□ -1.69
USP53Q70EK8 LINC00901.1-201ENST00000617252 152 ntBASIC4.47□□□□□ -1.69
USP53Q70EK8 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC4.47□□□□□ -1.69
USP53Q70EK8 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
USP53Q70EK8 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC4.47□□□□□ -1.69
USP53Q70EK8 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC4.47□□□□□ -1.69
USP53Q70EK8 AL445487.1-201ENST00000415694 1580 ntBASIC4.47□□□□□ -1.69
USP53Q70EK8 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC4.47□□□□□ -1.69
USP53Q70EK8 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC4.47□□□□□ -1.69
USP53Q70EK8 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC4.47□□□□□ -1.69
USP53Q70EK8 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
USP53Q70EK8 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC4.46□□□□□ -1.69
USP53Q70EK8 SDAD1P2-201ENST00000441308 2028 ntBASIC4.46□□□□□ -1.69
USP53Q70EK8 AC004925.1-201ENST00000624256 2706 ntBASIC4.46□□□□□ -1.69
USP53Q70EK8 ABCB5-201ENST00000258738 2906 ntTSL 1 (best) BASIC4.46□□□□□ -1.69
USP53Q70EK8 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC4.46□□□□□ -1.69
USP53Q70EK8 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC4.46□□□□□ -1.69
USP53Q70EK8 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
USP53Q70EK8 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
USP53Q70EK8 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC4.46□□□□□ -1.7
USP53Q70EK8 LINC01355-201ENST00000566551 5444 ntBASIC4.46□□□□□ -1.7
USP53Q70EK8 MTND4P27-201ENST00000450813 1354 ntBASIC4.46□□□□□ -1.7
USP53Q70EK8 RNU6-335P-201ENST00000364563 113 ntBASIC4.46□□□□□ -1.7
USP53Q70EK8 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC4.46□□□□□ -1.7
USP53Q70EK8 MIR450B-201ENST00000401182 78 ntBASIC4.46□□□□□ -1.7
USP53Q70EK8 MTCYBP4-201ENST00000401524 249 ntBASIC4.46□□□□□ -1.7
USP53Q70EK8 AL592291.1-201ENST00000403830 352 ntBASIC4.46□□□□□ -1.7
USP53Q70EK8 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC4.46□□□□□ -1.7
USP53Q70EK8 RPL36AP10-201ENST00000421785 322 ntBASIC4.46□□□□□ -1.7
USP53Q70EK8 SKA2P1-201ENST00000425592 390 ntBASIC4.46□□□□□ -1.7
USP53Q70EK8 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC4.46□□□□□ -1.7
USP53Q70EK8 AF228730.2-201ENST00000438784 848 ntBASIC4.46□□□□□ -1.7
USP53Q70EK8 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC4.46□□□□□ -1.7
USP53Q70EK8 PRDX3P3-201ENST00000447765 522 ntBASIC4.46□□□□□ -1.7
USP53Q70EK8 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC4.46□□□□□ -1.7
USP53Q70EK8 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC4.46□□□□□ -1.7
USP53Q70EK8 AC005741.1-201ENST00000511094 432 ntBASIC4.46□□□□□ -1.7
USP53Q70EK8 AC104136.1-201ENST00000512969 394 ntBASIC4.46□□□□□ -1.7
USP53Q70EK8 RN7SKP24-201ENST00000515888 284 ntBASIC4.46□□□□□ -1.7
USP53Q70EK8 IGLVIV-65-201ENST00000517313 360 ntBASIC4.46□□□□□ -1.7
USP53Q70EK8 APOOP3-201ENST00000536787 586 ntBASIC4.46□□□□□ -1.7
USP53Q70EK8 MEG8-215ENST00000555354 469 ntTSL 3 BASIC4.46□□□□□ -1.7
USP53Q70EK8 AL355836.1-201ENST00000555951 870 ntBASIC4.46□□□□□ -1.7
USP53Q70EK8 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC4.46□□□□□ -1.7
USP53Q70EK8 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC4.46□□□□□ -1.7
USP53Q70EK8 AC124303.1-201ENST00000605703 360 ntBASIC4.46□□□□□ -1.7
USP53Q70EK8 AC022418.1-201ENST00000624118 445 ntBASIC4.46□□□□□ -1.7
USP53Q70EK8 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
USP53Q70EK8 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
USP53Q70EK8 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC4.46□□□□□ -1.7
USP53Q70EK8 ARHGAP42P3-201ENST00000443989 2508 ntBASIC4.46□□□□□ -1.7
USP53Q70EK8 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC4.46□□□□□ -1.7
USP53Q70EK8 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
USP53Q70EK8 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC4.46□□□□□ -1.7
USP53Q70EK8 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
USP53Q70EK8 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
USP53Q70EK8 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC4.45□□□□□ -1.7
USP53Q70EK8 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC4.45□□□□□ -1.7
USP53Q70EK8 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
USP53Q70EK8 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC4.45□□□□□ -1.7
USP53Q70EK8 Y_RNA.132-201ENST00000363421 102 ntBASIC4.45□□□□□ -1.7
USP53Q70EK8 SNORA4.3-201ENST00000365564 137 ntBASIC4.45□□□□□ -1.7
USP53Q70EK8 SNORA70C-201ENST00000384538 135 ntBASIC4.45□□□□□ -1.7
USP53Q70EK8 AL590704.1-201ENST00000402856 794 ntBASIC4.45□□□□□ -1.7
USP53Q70EK8 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC4.45□□□□□ -1.7
USP53Q70EK8 RNU6-370P-201ENST00000411008 104 ntBASIC4.45□□□□□ -1.7
USP53Q70EK8 RPS12P24-201ENST00000412619 387 ntBASIC4.45□□□□□ -1.7
USP53Q70EK8 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC4.45□□□□□ -1.7
USP53Q70EK8 AL139095.3-201ENST00000419672 1203 ntBASIC4.45□□□□□ -1.7
USP53Q70EK8 PDSS1P1-201ENST00000422953 1114 ntBASIC4.45□□□□□ -1.7
USP53Q70EK8 HMGB1P27-201ENST00000431429 603 ntBASIC4.45□□□□□ -1.7
USP53Q70EK8 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC4.45□□□□□ -1.7
USP53Q70EK8 RPL32P28-201ENST00000443577 397 ntBASIC4.45□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 74.6 ms