Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 AC096533.1-201ENST00000411645 353 ntBASIC1.07□□□□□ -2.24
CSPG4Q6UVK1 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC1.07□□□□□ -2.24
CSPG4Q6UVK1 RPL23AP35-201ENST00000451906 501 ntBASIC1.07□□□□□ -2.24
CSPG4Q6UVK1 RPL21P131-201ENST00000497298 483 ntBASIC1.07□□□□□ -2.24
CSPG4Q6UVK1 AC006063.1-201ENST00000512511 560 ntTSL 4 BASIC1.07□□□□□ -2.24
CSPG4Q6UVK1 TEX41-222ENST00000597173 1134 ntTSL 1 (best) BASIC1.07□□□□□ -2.24
CSPG4Q6UVK1 DUXAP4-201ENST00000603046 613 ntBASIC1.07□□□□□ -2.24
CSPG4Q6UVK1 AL109933.3-201ENST00000619095 188 ntBASIC1.07□□□□□ -2.24
CSPG4Q6UVK1 ZNF734P-201ENST00000419494 1534 ntBASIC1.07□□□□□ -2.24
CSPG4Q6UVK1 AC007342.9-201ENST00000623877 1385 ntBASIC1.07□□□□□ -2.24
CSPG4Q6UVK1 KLRF1-201ENST00000279545 1091 ntTSL 1 (best) BASIC1.06□□□□□ -2.24
CSPG4Q6UVK1 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC1.06□□□□□ -2.24
CSPG4Q6UVK1 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC1.06□□□□□ -2.24
CSPG4Q6UVK1 RNU6-997P-201ENST00000384725 107 ntBASIC1.06□□□□□ -2.24
CSPG4Q6UVK1 AC026347.1-201ENST00000463255 474 ntTSL 3 BASIC1.06□□□□□ -2.24
CSPG4Q6UVK1 AC010627.1-201ENST00000503819 1294 ntBASIC1.06□□□□□ -2.24
CSPG4Q6UVK1 AC007115.1-201ENST00000546853 234 ntBASIC1.06□□□□□ -2.24
CSPG4Q6UVK1 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC1.06□□□□□ -2.24
CSPG4Q6UVK1 PRKCQ-AS1-213ENST00000613985 883 ntTSL 5 BASIC1.06□□□□□ -2.24
CSPG4Q6UVK1 AL589935.2-201ENST00000616471 1231 ntBASIC1.06□□□□□ -2.24
CSPG4Q6UVK1 KLRF1-208ENST00000617889 1241 ntAPPRIS P1 TSL 1 (best) BASIC1.06□□□□□ -2.24
CSPG4Q6UVK1 AC006065.5-201ENST00000623427 349 ntBASIC1.06□□□□□ -2.24
CSPG4Q6UVK1 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC1.06□□□□□ -2.24
CSPG4Q6UVK1 OR5H15-202ENST00000641450 1229 ntAPPRIS P1 BASIC1.06□□□□□ -2.24
CSPG4Q6UVK1 IL33-203ENST00000456383 2501 ntTSL 5 BASIC1.06□□□□□ -2.24
CSPG4Q6UVK1 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC1.06□□□□□ -2.24
CSPG4Q6UVK1 AL157700.1-201ENST00000561973 1432 ntBASIC1.06□□□□□ -2.24
CSPG4Q6UVK1 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC1.06□□□□□ -2.24
CSPG4Q6UVK1 AL596028.1-201ENST00000326971 197 ntBASIC1.06□□□□□ -2.24
CSPG4Q6UVK1 RNU4-91P-201ENST00000364778 135 ntBASIC1.06□□□□□ -2.24
CSPG4Q6UVK1 CFHR2-201ENST00000367415 1059 ntAPPRIS P2 TSL 1 (best) BASIC1.06□□□□□ -2.24
CSPG4Q6UVK1 RNU6-35P-201ENST00000384530 107 ntBASIC1.06□□□□□ -2.24
CSPG4Q6UVK1 AL033519.2-201ENST00000403958 392 ntBASIC1.06□□□□□ -2.24
CSPG4Q6UVK1 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC1.06□□□□□ -2.24
CSPG4Q6UVK1 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC1.06□□□□□ -2.24
CSPG4Q6UVK1 AL591212.2-201ENST00000433923 257 ntBASIC1.06□□□□□ -2.24
CSPG4Q6UVK1 TRAPPC2P9-201ENST00000434556 343 ntBASIC1.06□□□□□ -2.24
CSPG4Q6UVK1 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC1.06□□□□□ -2.24
CSPG4Q6UVK1 BMI1P1-201ENST00000445879 941 ntBASIC1.06□□□□□ -2.24
CSPG4Q6UVK1 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC1.06□□□□□ -2.24
CSPG4Q6UVK1 HAUS1P1-201ENST00000505275 832 ntBASIC1.06□□□□□ -2.24
CSPG4Q6UVK1 AC114786.4-201ENST00000508771 728 ntBASIC1.06□□□□□ -2.24
CSPG4Q6UVK1 AC114797.1-201ENST00000514003 728 ntBASIC1.06□□□□□ -2.24
CSPG4Q6UVK1 SNORD59.2-201ENST00000516873 68 ntBASIC1.06□□□□□ -2.24
CSPG4Q6UVK1 RNA5SP330-201ENST00000517096 96 ntBASIC1.06□□□□□ -2.24
CSPG4Q6UVK1 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC1.06□□□□□ -2.24
CSPG4Q6UVK1 Clostridiales-1.3-201ENST00000637703 147 ntBASIC1.06□□□□□ -2.24
CSPG4Q6UVK1 AP000560.1-201ENST00000624150 1937 ntBASIC1.06□□□□□ -2.24
CSPG4Q6UVK1 ZNF33CP-201ENST00000432492 2030 ntBASIC1.06□□□□□ -2.24
CSPG4Q6UVK1 Y_RNA.85-201ENST00000363014 111 ntBASIC1.05□□□□□ -2.24
CSPG4Q6UVK1 RNU6-198P-201ENST00000384258 104 ntBASIC1.05□□□□□ -2.24
CSPG4Q6UVK1 AC016769.3-201ENST00000396562 315 ntBASIC1.05□□□□□ -2.24
CSPG4Q6UVK1 AC007098.1-201ENST00000420122 367 ntBASIC1.05□□□□□ -2.24
CSPG4Q6UVK1 AL139109.1-201ENST00000455491 297 ntBASIC1.05□□□□□ -2.24
CSPG4Q6UVK1 AC108059.3-201ENST00000456388 214 ntBASIC1.05□□□□□ -2.24
CSPG4Q6UVK1 EIF4E-208ENST00000505992 898 ntTSL 5 BASIC1.05□□□□□ -2.24
CSPG4Q6UVK1 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC1.05□□□□□ -2.24
CSPG4Q6UVK1 AC121758.2-201ENST00000553271 193 ntBASIC1.05□□□□□ -2.24
CSPG4Q6UVK1 MIR3660-201ENST00000584845 100 ntBASIC1.05□□□□□ -2.24
CSPG4Q6UVK1 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC1.05□□□□□ -2.24
CSPG4Q6UVK1 AC245884.12-201ENST00000615364 59 ntBASIC1.05□□□□□ -2.24
CSPG4Q6UVK1 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC1.05□□□□□ -2.24
CSPG4Q6UVK1 AP000676.4-201ENST00000624659 623 ntBASIC1.05□□□□□ -2.24
CSPG4Q6UVK1 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC1.05□□□□□ -2.24
CSPG4Q6UVK1 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC1.05□□□□□ -2.24
CSPG4Q6UVK1 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC1.05□□□□□ -2.24
CSPG4Q6UVK1 AL358075.1-201ENST00000450004 649 ntTSL 3 BASIC1.05□□□□□ -2.24
CSPG4Q6UVK1 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC1.05□□□□□ -2.24
CSPG4Q6UVK1 AC011405.1-201ENST00000514207 248 ntTSL 3 BASIC1.05□□□□□ -2.24
CSPG4Q6UVK1 ELOC-204ENST00000519487 814 ntAPPRIS P1 TSL 2 BASIC1.05□□□□□ -2.24
CSPG4Q6UVK1 HMGB1P46-201ENST00000520062 610 ntBASIC1.05□□□□□ -2.24
CSPG4Q6UVK1 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC1.05□□□□□ -2.24
CSPG4Q6UVK1 IMMP1LP2-201ENST00000552954 492 ntBASIC1.05□□□□□ -2.24
CSPG4Q6UVK1 AC105245.1-201ENST00000581934 244 ntBASIC1.05□□□□□ -2.24
CSPG4Q6UVK1 AC097504.2-201ENST00000608088 454 ntBASIC1.05□□□□□ -2.24
CSPG4Q6UVK1 CENPCP1-201ENST00000533085 2578 ntBASIC1.05□□□□□ -2.24
CSPG4Q6UVK1 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.05□□□□□ -2.24
CSPG4Q6UVK1 AC011477.1-204ENST00000623416 1325 ntBASIC1.04□□□□□ -2.24
CSPG4Q6UVK1 MTND5P10-201ENST00000603719 1809 ntBASIC1.04□□□□□ -2.24
CSPG4Q6UVK1 MIR92A2-201ENST00000385299 75 ntBASIC1.04□□□□□ -2.24
CSPG4Q6UVK1 RN7SKP200-201ENST00000410564 320 ntBASIC1.04□□□□□ -2.24
CSPG4Q6UVK1 AL049649.1-202ENST00000412405 414 ntTSL 3 BASIC1.04□□□□□ -2.24
CSPG4Q6UVK1 MORF4L1P7-201ENST00000426038 703 ntBASIC1.04□□□□□ -2.24
CSPG4Q6UVK1 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC1.04□□□□□ -2.24
CSPG4Q6UVK1 UBE2V1P13-201ENST00000436983 439 ntBASIC1.04□□□□□ -2.24
CSPG4Q6UVK1 UBBP3-201ENST00000445497 241 ntBASIC1.04□□□□□ -2.24
CSPG4Q6UVK1 TPRKBP1-201ENST00000456243 481 ntBASIC1.04□□□□□ -2.24
CSPG4Q6UVK1 MRPL42P6-201ENST00000486397 371 ntBASIC1.04□□□□□ -2.24
CSPG4Q6UVK1 AC105313.1-201ENST00000509121 353 ntBASIC1.04□□□□□ -2.24
CSPG4Q6UVK1 AC096734.1-201ENST00000511279 1128 ntTSL 1 (best) BASIC1.04□□□□□ -2.24
CSPG4Q6UVK1 AC087242.1-201ENST00000536931 572 ntTSL 4 BASIC1.04□□□□□ -2.24
CSPG4Q6UVK1 HSPE1P3-201ENST00000559254 309 ntBASIC1.04□□□□□ -2.24
CSPG4Q6UVK1 AC009127.3-201ENST00000570531 403 ntBASIC1.04□□□□□ -2.24
CSPG4Q6UVK1 RNA5SP108-201ENST00000605921 117 ntBASIC1.04□□□□□ -2.24
CSPG4Q6UVK1 MIR6840-201ENST00000611937 71 ntBASIC1.04□□□□□ -2.24
CSPG4Q6UVK1 INPP4B-223ENST00000630044 354 ntTSL 5 BASIC1.04□□□□□ -2.24
CSPG4Q6UVK1 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC1.04□□□□□ -2.24
CSPG4Q6UVK1 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC1.04□□□□□ -2.24
CSPG4Q6UVK1 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.04□□□□□ -2.24
CSPG4Q6UVK1 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC1.04□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 130 ms