Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC012443.1-201ENST00000605605 231 ntBASIC2.02□□□□□ -2.09
FOXA1P55317 AC093673.2-201ENST00000609674 331 ntBASIC2.02□□□□□ -2.09
FOXA1P55317 AL161734.1-201ENST00000609720 557 ntBASIC2.02□□□□□ -2.09
FOXA1P55317 AC005332.6-201ENST00000613178 446 ntBASIC2.02□□□□□ -2.09
FOXA1P55317 AP003485.1-201ENST00000625093 753 ntBASIC2.02□□□□□ -2.09
FOXA1P55317 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.02□□□□□ -2.09
FOXA1P55317 MIR203B-201ENST00000636080 86 ntBASIC2.02□□□□□ -2.09
FOXA1P55317 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC2.02□□□□□ -2.09
FOXA1P55317 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC2.02□□□□□ -2.09
FOXA1P55317 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
FOXA1P55317 KLRC1-202ENST00000359151 1407 ntAPPRIS P4 TSL 1 (best) BASIC2.01□□□□□ -2.09
FOXA1P55317 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC2.01□□□□□ -2.09
FOXA1P55317 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
FOXA1P55317 AL513185.3-201ENST00000433335 1300 ntBASIC2.01□□□□□ -2.09
FOXA1P55317 AC107982.1-201ENST00000507171 1300 ntBASIC2.01□□□□□ -2.09
FOXA1P55317 RNU6-216P-201ENST00000363282 104 ntBASIC2.01□□□□□ -2.09
FOXA1P55317 RNA5SP138-201ENST00000365098 114 ntBASIC2.01□□□□□ -2.09
FOXA1P55317 RNA5SP37-201ENST00000365420 130 ntBASIC2.01□□□□□ -2.09
FOXA1P55317 RNU6-882P-201ENST00000391025 103 ntBASIC2.01□□□□□ -2.09
FOXA1P55317 AL023284.1-201ENST00000403956 276 ntBASIC2.01□□□□□ -2.09
FOXA1P55317 CoTC_ribozyme.1-201ENST00000408104 192 ntBASIC2.01□□□□□ -2.09
FOXA1P55317 MIR1261-201ENST00000408659 82 ntBASIC2.01□□□□□ -2.09
FOXA1P55317 RNU4-53P-201ENST00000410828 140 ntBASIC2.01□□□□□ -2.09
FOXA1P55317 AL139156.1-201ENST00000412785 841 ntBASIC2.01□□□□□ -2.09
FOXA1P55317 MYO16-AS2-201ENST00000412809 436 ntTSL 3 BASIC2.01□□□□□ -2.09
FOXA1P55317 MTND4P3-201ENST00000417829 541 ntBASIC2.01□□□□□ -2.09
FOXA1P55317 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC2.01□□□□□ -2.09
FOXA1P55317 AL589946.1-201ENST00000421465 420 ntTSL 3 BASIC2.01□□□□□ -2.09
FOXA1P55317 MTND2P5-201ENST00000432656 1006 ntBASIC2.01□□□□□ -2.09
FOXA1P55317 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC2.01□□□□□ -2.09
FOXA1P55317 RAC1P7-201ENST00000445367 377 ntBASIC2.01□□□□□ -2.09
FOXA1P55317 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC2.01□□□□□ -2.09
FOXA1P55317 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC2.01□□□□□ -2.09
FOXA1P55317 ARL13A-202ENST00000450049 1102 ntAPPRIS P1 TSL 5 BASIC2.01□□□□□ -2.09
FOXA1P55317 AC026410.2-201ENST00000460281 156 ntBASIC2.01□□□□□ -2.09
FOXA1P55317 AC128713.1-201ENST00000471495 306 ntBASIC2.01□□□□□ -2.09
FOXA1P55317 MRPL42P6-201ENST00000486397 371 ntBASIC2.01□□□□□ -2.09
FOXA1P55317 AC093752.1-206ENST00000511823 336 ntBASIC2.01□□□□□ -2.09
FOXA1P55317 AC087808.1-201ENST00000520501 361 ntBASIC2.01□□□□□ -2.09
FOXA1P55317 CR383656.7-201ENST00000548164 174 ntBASIC2.01□□□□□ -2.09
FOXA1P55317 OR4K7P-201ENST00000580232 945 ntBASIC2.01□□□□□ -2.09
FOXA1P55317 AP002826.1-201ENST00000608835 315 ntBASIC2.01□□□□□ -2.09
FOXA1P55317 AC092574.1-201ENST00000609771 420 ntBASIC2.01□□□□□ -2.09
FOXA1P55317 AC009237.15-201ENST00000610252 501 ntBASIC2.01□□□□□ -2.09
FOXA1P55317 RNU6-1192P-201ENST00000612197 107 ntBASIC2.01□□□□□ -2.09
FOXA1P55317 RNU6-489P-201ENST00000618289 107 ntBASIC2.01□□□□□ -2.09
FOXA1P55317 AC253576.2-201ENST00000618815 580 ntBASIC2.01□□□□□ -2.09
FOXA1P55317 AC084824.4-201ENST00000620106 731 ntBASIC2.01□□□□□ -2.09
FOXA1P55317 AC004009.2-201ENST00000623016 728 ntBASIC2.01□□□□□ -2.09
FOXA1P55317 AC010872.1-201ENST00000624225 675 ntBASIC2.01□□□□□ -2.09
FOXA1P55317 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC2.01□□□□□ -2.09
FOXA1P55317 AC120349.2-201ENST00000625002 298 ntBASIC2.01□□□□□ -2.09
FOXA1P55317 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.01□□□□□ -2.09
FOXA1P55317 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2□□□□□ -2.09
FOXA1P55317 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2□□□□□ -2.09
FOXA1P55317 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2□□□□□ -2.09
FOXA1P55317 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC2□□□□□ -2.09
FOXA1P55317 RNU1-91P-201ENST00000364746 163 ntBASIC2□□□□□ -2.09
FOXA1P55317 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC2□□□□□ -2.09
FOXA1P55317 RNU6-224P-201ENST00000384055 107 ntBASIC2□□□□□ -2.09
FOXA1P55317 MIR135A2-201ENST00000384854 100 ntBASIC2□□□□□ -2.09
FOXA1P55317 RSL24D1P4-201ENST00000400938 484 ntBASIC2□□□□□ -2.09
FOXA1P55317 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC2□□□□□ -2.09
FOXA1P55317 AL161449.1-201ENST00000414531 1199 ntBASIC2□□□□□ -2.09
FOXA1P55317 AL049765.1-201ENST00000416237 573 ntTSL 5 BASIC2□□□□□ -2.09
FOXA1P55317 AL513477.1-202ENST00000417061 214 ntBASIC2□□□□□ -2.09
FOXA1P55317 AC019178.2-201ENST00000423595 505 ntBASIC2□□□□□ -2.09
FOXA1P55317 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC2□□□□□ -2.09
FOXA1P55317 AC007742.1-201ENST00000425789 329 ntBASIC2□□□□□ -2.09
FOXA1P55317 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2□□□□□ -2.09
FOXA1P55317 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC2□□□□□ -2.09
FOXA1P55317 ELOCP26-201ENST00000436067 329 ntBASIC2□□□□□ -2.09
FOXA1P55317 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC2□□□□□ -2.09
FOXA1P55317 OFD1P3Y-201ENST00000453312 783 ntBASIC2□□□□□ -2.09
FOXA1P55317 SUMO2P2-201ENST00000456482 255 ntBASIC2□□□□□ -2.09
FOXA1P55317 AL359385.1-201ENST00000456509 365 ntBASIC2□□□□□ -2.09
FOXA1P55317 AL137847.2-201ENST00000458111 527 ntTSL 3 BASIC2□□□□□ -2.09
FOXA1P55317 APOA2-205ENST00000468465 421 ntTSL 2 BASIC2□□□□□ -2.09
FOXA1P55317 RBM43P1-201ENST00000476891 1081 ntBASIC2□□□□□ -2.09
FOXA1P55317 AC023424.2-201ENST00000493479 777 ntBASIC2□□□□□ -2.09
FOXA1P55317 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC2□□□□□ -2.09
FOXA1P55317 MTCYBP16-201ENST00000509187 1129 ntBASIC2□□□□□ -2.09
FOXA1P55317 AC008413.1-201ENST00000511864 177 ntBASIC2□□□□□ -2.09
FOXA1P55317 SNORA70.16-201ENST00000516390 95 ntBASIC2□□□□□ -2.09
FOXA1P55317 AC022360.2-201ENST00000522390 456 ntTSL 3 BASIC2□□□□□ -2.09
FOXA1P55317 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC2□□□□□ -2.09
FOXA1P55317 SNRPGP18-201ENST00000553000 214 ntBASIC2□□□□□ -2.09
FOXA1P55317 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC2□□□□□ -2.09
FOXA1P55317 RPS3AP23-202ENST00000574601 686 ntBASIC2□□□□□ -2.09
FOXA1P55317 MIR3912-201ENST00000577566 105 ntBASIC2□□□□□ -2.09
FOXA1P55317 AC104984.5-201ENST00000586878 94 ntBASIC2□□□□□ -2.09
FOXA1P55317 AL031176.1-201ENST00000604554 466 ntBASIC2□□□□□ -2.09
FOXA1P55317 MIR6895-201ENST00000613497 78 ntBASIC2□□□□□ -2.09
FOXA1P55317 MIR6715A-201ENST00000615929 79 ntBASIC2□□□□□ -2.09
FOXA1P55317 AL590808.1-201ENST00000618696 141 ntBASIC2□□□□□ -2.09
FOXA1P55317 AC010378.1-201ENST00000619270 362 ntBASIC2□□□□□ -2.09
FOXA1P55317 MIR1322-201ENST00000638013 71 ntBASIC2□□□□□ -2.09
FOXA1P55317 IL33-203ENST00000456383 2501 ntTSL 5 BASIC2□□□□□ -2.09
FOXA1P55317 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC2□□□□□ -2.09
FOXA1P55317 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC1.99□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 87.9 ms