Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 RNU6-534P-201ENST00000364877 106 ntBASIC4.27□□□□□ -1.73
SMARCA1P28370 RNU6-74P-201ENST00000384235 107 ntBASIC4.27□□□□□ -1.73
SMARCA1P28370 SNORD3H-201ENST00000384486 214 ntBASIC4.27□□□□□ -1.73
SMARCA1P28370 MIR1-2-201ENST00000384961 85 ntBASIC4.27□□□□□ -1.73
SMARCA1P28370 RPL21P17-201ENST00000397467 475 ntBASIC4.27□□□□□ -1.73
SMARCA1P28370 SYF2P2-201ENST00000417620 583 ntBASIC4.27□□□□□ -1.73
SMARCA1P28370 AL137014.1-201ENST00000420490 1226 ntBASIC4.27□□□□□ -1.73
SMARCA1P28370 AC245054.1-201ENST00000420944 258 ntBASIC4.27□□□□□ -1.73
SMARCA1P28370 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC4.27□□□□□ -1.73
SMARCA1P28370 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC4.27□□□□□ -1.73
SMARCA1P28370 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC4.27□□□□□ -1.73
SMARCA1P28370 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
SMARCA1P28370 RPL7P54-201ENST00000438336 674 ntBASIC4.27□□□□□ -1.73
SMARCA1P28370 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC4.27□□□□□ -1.73
SMARCA1P28370 FDX1P2-201ENST00000450769 375 ntBASIC4.27□□□□□ -1.73
SMARCA1P28370 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC4.27□□□□□ -1.73
SMARCA1P28370 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC4.27□□□□□ -1.73
SMARCA1P28370 RNU6-64P-201ENST00000517119 105 ntBASIC4.27□□□□□ -1.73
SMARCA1P28370 RNU6-1073P-201ENST00000517182 106 ntBASIC4.27□□□□□ -1.73
SMARCA1P28370 RNU1-45P-201ENST00000517191 141 ntBASIC4.27□□□□□ -1.73
SMARCA1P28370 NRON-201ENST00000517270 370 ntBASIC4.27□□□□□ -1.73
SMARCA1P28370 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC4.27□□□□□ -1.73
SMARCA1P28370 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC4.27□□□□□ -1.73
SMARCA1P28370 MTND1P35-201ENST00000526739 508 ntBASIC4.27□□□□□ -1.73
SMARCA1P28370 MGST1-215ENST00000540056 546 ntTSL 3 BASIC4.27□□□□□ -1.73
SMARCA1P28370 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC4.27□□□□□ -1.73
SMARCA1P28370 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC4.27□□□□□ -1.73
SMARCA1P28370 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC4.27□□□□□ -1.73
SMARCA1P28370 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC4.27□□□□□ -1.73
SMARCA1P28370 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC4.27□□□□□ -1.73
SMARCA1P28370 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC4.27□□□□□ -1.73
SMARCA1P28370 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC4.27□□□□□ -1.73
SMARCA1P28370 AC004067.1-201ENST00000608733 700 ntBASIC4.27□□□□□ -1.73
SMARCA1P28370 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
SMARCA1P28370 AC093838.1-201ENST00000613014 469 ntBASIC4.27□□□□□ -1.73
SMARCA1P28370 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC4.27□□□□□ -1.73
SMARCA1P28370 AC019226.1-201ENST00000625666 515 ntBASIC4.27□□□□□ -1.73
SMARCA1P28370 HSPA8P1-201ENST00000425843 1833 ntBASIC4.27□□□□□ -1.73
SMARCA1P28370 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC4.27□□□□□ -1.73
SMARCA1P28370 AC116096.1-201ENST00000566804 2314 ntBASIC4.27□□□□□ -1.73
SMARCA1P28370 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
SMARCA1P28370 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
SMARCA1P28370 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
SMARCA1P28370 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC4.26□□□□□ -1.73
SMARCA1P28370 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
SMARCA1P28370 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
SMARCA1P28370 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
SMARCA1P28370 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
SMARCA1P28370 PAPPA-AS1-201ENST00000445861 2450 ntBASIC4.26□□□□□ -1.73
SMARCA1P28370 RNA5SP124-201ENST00000362739 110 ntBASIC4.26□□□□□ -1.73
SMARCA1P28370 U3.11-201ENST00000364476 212 ntBASIC4.26□□□□□ -1.73
SMARCA1P28370 RNA5SP51-201ENST00000364750 119 ntBASIC4.26□□□□□ -1.73
SMARCA1P28370 Y_RNA.295-201ENST00000364918 102 ntBASIC4.26□□□□□ -1.73
SMARCA1P28370 RNU6-432P-201ENST00000384196 109 ntBASIC4.26□□□□□ -1.73
SMARCA1P28370 PTMAP2-201ENST00000397627 327 ntBASIC4.26□□□□□ -1.73
SMARCA1P28370 RNU2-9P-201ENST00000410194 145 ntBASIC4.26□□□□□ -1.73
SMARCA1P28370 RNU2-37P-201ENST00000410695 177 ntBASIC4.26□□□□□ -1.73
SMARCA1P28370 RNA5SP107-201ENST00000411358 122 ntBASIC4.26□□□□□ -1.73
SMARCA1P28370 ATP5A1P2-201ENST00000412323 255 ntBASIC4.26□□□□□ -1.73
SMARCA1P28370 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC4.26□□□□□ -1.73
SMARCA1P28370 SSXP9-201ENST00000417503 292 ntBASIC4.26□□□□□ -1.73
SMARCA1P28370 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC4.26□□□□□ -1.73
SMARCA1P28370 AC005094.1-201ENST00000440420 368 ntBASIC4.26□□□□□ -1.73
SMARCA1P28370 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC4.26□□□□□ -1.73
SMARCA1P28370 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC4.26□□□□□ -1.73
SMARCA1P28370 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC4.26□□□□□ -1.73
SMARCA1P28370 RPS15AP36-201ENST00000492022 382 ntBASIC4.26□□□□□ -1.73
SMARCA1P28370 AC093278.1-201ENST00000494700 600 ntBASIC4.26□□□□□ -1.73
SMARCA1P28370 SLC25A15P5-201ENST00000508033 253 ntBASIC4.26□□□□□ -1.73
SMARCA1P28370 AC074344.1-201ENST00000512823 224 ntBASIC4.26□□□□□ -1.73
SMARCA1P28370 RNU6-1281P-201ENST00000516223 105 ntBASIC4.26□□□□□ -1.73
SMARCA1P28370 SNORA67.7-201ENST00000516664 135 ntBASIC4.26□□□□□ -1.73
SMARCA1P28370 AC103783.1-201ENST00000520506 373 ntBASIC4.26□□□□□ -1.73
SMARCA1P28370 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC4.26□□□□□ -1.73
SMARCA1P28370 ARL2BPP2-201ENST00000550907 489 ntBASIC4.26□□□□□ -1.73
SMARCA1P28370 AL359212.1-201ENST00000556608 614 ntBASIC4.26□□□□□ -1.73
SMARCA1P28370 MIR3158-1-201ENST00000583596 81 ntBASIC4.26□□□□□ -1.73
SMARCA1P28370 MIR4293-201ENST00000584305 78 ntBASIC4.26□□□□□ -1.73
SMARCA1P28370 AC007621.1-201ENST00000604544 437 ntBASIC4.26□□□□□ -1.73
SMARCA1P28370 BRDTP1-201ENST00000605735 677 ntBASIC4.26□□□□□ -1.73
SMARCA1P28370 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC4.26□□□□□ -1.73
SMARCA1P28370 AC093788.1-201ENST00000609356 927 ntBASIC4.26□□□□□ -1.73
SMARCA1P28370 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC4.26□□□□□ -1.73
SMARCA1P28370 CR392039.5-201ENST00000623201 510 ntBASIC4.26□□□□□ -1.73
SMARCA1P28370 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC4.26□□□□□ -1.73
SMARCA1P28370 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC4.26□□□□□ -1.73
SMARCA1P28370 AC099654.14-201ENST00000638599 341 ntBASIC4.26□□□□□ -1.73
SMARCA1P28370 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
SMARCA1P28370 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
SMARCA1P28370 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
SMARCA1P28370 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
SMARCA1P28370 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
SMARCA1P28370 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
SMARCA1P28370 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC4.26□□□□□ -1.73
SMARCA1P28370 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
SMARCA1P28370 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC4.26□□□□□ -1.73
SMARCA1P28370 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC4.25□□□□□ -1.73
SMARCA1P28370 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
SMARCA1P28370 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
SMARCA1P28370 Y_RNA.22-201ENST00000362492 102 ntBASIC4.25□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 105.7 ms