Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 AL512286.1-201ENST00000439244 400 ntBASIC3.1□□□□□ -1.91
VIMP08670 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC3.1□□□□□ -1.91
VIMP08670 RPS29P12-201ENST00000460178 152 ntBASIC3.1□□□□□ -1.91
VIMP08670 SETP11-201ENST00000473027 690 ntBASIC3.1□□□□□ -1.91
VIMP08670 RPL23AP41-201ENST00000484754 458 ntBASIC3.1□□□□□ -1.91
VIMP08670 RNU6-1282P-201ENST00000516735 96 ntBASIC3.1□□□□□ -1.91
VIMP08670 RNU6-1003P-201ENST00000517099 105 ntBASIC3.1□□□□□ -1.91
VIMP08670 RNU6-64P-201ENST00000517119 105 ntBASIC3.1□□□□□ -1.91
VIMP08670 RNU6-232P-201ENST00000517144 64 ntBASIC3.1□□□□□ -1.91
VIMP08670 DNAJC8P1-201ENST00000554535 372 ntBASIC3.1□□□□□ -1.91
VIMP08670 HMGB1P14-201ENST00000557424 591 ntBASIC3.1□□□□□ -1.91
VIMP08670 AC091489.2-201ENST00000566263 604 ntBASIC3.1□□□□□ -1.91
VIMP08670 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC3.1□□□□□ -1.91
VIMP08670 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC3.1□□□□□ -1.91
VIMP08670 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC3.1□□□□□ -1.91
VIMP08670 AC002545.1-201ENST00000592511 181 ntBASIC3.1□□□□□ -1.91
VIMP08670 UBE2Q2P6-201ENST00000612666 153 ntBASIC3.1□□□□□ -1.91
VIMP08670 AL136313.1-201ENST00000624804 202 ntBASIC3.1□□□□□ -1.91
VIMP08670 AC068724.3-201ENST00000625906 87 ntBASIC3.1□□□□□ -1.91
VIMP08670 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC3.1□□□□□ -1.91
VIMP08670 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC3.1□□□□□ -1.91
VIMP08670 AL445523.1-201ENST00000451184 1362 ntBASIC3.1□□□□□ -1.91
VIMP08670 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.09□□□□□ -1.91
VIMP08670 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC3.09□□□□□ -1.91
VIMP08670 PAPPA-AS1-201ENST00000445861 2450 ntBASIC3.09□□□□□ -1.91
VIMP08670 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC3.09□□□□□ -1.91
VIMP08670 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC3.09□□□□□ -1.91
VIMP08670 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC3.09□□□□□ -1.91
VIMP08670 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC3.09□□□□□ -1.91
VIMP08670 RNU5A-8P-201ENST00000364102 114 ntBASIC3.09□□□□□ -1.91
VIMP08670 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC3.09□□□□□ -1.91
VIMP08670 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC3.09□□□□□ -1.91
VIMP08670 RNU6-1027P-201ENST00000383998 107 ntBASIC3.09□□□□□ -1.91
VIMP08670 RN7SKP202-201ENST00000410439 330 ntBASIC3.09□□□□□ -1.91
VIMP08670 AL389915.1-201ENST00000422463 466 ntBASIC3.09□□□□□ -1.91
VIMP08670 MTND4P20-201ENST00000424125 869 ntBASIC3.09□□□□□ -1.91
VIMP08670 AL590730.1-201ENST00000426283 398 ntTSL 3 BASIC3.09□□□□□ -1.91
VIMP08670 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC3.09□□□□□ -1.91
VIMP08670 USP12PX-201ENST00000432383 1057 ntBASIC3.09□□□□□ -1.91
VIMP08670 AC005094.1-201ENST00000440420 368 ntBASIC3.09□□□□□ -1.91
VIMP08670 BNIP3P2-201ENST00000441221 577 ntBASIC3.09□□□□□ -1.91
VIMP08670 PIGFP3-201ENST00000441918 722 ntBASIC3.09□□□□□ -1.91
VIMP08670 MTATP6P30-201ENST00000443540 664 ntBASIC3.09□□□□□ -1.91
VIMP08670 RPL23AP20-201ENST00000447965 421 ntBASIC3.09□□□□□ -1.91
VIMP08670 ZNF114P1-201ENST00000453500 292 ntBASIC3.09□□□□□ -1.91
VIMP08670 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC3.09□□□□□ -1.91
VIMP08670 snoU13.28-201ENST00000459235 104 ntBASIC3.09□□□□□ -1.91
VIMP08670 KC877373.1-201ENST00000479066 408 ntBASIC3.09□□□□□ -1.91
VIMP08670 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC3.09□□□□□ -1.91
VIMP08670 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC3.09□□□□□ -1.91
VIMP08670 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC3.09□□□□□ -1.91
VIMP08670 AC005178.1-201ENST00000508392 440 ntBASIC3.09□□□□□ -1.91
VIMP08670 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
VIMP08670 OR5BM1P-201ENST00000512021 366 ntBASIC3.09□□□□□ -1.91
VIMP08670 RNU6-759P-201ENST00000516740 103 ntBASIC3.09□□□□□ -1.91
VIMP08670 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
VIMP08670 AC087439.2-201ENST00000519498 552 ntTSL 3 BASIC3.09□□□□□ -1.91
VIMP08670 ZFPM2-AS1-204ENST00000520433 748 ntTSL 3 BASIC3.09□□□□□ -1.91
VIMP08670 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC3.09□□□□□ -1.91
VIMP08670 MTND4LP18-201ENST00000526864 291 ntBASIC3.09□□□□□ -1.91
VIMP08670 DEFB108A-201ENST00000530110 222 ntBASIC3.09□□□□□ -1.91
VIMP08670 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC3.09□□□□□ -1.91
VIMP08670 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC3.09□□□□□ -1.91
VIMP08670 AC007115.1-201ENST00000546853 234 ntBASIC3.09□□□□□ -1.91
VIMP08670 TRAV28-201ENST00000557548 323 ntBASIC3.09□□□□□ -1.91
VIMP08670 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC3.09□□□□□ -1.91
VIMP08670 AL158211.1-201ENST00000566763 763 ntBASIC3.09□□□□□ -1.91
VIMP08670 AL356432.3-201ENST00000568952 465 ntBASIC3.09□□□□□ -1.91
VIMP08670 HMGB1P6-201ENST00000569046 646 ntBASIC3.09□□□□□ -1.91
VIMP08670 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC3.09□□□□□ -1.91
VIMP08670 AL391813.2-201ENST00000609113 322 ntBASIC3.09□□□□□ -1.91
VIMP08670 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC3.09□□□□□ -1.91
VIMP08670 MIR7844-201ENST00000616161 122 ntBASIC3.09□□□□□ -1.91
VIMP08670 AC079248.2-201ENST00000623779 326 ntBASIC3.09□□□□□ -1.91
VIMP08670 AC091564.4-201ENST00000533934 2194 ntBASIC3.09□□□□□ -1.91
VIMP08670 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC3.09□□□□□ -1.92
VIMP08670 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC3.09□□□□□ -1.92
VIMP08670 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC3.09□□□□□ -1.92
VIMP08670 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.08□□□□□ -1.92
VIMP08670 PABPC1P9-201ENST00000426076 1612 ntBASIC3.08□□□□□ -1.92
VIMP08670 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
VIMP08670 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC3.08□□□□□ -1.92
VIMP08670 RNU5F-6P-201ENST00000362979 116 ntBASIC3.08□□□□□ -1.92
VIMP08670 RNU1-64P-201ENST00000365443 163 ntBASIC3.08□□□□□ -1.92
VIMP08670 RNU6-1035P-201ENST00000384477 107 ntBASIC3.08□□□□□ -1.92
VIMP08670 Y_RNA.560-201ENST00000384689 102 ntBASIC3.08□□□□□ -1.92
VIMP08670 MIR554-201ENST00000384874 96 ntBASIC3.08□□□□□ -1.92
VIMP08670 RNU6-278P-201ENST00000390945 109 ntBASIC3.08□□□□□ -1.92
VIMP08670 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC3.08□□□□□ -1.92
VIMP08670 MTCYBP36-201ENST00000404146 440 ntBASIC3.08□□□□□ -1.92
VIMP08670 RPL7P25-201ENST00000404151 721 ntBASIC3.08□□□□□ -1.92
VIMP08670 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC3.08□□□□□ -1.92
VIMP08670 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC3.08□□□□□ -1.92
VIMP08670 AL031429.1-201ENST00000426775 749 ntTSL 2 BASIC3.08□□□□□ -1.92
VIMP08670 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC3.08□□□□□ -1.92
VIMP08670 Z82210.1-201ENST00000440037 231 ntBASIC3.08□□□□□ -1.92
VIMP08670 AC118469.1-201ENST00000442943 488 ntBASIC3.08□□□□□ -1.92
VIMP08670 BMI1P1-201ENST00000445879 941 ntBASIC3.08□□□□□ -1.92
VIMP08670 AL133217.1-201ENST00000450980 425 ntBASIC3.08□□□□□ -1.92
VIMP08670 CYCSP35-201ENST00000451978 304 ntBASIC3.08□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 99.3 ms