Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 FO393413.1-201ENST00000402892 195 ntBASIC1.94□□□□□ -2.1
CPSF4O95639 AL356131.1-201ENST00000405826 414 ntBASIC1.94□□□□□ -2.1
CPSF4O95639 AL355143.1-201ENST00000407101 841 ntBASIC1.94□□□□□ -2.1
CPSF4O95639 Z75741.2-201ENST00000417272 1167 ntBASIC1.94□□□□□ -2.1
CPSF4O95639 LINC01676-201ENST00000420901 410 ntTSL 3 BASIC1.94□□□□□ -2.1
CPSF4O95639 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC1.94□□□□□ -2.1
CPSF4O95639 AL050338.2-202ENST00000431609 956 ntTSL 2 BASIC1.94□□□□□ -2.1
CPSF4O95639 MTND2P20-201ENST00000440805 661 ntBASIC1.94□□□□□ -2.1
CPSF4O95639 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC1.94□□□□□ -2.1
CPSF4O95639 AL359385.1-201ENST00000456509 365 ntBASIC1.94□□□□□ -2.1
CPSF4O95639 NAA50-206ENST00000493454 964 ntTSL 2 BASIC1.94□□□□□ -2.1
CPSF4O95639 AC114912.1-201ENST00000503394 546 ntTSL 3 BASIC1.94□□□□□ -2.1
CPSF4O95639 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC1.94□□□□□ -2.1
CPSF4O95639 SEM1P1-201ENST00000506694 209 ntBASIC1.94□□□□□ -2.1
CPSF4O95639 AC009901.1-201ENST00000506703 541 ntBASIC1.94□□□□□ -2.1
CPSF4O95639 AC114322.1-201ENST00000506771 926 ntBASIC1.94□□□□□ -2.1
CPSF4O95639 AC113347.3-201ENST00000509113 148 ntBASIC1.94□□□□□ -2.1
CPSF4O95639 RAC1P5-201ENST00000512182 576 ntBASIC1.94□□□□□ -2.1
CPSF4O95639 SNORA70.16-201ENST00000516390 95 ntBASIC1.94□□□□□ -2.1
CPSF4O95639 RNA5SP82-201ENST00000516707 92 ntBASIC1.94□□□□□ -2.1
CPSF4O95639 AC091163.3-201ENST00000518269 1144 ntBASIC1.94□□□□□ -2.1
CPSF4O95639 AC010376.1-201ENST00000522101 334 ntBASIC1.94□□□□□ -2.1
CPSF4O95639 AC022861.1-201ENST00000522981 663 ntBASIC1.94□□□□□ -2.1
CPSF4O95639 HSPA8P13-201ENST00000523715 472 ntBASIC1.94□□□□□ -2.1
CPSF4O95639 AC013509.1-201ENST00000524269 339 ntTSL 3 BASIC1.94□□□□□ -2.1
CPSF4O95639 AC011611.4-201ENST00000547721 779 ntTSL 2 BASIC1.94□□□□□ -2.1
CPSF4O95639 AP005205.1-201ENST00000563503 508 ntBASIC1.94□□□□□ -2.1
CPSF4O95639 AC018767.1-201ENST00000566236 405 ntTSL 3 BASIC1.94□□□□□ -2.1
CPSF4O95639 MIR7515HG-213ENST00000585872 758 ntTSL 5 BASIC1.94□□□□□ -2.1
CPSF4O95639 AC243773.3-201ENST00000613270 256 ntBASIC1.94□□□□□ -2.1
CPSF4O95639 MIR6076-201ENST00000617521 113 ntBASIC1.94□□□□□ -2.1
CPSF4O95639 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC1.94□□□□□ -2.1
CPSF4O95639 OR1S1-201ENST00000624470 978 ntBASIC1.94□□□□□ -2.1
CPSF4O95639 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC1.94□□□□□ -2.1
CPSF4O95639 AC013437.2-201ENST00000639587 677 ntBASIC1.94□□□□□ -2.1
CPSF4O95639 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC1.94□□□□□ -2.1
CPSF4O95639 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC1.94□□□□□ -2.1
CPSF4O95639 AC009812.4-201ENST00000569134 1805 ntBASIC1.94□□□□□ -2.1
CPSF4O95639 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC1.93□□□□□ -2.1
CPSF4O95639 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
CPSF4O95639 Y_RNA.472-201ENST00000384322 102 ntBASIC1.93□□□□□ -2.1
CPSF4O95639 RPS4XP3-201ENST00000398541 413 ntBASIC1.93□□□□□ -2.1
CPSF4O95639 RN7SKP32-201ENST00000410167 303 ntBASIC1.93□□□□□ -2.1
CPSF4O95639 AL592310.1-201ENST00000414330 671 ntBASIC1.93□□□□□ -2.1
CPSF4O95639 MTATP6P27-201ENST00000416987 621 ntBASIC1.93□□□□□ -2.1
CPSF4O95639 BEND7P1-201ENST00000422058 457 ntBASIC1.93□□□□□ -2.1
CPSF4O95639 ZDHHC20P2-201ENST00000424108 429 ntBASIC1.93□□□□□ -2.1
CPSF4O95639 SUMO1P4-201ENST00000429430 302 ntBASIC1.93□□□□□ -2.1
CPSF4O95639 AC024082.2-201ENST00000434771 238 ntBASIC1.93□□□□□ -2.1
CPSF4O95639 MTCYBP45-201ENST00000435243 565 ntBASIC1.93□□□□□ -2.1
CPSF4O95639 AC096571.1-202ENST00000506634 735 ntBASIC1.93□□□□□ -2.1
CPSF4O95639 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC1.93□□□□□ -2.1
CPSF4O95639 AC087373.1-201ENST00000524920 491 ntBASIC1.93□□□□□ -2.1
CPSF4O95639 AC087242.1-201ENST00000536931 572 ntTSL 4 BASIC1.93□□□□□ -2.1
CPSF4O95639 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC1.93□□□□□ -2.1
CPSF4O95639 YWHAZP1-201ENST00000556286 722 ntBASIC1.93□□□□□ -2.1
CPSF4O95639 AC066613.1-202ENST00000560727 630 ntTSL 5 BASIC1.93□□□□□ -2.1
CPSF4O95639 AC026464.5-201ENST00000562497 722 ntBASIC1.93□□□□□ -2.1
CPSF4O95639 AC009101.2-201ENST00000564293 456 ntTSL 3 BASIC1.93□□□□□ -2.1
CPSF4O95639 RPS3AP23-202ENST00000574601 686 ntBASIC1.93□□□□□ -2.1
CPSF4O95639 SNORD53-201ENST00000579969 78 ntBASIC1.93□□□□□ -2.1
CPSF4O95639 AC015688.2-201ENST00000584523 262 ntBASIC1.93□□□□□ -2.1
CPSF4O95639 DUXAP11-201ENST00000603858 526 ntBASIC1.93□□□□□ -2.1
CPSF4O95639 AC004853.1-201ENST00000604902 698 ntBASIC1.93□□□□□ -2.1
CPSF4O95639 AC080013.4-201ENST00000607624 649 ntBASIC1.93□□□□□ -2.1
CPSF4O95639 PART1_2.1-201ENST00000612397 250 ntBASIC1.93□□□□□ -2.1
CPSF4O95639 Y_RNA.783-201ENST00000613546 102 ntBASIC1.93□□□□□ -2.1
CPSF4O95639 AC104763.3-201ENST00000613765 618 ntBASIC1.93□□□□□ -2.1
CPSF4O95639 AL049777.1-201ENST00000622740 518 ntBASIC1.93□□□□□ -2.1
CPSF4O95639 AC002064.3-201ENST00000623448 346 ntBASIC1.93□□□□□ -2.1
CPSF4O95639 C8orf89-202ENST00000624510 658 ntAPPRIS P2 TSL 3 BASIC1.93□□□□□ -2.1
CPSF4O95639 AC099654.8-201ENST00000637757 681 ntBASIC1.93□□□□□ -2.1
CPSF4O95639 AC091564.4-201ENST00000533934 2194 ntBASIC1.93□□□□□ -2.1
CPSF4O95639 AC090740.1-201ENST00000623193 2262 ntBASIC1.93□□□□□ -2.1
CPSF4O95639 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC1.93□□□□□ -2.1
CPSF4O95639 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC1.92□□□□□ -2.1
CPSF4O95639 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
CPSF4O95639 RNU6-1176P-201ENST00000390955 107 ntBASIC1.92□□□□□ -2.1
CPSF4O95639 AL023284.1-201ENST00000403956 276 ntBASIC1.92□□□□□ -2.1
CPSF4O95639 HMGB3P2-201ENST00000411913 584 ntBASIC1.92□□□□□ -2.1
CPSF4O95639 ERMN-209ENST00000420719 1246 ntTSL 2 BASIC1.92□□□□□ -2.1
CPSF4O95639 HMGN2P30-201ENST00000423237 256 ntBASIC1.92□□□□□ -2.1
CPSF4O95639 GNGT1-202ENST00000428834 731 ntTSL 3 BASIC1.92□□□□□ -2.1
CPSF4O95639 ZMYM4-AS1-201ENST00000432683 459 ntTSL 2 BASIC1.92□□□□□ -2.1
CPSF4O95639 OR5H14-201ENST00000437310 1080 ntAPPRIS P1 BASIC1.92□□□□□ -2.1
CPSF4O95639 RPL23AP76-201ENST00000441860 458 ntBASIC1.92□□□□□ -2.1
CPSF4O95639 AC234775.1-201ENST00000454247 670 ntBASIC1.92□□□□□ -2.1
CPSF4O95639 MTCO3P11-201ENST00000455103 774 ntBASIC1.92□□□□□ -2.1
CPSF4O95639 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC1.92□□□□□ -2.1
CPSF4O95639 HSPE1P6-201ENST00000479457 291 ntBASIC1.92□□□□□ -2.1
CPSF4O95639 AC114981.1-201ENST00000503897 678 ntBASIC1.92□□□□□ -2.1
CPSF4O95639 AC104090.1-201ENST00000506341 1171 ntBASIC1.92□□□□□ -2.1
CPSF4O95639 AC113420.1-201ENST00000507903 571 ntBASIC1.92□□□□□ -2.1
CPSF4O95639 AC008837.2-201ENST00000513076 418 ntBASIC1.92□□□□□ -2.1
CPSF4O95639 AC093677.1-201ENST00000514414 678 ntBASIC1.92□□□□□ -2.1
CPSF4O95639 RNU6-583P-201ENST00000516012 92 ntBASIC1.92□□□□□ -2.1
CPSF4O95639 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC1.92□□□□□ -2.1
CPSF4O95639 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC1.92□□□□□ -2.1
CPSF4O95639 AC087276.1-201ENST00000529659 480 ntBASIC1.92□□□□□ -2.1
CPSF4O95639 HTN3-205ENST00000530128 775 ntAPPRIS P2 TSL 2 BASIC1.92□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 111.9 ms