Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 AC108729.1-201ENST00000487812 947 ntBASIC2.58□□□□□ -2
CLDN9O95484 AC010486.1-201ENST00000511793 424 ntBASIC2.58□□□□□ -2
CLDN9O95484 AC024589.1-201ENST00000512207 263 ntBASIC2.58□□□□□ -2
CLDN9O95484 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC2.58□□□□□ -2
CLDN9O95484 MTCO1P47-201ENST00000523889 1271 ntBASIC2.58□□□□□ -2
CLDN9O95484 PLCZ1-203ENST00000534932 525 ntTSL 4 BASIC2.58□□□□□ -2
CLDN9O95484 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC2.58□□□□□ -2
CLDN9O95484 MGST1-215ENST00000540056 546 ntTSL 3 BASIC2.58□□□□□ -2
CLDN9O95484 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC2.58□□□□□ -2
CLDN9O95484 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC2.58□□□□□ -2
CLDN9O95484 AC012170.2-201ENST00000560380 667 ntTSL 3 BASIC2.58□□□□□ -2
CLDN9O95484 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC2.58□□□□□ -2
CLDN9O95484 RPL23AP84-201ENST00000571193 464 ntBASIC2.58□□□□□ -2
CLDN9O95484 AC010620.2-201ENST00000600135 313 ntBASIC2.58□□□□□ -2
CLDN9O95484 AL136363.1-201ENST00000605349 337 ntBASIC2.58□□□□□ -2
CLDN9O95484 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC2.58□□□□□ -2
CLDN9O95484 AC013412.1-201ENST00000610687 192 ntBASIC2.58□□□□□ -2
CLDN9O95484 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
CLDN9O95484 AC004852.3-201ENST00000614131 326 ntBASIC2.58□□□□□ -2
CLDN9O95484 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC2.58□□□□□ -2
CLDN9O95484 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC2.58□□□□□ -2
CLDN9O95484 MTND4P9-201ENST00000507819 1346 ntBASIC2.58□□□□□ -2
CLDN9O95484 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.58□□□□□ -2
CLDN9O95484 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC2.57□□□□□ -2
CLDN9O95484 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC2.57□□□□□ -2
CLDN9O95484 RNU6-741P-201ENST00000383889 107 ntBASIC2.57□□□□□ -2
CLDN9O95484 MIR122-201ENST00000385044 85 ntBASIC2.57□□□□□ -2
CLDN9O95484 MIR620-201ENST00000385232 95 ntBASIC2.57□□□□□ -2
CLDN9O95484 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC2.57□□□□□ -2
CLDN9O95484 RNA5SP492-201ENST00000411330 114 ntBASIC2.57□□□□□ -2
CLDN9O95484 RNU6-516P-201ENST00000411381 104 ntBASIC2.57□□□□□ -2
CLDN9O95484 USP9YP33-201ENST00000412220 421 ntBASIC2.57□□□□□ -2
CLDN9O95484 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC2.57□□□□□ -2
CLDN9O95484 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC2.57□□□□□ -2
CLDN9O95484 AL513477.1-202ENST00000417061 214 ntBASIC2.57□□□□□ -2
CLDN9O95484 AC009414.1-201ENST00000427200 443 ntBASIC2.57□□□□□ -2
CLDN9O95484 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC2.57□□□□□ -2
CLDN9O95484 USP9YP35-201ENST00000435696 412 ntBASIC2.57□□□□□ -2
CLDN9O95484 OR10R1P-201ENST00000441524 1141 ntBASIC2.57□□□□□ -2
CLDN9O95484 RPL32P28-201ENST00000443577 397 ntBASIC2.57□□□□□ -2
CLDN9O95484 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC2.57□□□□□ -2
CLDN9O95484 CBWD4P-201ENST00000445695 655 ntBASIC2.57□□□□□ -2
CLDN9O95484 EEF1E1P1-201ENST00000446998 430 ntBASIC2.57□□□□□ -2
CLDN9O95484 ST13P20-201ENST00000447996 1065 ntBASIC2.57□□□□□ -2
CLDN9O95484 GRM7-AS3-208ENST00000455623 947 ntTSL 3 BASIC2.57□□□□□ -2
CLDN9O95484 snoU109.3-201ENST00000459477 145 ntBASIC2.57□□□□□ -2
CLDN9O95484 KC877373.1-201ENST00000479066 408 ntBASIC2.57□□□□□ -2
CLDN9O95484 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC2.57□□□□□ -2
CLDN9O95484 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC2.57□□□□□ -2
CLDN9O95484 AC116353.3-201ENST00000511215 249 ntBASIC2.57□□□□□ -2
CLDN9O95484 RNA5SP367-201ENST00000516557 118 ntBASIC2.57□□□□□ -2
CLDN9O95484 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC2.57□□□□□ -2
CLDN9O95484 HSPE1P20-201ENST00000538133 289 ntBASIC2.57□□□□□ -2
CLDN9O95484 AC117377.1-201ENST00000547633 1038 ntTSL 1 (best) BASIC2.57□□□□□ -2
CLDN9O95484 AC009712.1-201ENST00000564938 316 ntBASIC2.57□□□□□ -2
CLDN9O95484 AC079411.1-201ENST00000565441 795 ntTSL 1 (best) BASIC2.57□□□□□ -2
CLDN9O95484 BNIP3P10-201ENST00000605360 577 ntBASIC2.57□□□□□ -2
CLDN9O95484 AC103710.4-201ENST00000609301 899 ntBASIC2.57□□□□□ -2
CLDN9O95484 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC2.57□□□□□ -2
CLDN9O95484 BX664608.1-201ENST00000610519 487 ntBASIC2.57□□□□□ -2
CLDN9O95484 HOTTIP_4.1-201ENST00000618195 165 ntBASIC2.57□□□□□ -2
CLDN9O95484 AC007998.5-201ENST00000622938 237 ntBASIC2.57□□□□□ -2
CLDN9O95484 UGP2-231ENST00000627474 264 ntTSL 5 BASIC2.57□□□□□ -2
CLDN9O95484 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC2.57□□□□□ -2
CLDN9O95484 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
CLDN9O95484 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC2.57□□□□□ -2
CLDN9O95484 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
CLDN9O95484 RNU1-105P-201ENST00000363470 161 ntBASIC2.56□□□□□ -2
CLDN9O95484 SNORA5B-201ENST00000363786 132 ntBASIC2.56□□□□□ -2
CLDN9O95484 RNA5SP126-201ENST00000365092 109 ntBASIC2.56□□□□□ -2
CLDN9O95484 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC2.56□□□□□ -2
CLDN9O95484 MIR9-1-201ENST00000385198 89 ntBASIC2.56□□□□□ -2
CLDN9O95484 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC2.56□□□□□ -2
CLDN9O95484 AL160272.1-201ENST00000421509 521 ntTSL 3 BASIC2.56□□□□□ -2
CLDN9O95484 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC2.56□□□□□ -2
CLDN9O95484 RPL36AP6-201ENST00000435770 321 ntBASIC2.56□□□□□ -2
CLDN9O95484 AL714022.1-201ENST00000439897 151 ntBASIC2.56□□□□□ -2
CLDN9O95484 Z82210.1-201ENST00000440037 231 ntBASIC2.56□□□□□ -2
CLDN9O95484 PIGFP3-201ENST00000441918 722 ntBASIC2.56□□□□□ -2
CLDN9O95484 EXOSC3P1-201ENST00000448649 500 ntBASIC2.56□□□□□ -2
CLDN9O95484 ZNF736P4Y-201ENST00000454995 1243 ntBASIC2.56□□□□□ -2
CLDN9O95484 FCF1P6-201ENST00000456841 595 ntBASIC2.56□□□□□ -2
CLDN9O95484 RPS20P20-201ENST00000460498 340 ntBASIC2.56□□□□□ -2
CLDN9O95484 AC116337.2-201ENST00000477662 156 ntBASIC2.56□□□□□ -2
CLDN9O95484 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC2.56□□□□□ -2
CLDN9O95484 AC021146.8-201ENST00000507455 733 ntBASIC2.56□□□□□ -2
CLDN9O95484 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC2.56□□□□□ -2
CLDN9O95484 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC2.56□□□□□ -2
CLDN9O95484 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC2.56□□□□□ -2
CLDN9O95484 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC2.56□□□□□ -2
CLDN9O95484 VN1R90P-201ENST00000595717 726 ntBASIC2.56□□□□□ -2
CLDN9O95484 AL035413.2-201ENST00000604801 525 ntBASIC2.56□□□□□ -2
CLDN9O95484 MIR7106-201ENST00000612419 65 ntBASIC2.56□□□□□ -2
CLDN9O95484 UCA1.1-201ENST00000620952 75 ntBASIC2.56□□□□□ -2
CLDN9O95484 AC009268.2-201ENST00000621925 457 ntBASIC2.56□□□□□ -2
CLDN9O95484 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC2.56□□□□□ -2
CLDN9O95484 DLD-214ENST00000639772 421 ntTSL 5 BASIC2.56□□□□□ -2
CLDN9O95484 DDX43P2-201ENST00000604753 1354 ntBASIC2.56□□□□□ -2
CLDN9O95484 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC2.56□□□□□ -2
CLDN9O95484 AC138915.1-201ENST00000565427 1685 ntBASIC2.56□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 97 ms