Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
MSH4O15457 RNU6-76P-201ENST00000384060 104 ntBASIC2.77□□□□□ -1.97
MSH4O15457 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC2.77□□□□□ -1.97
MSH4O15457 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.77□□□□□ -1.97
MSH4O15457 MIR1290-201ENST00000408735 78 ntBASIC2.77□□□□□ -1.97
MSH4O15457 AC093157.1-203ENST00000416329 713 ntTSL 5 BASIC2.77□□□□□ -1.97
MSH4O15457 MTCYBP38-201ENST00000417160 1123 ntBASIC2.77□□□□□ -1.97
MSH4O15457 AC009313.1-201ENST00000425470 503 ntTSL 3 BASIC2.77□□□□□ -1.97
MSH4O15457 AC092573.2-201ENST00000434546 243 ntBASIC2.77□□□□□ -1.97
MSH4O15457 LAMTOR5P1-201ENST00000444290 270 ntBASIC2.77□□□□□ -1.97
MSH4O15457 MTND1P31-201ENST00000449206 961 ntBASIC2.77□□□□□ -1.97
MSH4O15457 OR6K1P-201ENST00000456766 971 ntBASIC2.77□□□□□ -1.97
MSH4O15457 RN7SL499P-201ENST00000481141 276 ntBASIC2.77□□□□□ -1.97
MSH4O15457 AC010273.1-201ENST00000504129 946 ntTSL 5 BASIC2.77□□□□□ -1.97
MSH4O15457 LINC01481-201ENST00000552998 629 ntTSL 2 BASIC2.77□□□□□ -1.97
MSH4O15457 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
MSH4O15457 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC2.77□□□□□ -1.97
MSH4O15457 AC012170.2-201ENST00000560380 667 ntTSL 3 BASIC2.77□□□□□ -1.97
MSH4O15457 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC2.77□□□□□ -1.97
MSH4O15457 AC010653.1-201ENST00000571108 881 ntBASIC2.77□□□□□ -1.97
MSH4O15457 MTCO3P13-201ENST00000577757 781 ntBASIC2.77□□□□□ -1.97
MSH4O15457 AL353997.4-201ENST00000586196 166 ntBASIC2.77□□□□□ -1.97
MSH4O15457 AC079089.3-201ENST00000603094 673 ntBASIC2.77□□□□□ -1.97
MSH4O15457 THRA1/BTR-203ENST00000604191 571 ntTSL 4 BASIC2.77□□□□□ -1.97
MSH4O15457 AC080013.3-201ENST00000606839 578 ntBASIC2.77□□□□□ -1.97
MSH4O15457 AC004067.1-201ENST00000608733 700 ntBASIC2.77□□□□□ -1.97
MSH4O15457 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC2.77□□□□□ -1.97
MSH4O15457 AC006213.4-201ENST00000616184 634 ntBASIC2.77□□□□□ -1.97
MSH4O15457 AL138880.2-201ENST00000616214 239 ntBASIC2.77□□□□□ -1.97
MSH4O15457 CTSLP2-204ENST00000629029 392 ntBASIC2.77□□□□□ -1.97
MSH4O15457 IGHVIII-44-202ENST00000636235 289 ntBASIC2.77□□□□□ -1.97
MSH4O15457 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC2.77□□□□□ -1.97
MSH4O15457 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
MSH4O15457 AC092447.7-201ENST00000422212 1621 ntBASIC2.77□□□□□ -1.97
MSH4O15457 AC069528.2-201ENST00000624849 1991 ntBASIC2.77□□□□□ -1.97
MSH4O15457 DDX43P2-201ENST00000604753 1354 ntBASIC2.76□□□□□ -1.97
MSH4O15457 AC011477.1-204ENST00000623416 1325 ntBASIC2.76□□□□□ -1.97
MSH4O15457 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
MSH4O15457 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC2.76□□□□□ -1.97
MSH4O15457 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
MSH4O15457 OR52E6-201ENST00000329322 970 ntAPPRIS P1 BASIC2.76□□□□□ -1.97
MSH4O15457 RNU6-289P-201ENST00000364093 107 ntBASIC2.76□□□□□ -1.97
MSH4O15457 SNORA14A-201ENST00000364773 135 ntBASIC2.76□□□□□ -1.97
MSH4O15457 RNU6-1207P-201ENST00000384343 107 ntBASIC2.76□□□□□ -1.97
MSH4O15457 RNA5SP252-201ENST00000391131 119 ntBASIC2.76□□□□□ -1.97
MSH4O15457 RNU6-1197P-201ENST00000391183 107 ntBASIC2.76□□□□□ -1.97
MSH4O15457 SNORA26.7-201ENST00000391288 122 ntBASIC2.76□□□□□ -1.97
MSH4O15457 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC2.76□□□□□ -1.97
MSH4O15457 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC2.76□□□□□ -1.97
MSH4O15457 AL359878.2-201ENST00000435531 407 ntTSL 3 BASIC2.76□□□□□ -1.97
MSH4O15457 SNRPEP7-201ENST00000438350 220 ntBASIC2.76□□□□□ -1.97
MSH4O15457 AC009299.3-202ENST00000445372 538 ntTSL 3 BASIC2.76□□□□□ -1.97
MSH4O15457 EEF1E1P1-201ENST00000446998 430 ntBASIC2.76□□□□□ -1.97
MSH4O15457 NAALADL2-AS3-202ENST00000453180 413 ntTSL 3 BASIC2.76□□□□□ -1.97
MSH4O15457 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC2.76□□□□□ -1.97
MSH4O15457 SNORD121B-201ENST00000458838 81 ntBASIC2.76□□□□□ -1.97
MSH4O15457 AC104563.1-201ENST00000476147 376 ntBASIC2.76□□□□□ -1.97
MSH4O15457 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC2.76□□□□□ -1.97
MSH4O15457 AC104803.1-201ENST00000506917 529 ntTSL 3 BASIC2.76□□□□□ -1.97
MSH4O15457 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC2.76□□□□□ -1.97
MSH4O15457 SNORA31.22-201ENST00000517204 135 ntBASIC2.76□□□□□ -1.97
MSH4O15457 AP001646.1-201ENST00000527936 915 ntBASIC2.76□□□□□ -1.97
MSH4O15457 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC2.76□□□□□ -1.97
MSH4O15457 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC2.76□□□□□ -1.97
MSH4O15457 HSPE1P7-201ENST00000604681 321 ntBASIC2.76□□□□□ -1.97
MSH4O15457 AL133507.1-201ENST00000605269 557 ntBASIC2.76□□□□□ -1.97
MSH4O15457 AC027309.3-201ENST00000623419 351 ntBASIC2.76□□□□□ -1.97
MSH4O15457 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.76□□□□□ -1.97
MSH4O15457 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC2.76□□□□□ -1.97
MSH4O15457 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC2.75□□□□□ -1.97
MSH4O15457 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
MSH4O15457 RNA5SP289-201ENST00000362332 137 ntBASIC2.75□□□□□ -1.97
MSH4O15457 RNU6-359P-201ENST00000365466 108 ntBASIC2.75□□□□□ -1.97
MSH4O15457 MTCO2P17-201ENST00000424336 677 ntBASIC2.75□□□□□ -1.97
MSH4O15457 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC2.75□□□□□ -1.97
MSH4O15457 COX7BP2-201ENST00000437976 242 ntBASIC2.75□□□□□ -1.97
MSH4O15457 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC2.75□□□□□ -1.97
MSH4O15457 AL390783.1-203ENST00000457058 248 ntTSL 3 BASIC2.75□□□□□ -1.97
MSH4O15457 AL031183.1-201ENST00000457667 207 ntBASIC2.75□□□□□ -1.97
MSH4O15457 USP9YP25-201ENST00000457708 443 ntBASIC2.75□□□□□ -1.97
MSH4O15457 HSPE1P6-201ENST00000479457 291 ntBASIC2.75□□□□□ -1.97
MSH4O15457 HMGB1P36-201ENST00000487709 576 ntBASIC2.75□□□□□ -1.97
MSH4O15457 ARL4AP2-201ENST00000507378 601 ntBASIC2.75□□□□□ -1.97
MSH4O15457 AC024589.1-201ENST00000512207 263 ntBASIC2.75□□□□□ -1.97
MSH4O15457 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC2.75□□□□□ -1.97
MSH4O15457 RNU6-798P-201ENST00000516912 103 ntBASIC2.75□□□□□ -1.97
MSH4O15457 SCARNA1-201ENST00000517138 166 ntBASIC2.75□□□□□ -1.97
MSH4O15457 HMGB1P41-201ENST00000520234 440 ntBASIC2.75□□□□□ -1.97
MSH4O15457 AP003122.3-201ENST00000526316 255 ntBASIC2.75□□□□□ -1.97
MSH4O15457 CASP1P1-201ENST00000526345 212 ntBASIC2.75□□□□□ -1.97
MSH4O15457 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC2.75□□□□□ -1.97
MSH4O15457 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC2.75□□□□□ -1.97
MSH4O15457 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC2.75□□□□□ -1.97
MSH4O15457 LINC02410-201ENST00000553095 393 ntTSL 2 BASIC2.75□□□□□ -1.97
MSH4O15457 NBEAP1-201ENST00000554452 979 ntBASIC2.75□□□□□ -1.97
MSH4O15457 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC2.75□□□□□ -1.97
MSH4O15457 MTND1P8-201ENST00000571424 950 ntBASIC2.75□□□□□ -1.97
MSH4O15457 AC008277.1-203ENST00000594921 1149 ntTSL 5 BASIC2.75□□□□□ -1.97
MSH4O15457 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC2.75□□□□□ -1.97
MSH4O15457 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC2.75□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 146.4 ms