Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC2.79□□□□□ -1.96
FOXA2Q9Y261 AP002812.1-201ENST00000495378 474 ntBASIC2.79□□□□□ -1.96
FOXA2Q9Y261 MTCYBP35-201ENST00000503630 1137 ntBASIC2.79□□□□□ -1.96
FOXA2Q9Y261 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC2.79□□□□□ -1.96
FOXA2Q9Y261 AC092436.2-201ENST00000515188 411 ntTSL 2 BASIC2.79□□□□□ -1.96
FOXA2Q9Y261 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC2.79□□□□□ -1.96
FOXA2Q9Y261 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
FOXA2Q9Y261 LRRC34P1-201ENST00000542742 915 ntBASIC2.79□□□□□ -1.96
FOXA2Q9Y261 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC2.79□□□□□ -1.96
FOXA2Q9Y261 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC2.79□□□□□ -1.96
FOXA2Q9Y261 AL845331.3-202ENST00000562856 261 ntBASIC2.79□□□□□ -1.96
FOXA2Q9Y261 AC010653.1-201ENST00000571108 881 ntBASIC2.79□□□□□ -1.96
FOXA2Q9Y261 MYL12B-204ENST00000584539 1064 ntAPPRIS P1 TSL 3 BASIC2.79□□□□□ -1.96
FOXA2Q9Y261 ABBA01006766.1-201ENST00000584728 294 ntBASIC2.79□□□□□ -1.96
FOXA2Q9Y261 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC2.79□□□□□ -1.96
FOXA2Q9Y261 HMGN2P15-201ENST00000585707 270 ntBASIC2.79□□□□□ -1.96
FOXA2Q9Y261 AC005498.1-201ENST00000592125 465 ntBASIC2.79□□□□□ -1.96
FOXA2Q9Y261 AL355877.2-201ENST00000603670 358 ntBASIC2.79□□□□□ -1.96
FOXA2Q9Y261 AL035413.2-201ENST00000604801 525 ntBASIC2.79□□□□□ -1.96
FOXA2Q9Y261 AC018638.7-201ENST00000605836 1114 ntBASIC2.79□□□□□ -1.96
FOXA2Q9Y261 AC092142.2-201ENST00000614642 354 ntTSL 3 BASIC2.79□□□□□ -1.96
FOXA2Q9Y261 AC091304.6-201ENST00000619761 202 ntBASIC2.79□□□□□ -1.96
FOXA2Q9Y261 AC002064.3-201ENST00000623448 346 ntBASIC2.79□□□□□ -1.96
FOXA2Q9Y261 AP000770.2-201ENST00000623694 100 ntBASIC2.79□□□□□ -1.96
FOXA2Q9Y261 AC012442.3-202ENST00000636742 206 ntBASIC2.79□□□□□ -1.96
FOXA2Q9Y261 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC2.79□□□□□ -1.96
FOXA2Q9Y261 FAM35CP-201ENST00000554755 2470 ntBASIC2.79□□□□□ -1.96
FOXA2Q9Y261 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC2.79□□□□□ -1.96
FOXA2Q9Y261 PABPC1P9-201ENST00000426076 1612 ntBASIC2.79□□□□□ -1.96
FOXA2Q9Y261 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC2.78□□□□□ -1.96
FOXA2Q9Y261 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
FOXA2Q9Y261 AC032011.1-201ENST00000611703 1549 ntBASIC2.78□□□□□ -1.96
FOXA2Q9Y261 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC2.78□□□□□ -1.96
FOXA2Q9Y261 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC2.78□□□□□ -1.96
FOXA2Q9Y261 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
FOXA2Q9Y261 MTND5P29-201ENST00000458676 1807 ntBASIC2.78□□□□□ -1.96
FOXA2Q9Y261 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC2.78□□□□□ -1.96
FOXA2Q9Y261 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
FOXA2Q9Y261 RNU6-884P-201ENST00000363889 107 ntBASIC2.78□□□□□ -1.96
FOXA2Q9Y261 Y_RNA.560-201ENST00000384689 102 ntBASIC2.78□□□□□ -1.96
FOXA2Q9Y261 MIR218-2-201ENST00000385006 110 ntBASIC2.78□□□□□ -1.96
FOXA2Q9Y261 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC2.78□□□□□ -1.96
FOXA2Q9Y261 MIR888-201ENST00000401186 77 ntBASIC2.78□□□□□ -1.96
FOXA2Q9Y261 RNU6-193P-201ENST00000410977 107 ntBASIC2.78□□□□□ -1.96
FOXA2Q9Y261 RPS29P4-201ENST00000414733 161 ntBASIC2.78□□□□□ -1.96
FOXA2Q9Y261 AC104651.1-201ENST00000427559 735 ntBASIC2.78□□□□□ -1.96
FOXA2Q9Y261 AL161640.1-201ENST00000429507 390 ntTSL 2 BASIC2.78□□□□□ -1.96
FOXA2Q9Y261 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC2.78□□□□□ -1.96
FOXA2Q9Y261 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC2.78□□□□□ -1.96
FOXA2Q9Y261 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC2.78□□□□□ -1.96
FOXA2Q9Y261 SNRPEP9-201ENST00000436794 238 ntBASIC2.78□□□□□ -1.96
FOXA2Q9Y261 CYCSP32-201ENST00000440548 321 ntBASIC2.78□□□□□ -1.96
FOXA2Q9Y261 AC008264.1-201ENST00000447612 367 ntBASIC2.78□□□□□ -1.96
FOXA2Q9Y261 AL135787.1-201ENST00000450154 302 ntTSL 3 BASIC2.78□□□□□ -1.96
FOXA2Q9Y261 AL137847.2-201ENST00000458111 527 ntTSL 3 BASIC2.78□□□□□ -1.96
FOXA2Q9Y261 SNORA84-201ENST00000459229 133 ntBASIC2.78□□□□□ -1.96
FOXA2Q9Y261 RPS26P21-201ENST00000475397 348 ntBASIC2.78□□□□□ -1.96
FOXA2Q9Y261 AC106707.2-201ENST00000484182 374 ntBASIC2.78□□□□□ -1.96
FOXA2Q9Y261 RPS3AP22-201ENST00000488297 769 ntBASIC2.78□□□□□ -1.96
FOXA2Q9Y261 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC2.78□□□□□ -1.96
FOXA2Q9Y261 AC114786.4-201ENST00000508771 728 ntBASIC2.78□□□□□ -1.96
FOXA2Q9Y261 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC2.78□□□□□ -1.96
FOXA2Q9Y261 MIR2276-201ENST00000516886 89 ntBASIC2.78□□□□□ -1.96
FOXA2Q9Y261 AC025881.1-201ENST00000518851 512 ntBASIC2.78□□□□□ -1.96
FOXA2Q9Y261 DUXAP2-201ENST00000519198 589 ntBASIC2.78□□□□□ -1.96
FOXA2Q9Y261 AC022616.6-201ENST00000520479 119 ntBASIC2.78□□□□□ -1.96
FOXA2Q9Y261 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC2.78□□□□□ -1.96
FOXA2Q9Y261 AC090616.5-201ENST00000581225 299 ntTSL 5 BASIC2.78□□□□□ -1.96
FOXA2Q9Y261 AC020895.1-201ENST00000595362 272 ntBASIC2.78□□□□□ -1.96
FOXA2Q9Y261 AC245389.1-201ENST00000605141 529 ntBASIC2.78□□□□□ -1.96
FOXA2Q9Y261 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC2.78□□□□□ -1.96
FOXA2Q9Y261 AC108747.1-201ENST00000609508 535 ntBASIC2.78□□□□□ -1.96
FOXA2Q9Y261 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
FOXA2Q9Y261 AC008498.1-201ENST00000613012 531 ntBASIC2.78□□□□□ -1.96
FOXA2Q9Y261 AC034102.8-201ENST00000615146 484 ntBASIC2.78□□□□□ -1.96
FOXA2Q9Y261 UCA1.1-201ENST00000620952 75 ntBASIC2.78□□□□□ -1.96
FOXA2Q9Y261 AC009093.8-201ENST00000641769 292 ntBASIC2.78□□□□□ -1.96
FOXA2Q9Y261 MTND5P7-201ENST00000413558 1798 ntBASIC2.78□□□□□ -1.96
FOXA2Q9Y261 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC2.78□□□□□ -1.96
FOXA2Q9Y261 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC2.78□□□□□ -1.96
FOXA2Q9Y261 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC2.78□□□□□ -1.96
FOXA2Q9Y261 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
FOXA2Q9Y261 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC2.77□□□□□ -1.97
FOXA2Q9Y261 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC2.77□□□□□ -1.97
FOXA2Q9Y261 ZBTB8OSP1-201ENST00000342688 498 ntBASIC2.77□□□□□ -1.97
FOXA2Q9Y261 C1orf105-203ENST00000367727 985 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
FOXA2Q9Y261 AC126124.2-201ENST00000413542 321 ntBASIC2.77□□□□□ -1.97
FOXA2Q9Y261 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC2.77□□□□□ -1.97
FOXA2Q9Y261 AL031429.1-201ENST00000426775 749 ntTSL 2 BASIC2.77□□□□□ -1.97
FOXA2Q9Y261 AC009414.1-201ENST00000427200 443 ntBASIC2.77□□□□□ -1.97
FOXA2Q9Y261 ELOCP14-201ENST00000428070 331 ntBASIC2.77□□□□□ -1.97
FOXA2Q9Y261 AC073063.1-201ENST00000434352 607 ntBASIC2.77□□□□□ -1.97
FOXA2Q9Y261 UBE2D3P1-201ENST00000436669 444 ntBASIC2.77□□□□□ -1.97
FOXA2Q9Y261 ELOCP7-201ENST00000439968 331 ntBASIC2.77□□□□□ -1.97
FOXA2Q9Y261 AC016696.1-201ENST00000446949 318 ntBASIC2.77□□□□□ -1.97
FOXA2Q9Y261 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC2.77□□□□□ -1.97
FOXA2Q9Y261 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC2.77□□□□□ -1.97
FOXA2Q9Y261 SSXP1-201ENST00000453640 473 ntBASIC2.77□□□□□ -1.97
FOXA2Q9Y261 SCEL-AS1-201ENST00000456280 493 ntTSL 3 BASIC2.77□□□□□ -1.97
FOXA2Q9Y261 HMGN1P18-201ENST00000457642 277 ntBASIC2.77□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 106.9 ms