Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 DUXAP9-208ENST00000622815 614 ntBASIC3.83□□□□□ -1.8
VPS4AQ9UN37 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC3.83□□□□□ -1.8
VPS4AQ9UN37 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC3.83□□□□□ -1.8
VPS4AQ9UN37 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC3.83□□□□□ -1.8
VPS4AQ9UN37 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC3.83□□□□□ -1.8
VPS4AQ9UN37 IPO8P1-201ENST00000455509 3109 ntBASIC3.83□□□□□ -1.8
VPS4AQ9UN37 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC3.83□□□□□ -1.8
VPS4AQ9UN37 MTCO1P9-201ENST00000505577 1534 ntBASIC3.82□□□□□ -1.8
VPS4AQ9UN37 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC3.82□□□□□ -1.8
VPS4AQ9UN37 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC3.82□□□□□ -1.8
VPS4AQ9UN37 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC3.82□□□□□ -1.8
VPS4AQ9UN37 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
VPS4AQ9UN37 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
VPS4AQ9UN37 HSPE1P11-201ENST00000339579 310 ntBASIC3.82□□□□□ -1.8
VPS4AQ9UN37 RNA5SP119-201ENST00000362715 117 ntBASIC3.82□□□□□ -1.8
VPS4AQ9UN37 Y_RNA.89-201ENST00000363031 102 ntBASIC3.82□□□□□ -1.8
VPS4AQ9UN37 SNORD56.2-201ENST00000363242 71 ntBASIC3.82□□□□□ -1.8
VPS4AQ9UN37 RNU6-456P-201ENST00000384493 107 ntBASIC3.82□□□□□ -1.8
VPS4AQ9UN37 RNU6-278P-201ENST00000390945 109 ntBASIC3.82□□□□□ -1.8
VPS4AQ9UN37 RNU6-908P-201ENST00000410160 94 ntBASIC3.82□□□□□ -1.8
VPS4AQ9UN37 SNORA57.3-201ENST00000411095 141 ntBASIC3.82□□□□□ -1.8
VPS4AQ9UN37 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC3.82□□□□□ -1.8
VPS4AQ9UN37 MTCO1P20-201ENST00000425366 358 ntBASIC3.82□□□□□ -1.8
VPS4AQ9UN37 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC3.82□□□□□ -1.8
VPS4AQ9UN37 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC3.82□□□□□ -1.8
VPS4AQ9UN37 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC3.82□□□□□ -1.8
VPS4AQ9UN37 AL356535.1-201ENST00000440335 398 ntBASIC3.82□□□□□ -1.8
VPS4AQ9UN37 AL662791.1-201ENST00000441992 928 ntBASIC3.82□□□□□ -1.8
VPS4AQ9UN37 AL353572.1-201ENST00000442490 417 ntBASIC3.82□□□□□ -1.8
VPS4AQ9UN37 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC3.82□□□□□ -1.8
VPS4AQ9UN37 FDX1P2-201ENST00000450769 375 ntBASIC3.82□□□□□ -1.8
VPS4AQ9UN37 GAS5-223ENST00000452197 483 ntTSL 3 BASIC3.82□□□□□ -1.8
VPS4AQ9UN37 RNU6-420P-201ENST00000458780 107 ntBASIC3.82□□□□□ -1.8
VPS4AQ9UN37 RNU7-170P-201ENST00000459303 61 ntBASIC3.82□□□□□ -1.8
VPS4AQ9UN37 AC083798.1-201ENST00000472671 131 ntBASIC3.82□□□□□ -1.8
VPS4AQ9UN37 RPL36AP51-201ENST00000487216 318 ntBASIC3.82□□□□□ -1.8
VPS4AQ9UN37 HSPD1P15-201ENST00000505573 1122 ntBASIC3.82□□□□□ -1.8
VPS4AQ9UN37 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC3.82□□□□□ -1.8
VPS4AQ9UN37 RNU6-64P-201ENST00000517119 105 ntBASIC3.82□□□□□ -1.8
VPS4AQ9UN37 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC3.82□□□□□ -1.8
VPS4AQ9UN37 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
VPS4AQ9UN37 AC126177.3-201ENST00000551839 688 ntBASIC3.82□□□□□ -1.8
VPS4AQ9UN37 AL121603.1-201ENST00000553815 142 ntBASIC3.82□□□□□ -1.8
VPS4AQ9UN37 XIAPP1-201ENST00000603162 600 ntBASIC3.82□□□□□ -1.8
VPS4AQ9UN37 AC012468.1-201ENST00000604888 430 ntBASIC3.82□□□□□ -1.8
VPS4AQ9UN37 AP001596.2-201ENST00000608410 312 ntBASIC3.82□□□□□ -1.8
VPS4AQ9UN37 AC093788.1-201ENST00000609356 927 ntBASIC3.82□□□□□ -1.8
VPS4AQ9UN37 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC3.82□□□□□ -1.8
VPS4AQ9UN37 AC022306.2-201ENST00000617563 647 ntBASIC3.82□□□□□ -1.8
VPS4AQ9UN37 AC019226.1-201ENST00000625666 515 ntBASIC3.82□□□□□ -1.8
VPS4AQ9UN37 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC3.82□□□□□ -1.8
VPS4AQ9UN37 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
VPS4AQ9UN37 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC3.82□□□□□ -1.8
VPS4AQ9UN37 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC3.82□□□□□ -1.8
VPS4AQ9UN37 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC3.82□□□□□ -1.8
VPS4AQ9UN37 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC3.82□□□□□ -1.8
VPS4AQ9UN37 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
VPS4AQ9UN37 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.81□□□□□ -1.8
VPS4AQ9UN37 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC3.81□□□□□ -1.8
VPS4AQ9UN37 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC3.81□□□□□ -1.8
VPS4AQ9UN37 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
VPS4AQ9UN37 RNU5E-8P-201ENST00000363502 116 ntBASIC3.81□□□□□ -1.8
VPS4AQ9UN37 RNU6-629P-201ENST00000384061 103 ntBASIC3.81□□□□□ -1.8
VPS4AQ9UN37 RNU6-432P-201ENST00000384196 109 ntBASIC3.81□□□□□ -1.8
VPS4AQ9UN37 RNU6-39P-201ENST00000384344 107 ntBASIC3.81□□□□□ -1.8
VPS4AQ9UN37 MIR558-201ENST00000384920 94 ntBASIC3.81□□□□□ -1.8
VPS4AQ9UN37 RNU6-1158P-201ENST00000391167 107 ntBASIC3.81□□□□□ -1.8
VPS4AQ9UN37 RNU4-65P-201ENST00000410473 140 ntBASIC3.81□□□□□ -1.8
VPS4AQ9UN37 OR2AS1P-201ENST00000427827 319 ntBASIC3.81□□□□□ -1.8
VPS4AQ9UN37 RPL23AP30-201ENST00000432419 501 ntBASIC3.81□□□□□ -1.8
VPS4AQ9UN37 ATP5HP2-201ENST00000433885 485 ntBASIC3.81□□□□□ -1.8
VPS4AQ9UN37 AC090774.1-201ENST00000435925 246 ntBASIC3.81□□□□□ -1.8
VPS4AQ9UN37 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC3.81□□□□□ -1.8
VPS4AQ9UN37 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC3.81□□□□□ -1.8
VPS4AQ9UN37 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC3.81□□□□□ -1.8
VPS4AQ9UN37 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC3.81□□□□□ -1.8
VPS4AQ9UN37 AC022364.2-201ENST00000457963 554 ntBASIC3.81□□□□□ -1.8
VPS4AQ9UN37 AL049714.1-201ENST00000466686 347 ntBASIC3.81□□□□□ -1.8
VPS4AQ9UN37 AC093278.1-201ENST00000494700 600 ntBASIC3.81□□□□□ -1.8
VPS4AQ9UN37 RPL7P47-201ENST00000497299 556 ntBASIC3.81□□□□□ -1.8
VPS4AQ9UN37 AC078918.1-201ENST00000498515 228 ntBASIC3.81□□□□□ -1.8
VPS4AQ9UN37 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
VPS4AQ9UN37 SNORD27.1-201ENST00000516319 72 ntBASIC3.81□□□□□ -1.8
VPS4AQ9UN37 Y_RNA.704-201ENST00000516851 102 ntBASIC3.81□□□□□ -1.8
VPS4AQ9UN37 RNU6-835P-201ENST00000516974 104 ntBASIC3.81□□□□□ -1.8
VPS4AQ9UN37 RNU6-410P-201ENST00000517006 107 ntBASIC3.81□□□□□ -1.8
VPS4AQ9UN37 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC3.81□□□□□ -1.8
VPS4AQ9UN37 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC3.81□□□□□ -1.8
VPS4AQ9UN37 OR5BN1P-201ENST00000532955 829 ntBASIC3.81□□□□□ -1.8
VPS4AQ9UN37 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
VPS4AQ9UN37 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC3.81□□□□□ -1.8
VPS4AQ9UN37 HMGB1P6-201ENST00000569046 646 ntBASIC3.81□□□□□ -1.8
VPS4AQ9UN37 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC3.81□□□□□ -1.8
VPS4AQ9UN37 MTCO3P24-201ENST00000572729 782 ntBASIC3.81□□□□□ -1.8
VPS4AQ9UN37 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC3.81□□□□□ -1.8
VPS4AQ9UN37 AC007621.1-201ENST00000604544 437 ntBASIC3.81□□□□□ -1.8
VPS4AQ9UN37 AL049634.3-201ENST00000604968 457 ntBASIC3.81□□□□□ -1.8
VPS4AQ9UN37 AC008536.2-201ENST00000607284 349 ntBASIC3.81□□□□□ -1.8
VPS4AQ9UN37 U6.42-201ENST00000618440 107 ntBASIC3.81□□□□□ -1.8
VPS4AQ9UN37 AL136313.1-201ENST00000624804 202 ntBASIC3.81□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 187.6 ms